| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is comP [H]
Identifier: 158318226
GI number: 158318226
Start: 7890564
End: 7892294
Strand: Direct
Name: comP [H]
Synonym: Franean1_6491
Alternate gene names: 158318226
Gene position: 7890564-7892294 (Clockwise)
Preceding gene: 158318225
Following gene: 158318227
Centisome position: 87.85
GC content: 77.47
Gene sequence:
>1731_bases GTGACCCACCCGCGGCGCCAGCTCCTCACCGCGGCGGCCCTGGCCGGGGCCGCGGTGACCGCCGCGTGCGCCGCCCCACG GCTGCTCGGTGCCGGAACGCCGCCATGGTCCGCCCCGCTGGCCGTGGACGCCGTCCTGCTCACCGCCGGGGTGGCCGCCG GCTGGGCGCCCCGCGCGCGGCGCCGTTCCGAACGCGTTCTGACCATCGCCGCCGACCTCGCCTGCCTCGCCGCGATCGCG GCGGTGGGCCTCGCGGGCGCGCTGGCCACCCTCGGGCACCGCCCGCCGGACGGCGGCGAGAGCTTCACCGGCCCGGTCCT GATCGCGGCGGCCCTCGCCGCCGTCCTGGCCGCCGGGGCTCGGGCCCGGACGGCGGCGCTCGTCCGGCACGCCGTGCGGG GCGCCCGGTACGCGCCCGACGACGTCCTGCGGACCTTCGGCGAGGACGCGAGCCGCGGTACCAGCCTGGACGAGGCGCTG GCCGGGCTGGGTGACGCCCTGCGGCGCAGCCTCTCCCTGCAGCGGGTGGAGATCTGGACCGGCGCGGCCGGGCGCCTCAC CGCCGCCGTCGTGACGCCGGAGAGCCCACCCGCGACCGCTCCGGACGCCGGTGGGCAGGACGCCGGTAGGCCCGCTGCGG GCGGTCCCGGTGCTGCGGGCGGTCCCGGTGCCGCCGCCGGCGGGCCCGCCGAGGTCGGCTCGACGATCGCCCTCACCGCC GGTGATCTCATCGTGCTCGCGCGGACCAGGGTGGCGGGGCCCGGGTGGCTGTCGCTGTGGGTCCCCCAGCTCGCCCGCCG GTACCTGGACGCCCAGGTACGGGTCGTCCCCGCCCGCGCCGGCGGCGCCCTGCTCGGGATGCTCGTCGCCCAGCGGCCAC CGGAGGCCCCCCGGTTCTCCGAGGCCGAGGACCGGATGCTCGCCGAGCTCGGGACACGGGTCGGCACCGTCCTGCACAAC CGCCAGCTCGACGCCAACCTGCGCGACGCACTCACCGACCTGCGGCACGCCAACGAAGAGCTGCGCGGCTCCAGGGCCCG CCTGGTCGCCACCGCGGACGCCGAGCGACGCCGGATCGAGCGCGATCTCCACGACGGGGCGCAGCAGCAGCTGGTCTCGC TCGCCGTCGGCCTCCGGCTGGTCCGCGACCTCATCTCGGACGGTGACTCGGACGGCAGCAGCTCGAACGGCAGCAGCTCG AACGACGGCGACGGGTCCGTGCCCGGCGCGCCGGAACGCGACGAGGACCTGGCCGCCGCCGACGAGCTGCTCACCGCCAT GGCCGAGCAGGTGACCGAGACGATCACCGAGGTCCGCAACCTCGCGCACGGCATCTACCCGCCGCTGCTGCGGTCCTCGG GCCTGACCGAGGCGCTGCGGGCCGCCGGGCAGCGTTCCACGGTGGGCGTGACGGTGCGGGCCGACGACATCGGCCGCTAC CCCCCGGACGTCGAGGCCGCCGTCTACTTCTGCTGCCTGGAGGCGCTGCAGAACGCGGCCAAGCACGCCCCCGGCAGCTC GGTGGAGGTGACGCTCGGCGAGCGGGAGGGGTCGCTCACCTTCGCCGTGTGGGACGACGGCGCCGGCTTCGAACCGGAGA GCTCCGCGCGTGGCCACGGCATGACGAACATGGCGGACCGCATCGGCGCGATCGGCGGCACGCTGCGCTGGGAGTCGTCC CCCGGCTCCGGGACGGGCGTCATCGGCGTCGTGCCCGTGGGTGGCGGCTGA
Upstream 100 bases:
>100_bases GTGCCGGTGCCGGCACAGGTGCGGCCGGCGCCGGCGCCGGTGCCGGCGCCGCCACGGTTGCGGGCGGCGGCGCCGGTCGT GGGCGGGCCGAGGTGTCGGC
Downstream 100 bases:
>100_bases TGGCCGTCCTCGGCGCGATCGGGATGATCGCGCGCAGTGAGCTGCGGCGGCGGTGGGCGGCGCTGATCGCCCTCGGCGTG CTCATCGGCATGGTCGTCGC
