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The map label for this gene is yxjL [H]

Identifier: 158318246

GI number: 158318246

Start: 7920138

End: 7920785

Strand: Direct

Name: yxjL [H]

Synonym: Franean1_6511

Alternate gene names: 158318246

Gene position: 7920138-7920785 (Clockwise)

Preceding gene: 158318245

Following gene: 158318248

Centisome position: 88.18

GC content: 72.22

Gene sequence:

>648_bases
GTGATCCGGGTCGTGGTCGCCGACGATCAGCCTCTCGTCCGTCTCGGGCTGAAGGTCCTGATCGAGACCGAGGACGACCT
CGAGCTCACCGGCGAGGCCGAGGACGGCCAGGCCGCGCTGGCCCTGGTCCGCCGCACCCGCCCGGACGTCGTCCTCCTCG
ACATCAGGATGCCCGTCCTGGACGGCCTCGCCGCCCTGCGCGCGATCACCGCCGACCCCGCGCTGACCGACACCCGCGTC
GTCATGGTCACCACGTTCGAGTTGGACGAGTACGTCTTCGAGGCTCTGCGCAACGGCGCGTCCGGGTTCGTCCTGAAGGA
CACCGAGCCCGCGGACCTGCTCCGCGCGATCCGGGTCGTCGCCGCCGGCGAGTCGCTGCTCTCCCCCACGATCACCCGCC
GCGTGATCGAGACGTTCGCCCGGCGCCCGGCGGCGCCCGCCGCCGTGGACCTGACCAGTCTCACCGTCCGGGAACGCGAG
GTGATGGGCCTGGTGGGGCTGGGCCTGTCCAACGACGAGATCGCCGCCCGGCTCGTCATCAGCCCGGCGACGGCACGAAC
CCATGTGAGCCGGGTGATGGTCAAGCTCTCCGCCCGGGACCGCGCCCAGCTCGCCGTCCTCGCCAACCAGGCAGGTCTGG
CCGGCTGA

Upstream 100 bases:

>100_bases
TCGGCGGGTCCCTGACGGCGGGCCCGCGTCCGCAGGGAGGATGGAGCGTGCGCACCGACCTGCCCACGCCGGCCGTGTCC
CGCCGCTCCGGAGGGGCCCG

Downstream 100 bases:

>100_bases
TCGCCGGGGACGACGCTCGCACCAGCGGCGTACCGTCCCGGCGGTGCGTCAGTTCGGCGGCGCGCCGTCCTCGAGGTAGA
TCGTCGCGCCGCCGGCGCGC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIRVVVADDQPLVRLGLKVLIETEDDLELTGEAEDGQAALALVRRTRPDVVLLDIRMPVLDGLAALRAITADPALTDTRV
VMVTTFELDEYVFEALRNGASGFVLKDTEPADLLRAIRVVAAGESLLSPTITRRVIETFARRPAAPAAVDLTSLTVRERE
VMGLVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAGLAG

Sequences:

>Translated_215_residues
MIRVVVADDQPLVRLGLKVLIETEDDLELTGEAEDGQAALALVRRTRPDVVLLDIRMPVLDGLAALRAITADPALTDTRV
VMVTTFELDEYVFEALRNGASGFVLKDTEPADLLRAIRVVAAGESLLSPTITRRVIETFARRPAAPAAVDLTSLTVRERE
VMGLVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAGLAG
>Mature_215_residues
MIRVVVADDQPLVRLGLKVLIETEDDLELTGEAEDGQAALALVRRTRPDVVLLDIRMPVLDGLAALRAITADPALTDTRV
VMVTTFELDEYVFEALRNGASGFVLKDTEPADLLRAIRVVAAGESLLSPTITRRVIETFARRPAAPAAVDLTSLTVRERE
VMGLVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAGLAG

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=36.7149758454106, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=34.7826086956522, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788222, Length=217, Percent_Identity=29.9539170506912, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786747, Length=202, Percent_Identity=26.7326732673267, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1790102, Length=205, Percent_Identity=32.1951219512195, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082052, Length=117, Percent_Identity=34.1880341880342, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788712, Length=208, Percent_Identity=24.5192307692308, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23068; Mature: 23068

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVVVADDQPLVRLGLKVLIETEDDLELTGEAEDGQAALALVRRTRPDVVLLDIRMPVL
CEEEEEECCCCHHHCCEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHH
DGLAALRAITADPALTDTRVVMVTTFELDEYVFEALRNGASGFVLKDTEPADLLRAIRVV
HHHHHHHHHCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
AAGESLLSPTITRRVIETFARRPAAPAAVDLTSLTVREREVMGLVGLGLSNDEIAARLVI
HCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHEEECCCCCCCEEEEEEE
SPATARTHVSRVMVKLSARDRAQLAVLANQAGLAG
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MIRVVVADDQPLVRLGLKVLIETEDDLELTGEAEDGQAALALVRRTRPDVVLLDIRMPVL
CEEEEEECCCCHHHCCEEEEEECCCCCEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHH
DGLAALRAITADPALTDTRVVMVTTFELDEYVFEALRNGASGFVLKDTEPADLLRAIRVV
HHHHHHHHHCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
AAGESLLSPTITRRVIETFARRPAAPAAVDLTSLTVREREVMGLVGLGLSNDEIAARLVI
HCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHEEECCCCCCCEEEEEEE
SPATARTHVSRVMVKLSARDRAQLAVLANQAGLAG
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]