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 576; Mature: 575
Protein sequence:
>576_residues MTHPRRQLLTAAALAGAAVTAACAAPRLLGAGTPPWSAPLAVDAVLLTAGVAAGWAPRARRRSERVLTIAADLACLAAIA AVGLAGALATLGHRPPDGGESFTGPVLIAAALAAVLAAGARARTAALVRHAVRGARYAPDDVLRTFGEDASRGTSLDEAL AGLGDALRRSLSLQRVEIWTGAAGRLTAAVVTPESPPATAPDAGGQDAGRPAAGGPGAAGGPGAAAGGPAEVGSTIALTA GDLIVLARTRVAGPGWLSLWVPQLARRYLDAQVRVVPARAGGALLGMLVAQRPPEAPRFSEAEDRMLAELGTRVGTVLHN RQLDANLRDALTDLRHANEELRGSRARLVATADAERRRIERDLHDGAQQQLVSLAVGLRLVRDLISDGDSDGSSSNGSSS NDGDGSVPGAPERDEDLAAADELLTAMAEQVTETITEVRNLAHGIYPPLLRSSGLTEALRAAGQRSTVGVTVRADDIGRY PPDVEAAVYFCCLEALQNAAKHAPGSSVEVTLGEREGSLTFAVWDDGAGFEPESSARGHGMTNMADRIGAIGGTLRWESS PGSGTGVIGVVPVGGG
Sequences:
>Translated_576_residues MTHPRRQLLTAAALAGAAVTAACAAPRLLGAGTPPWSAPLAVDAVLLTAGVAAGWAPRARRRSERVLTIAADLACLAAIA AVGLAGALATLGHRPPDGGESFTGPVLIAAALAAVLAAGARARTAALVRHAVRGARYAPDDVLRTFGEDASRGTSLDEAL AGLGDALRRSLSLQRVEIWTGAAGRLTAAVVTPESPPATAPDAGGQDAGRPAAGGPGAAGGPGAAAGGPAEVGSTIALTA GDLIVLARTRVAGPGWLSLWVPQLARRYLDAQVRVVPARAGGALLGMLVAQRPPEAPRFSEAEDRMLAELGTRVGTVLHN RQLDANLRDALTDLRHANEELRGSRARLVATADAERRRIERDLHDGAQQQLVSLAVGLRLVRDLISDGDSDGSSSNGSSS NDGDGSVPGAPERDEDLAAADELLTAMAEQVTETITEVRNLAHGIYPPLLRSSGLTEALRAAGQRSTVGVTVRADDIGRY PPDVEAAVYFCCLEALQNAAKHAPGSSVEVTLGEREGSLTFAVWDDGAGFEPESSARGHGMTNMADRIGAIGGTLRWESS PGSGTGVIGVVPVGGG >Mature_575_residues THPRRQLLTAAALAGAAVTAACAAPRLLGAGTPPWSAPLAVDAVLLTAGVAAGWAPRARRRSERVLTIAADLACLAAIAA VGLAGALATLGHRPPDGGESFTGPVLIAAALAAVLAAGARARTAALVRHAVRGARYAPDDVLRTFGEDASRGTSLDEALA GLGDALRRSLSLQRVEIWTGAAGRLTAAVVTPESPPATAPDAGGQDAGRPAAGGPGAAGGPGAAAGGPAEVGSTIALTAG DLIVLARTRVAGPGWLSLWVPQLARRYLDAQVRVVPARAGGALLGMLVAQRPPEAPRFSEAEDRMLAELGTRVGTVLHNR QLDANLRDALTDLRHANEELRGSRARLVATADAERRRIERDLHDGAQQQLVSLAVGLRLVRDLISDGDSDGSSSNGSSSN DGDGSVPGAPERDEDLAAADELLTAMAEQVTETITEVRNLAHGIYPPLLRSSGLTEALRAAGQRSTVGVTVRADDIGRYP PDVEAAVYFCCLEALQNAAKHAPGSSVEVTLGEREGSLTFAVWDDGAGFEPESSARGHGMTNMADRIGAIGGTLRWESSP GSGTGVIGVVPVGGG
Specific function: Sensor in the two-component regulatory system ComP/ComA involved in a major quorum response pathway that regulates the development of genetic competence. Plays a role in sporulation, at least partly interchangeable with that of SpoIIJ. Probably activates
COG id: COG4564
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011712 - InterPro: IPR005467 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 58684; Mature: 58552
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00533 PORPHOBILINOGEN_DEAM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPRRQLLTAAALAGAAVTAACAAPRLLGAGTPPWSAPLAVDAVLLTAGVAAGWAPRAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH RRSERVLTIAADLACLAAIAAVGLAGALATLGHRPPDGGESFTGPVLIAAALAAVLAAGA HHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC RARTAALVRHAVRGARYAPDDVLRTFGEDASRGTSLDEALAGLGDALRRSLSLQRVEIWT HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHEEEEEE GAAGRLTAAVVTPESPPATAPDAGGQDAGRPAAGGPGAAGGPGAAAGGPAEVGSTIALTA CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEC GDLIVLARTRVAGPGWLSLWVPQLARRYLDAQVRVVPARAGGALLGMLVAQRPPEAPRFS CCEEEEEEHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC EAEDRMLAELGTRVGTVLHNRQLDANLRDALTDLRHANEELRGSRARLVATADAERRRIE CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH RDLHDGAQQQLVSLAVGLRLVRDLISDGDSDGSSSNGSSSNDGDGSVPGAPERDEDLAAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH DELLTAMAEQVTETITEVRNLAHGIYPPLLRSSGLTEALRAAGQRSTVGVTVRADDIGRY HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCC PPDVEAAVYFCCLEALQNAAKHAPGSSVEVTLGEREGSLTFAVWDDGAGFEPESSARGHG CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC MTNMADRIGAIGGTLRWESSPGSGTGVIGVVPVGGG CHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCC >Mature Secondary Structure THPRRQLLTAAALAGAAVTAACAAPRLLGAGTPPWSAPLAVDAVLLTAGVAAGWAPRAR CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH RRSERVLTIAADLACLAAIAAVGLAGALATLGHRPPDGGESFTGPVLIAAALAAVLAAGA HHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC RARTAALVRHAVRGARYAPDDVLRTFGEDASRGTSLDEALAGLGDALRRSLSLQRVEIWT HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHEEEEEE GAAGRLTAAVVTPESPPATAPDAGGQDAGRPAAGGPGAAGGPGAAAGGPAEVGSTIALTA CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEC GDLIVLARTRVAGPGWLSLWVPQLARRYLDAQVRVVPARAGGALLGMLVAQRPPEAPRFS CCEEEEEEHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC EAEDRMLAELGTRVGTVLHNRQLDANLRDALTDLRHANEELRGSRARLVATADAERRRIE CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH RDLHDGAQQQLVSLAVGLRLVRDLISDGDSDGSSSNGSSSNDGDGSVPGAPERDEDLAAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH DELLTAMAEQVTETITEVRNLAHGIYPPLLRSSGLTEALRAAGQRSTVGVTVRADDIGRY HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCC PPDVEAAVYFCCLEALQNAAKHAPGSSVEVTLGEREGSLTFAVWDDGAGFEPESSARGHG CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC MTNMADRIGAIGGTLRWESSPGSGTGVIGVVPVGGG CHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2116363; 9274030; 9384377; 1715859 [H]