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The map label for this gene is frc [H]

Identifier: 158318210

GI number: 158318210

Start: 7871523

End: 7872923

Strand: Reverse

Name: frc [H]

Synonym: Franean1_6475

Alternate gene names: 158318210

Gene position: 7872923-7871523 (Counterclockwise)

Preceding gene: 158318211

Following gene: 158318209

Centisome position: 87.65

GC content: 74.59

Gene sequence:

>1401_bases
ATGTCCGACAACTCGATGATCGCCGCCCAGGTCGCGACGCTCGTCGACGAACCGGGAGTCACCGAACGCCTGACCGTGAC
CGGCCCCCCGGACGTCCTGCCGAGCCTTTACCAGGTGACAACCATTGCGACGGCCAGCGTCGCCGCCGCGTCCGTCGGCG
CGGGCCGGTTACTGGCCGCGCGCAACGGGAGCCCGTCCCAGCCGGCGGTCACCGTTGACACCCGGCACGCCAGCGCGGCC
TTCCGTAGCGAGCGGTACCTGCGGCTCGACGGACGTCCGCTGCCCAACCCCTGGGACCCGATCTCGGGCTACTACCGGAC
GGCCGACGACCGGTGGATCCAGCTGCACTGCAACTTCCCGCATCATCGCAACGGCATTCTGGAACTGCTCGACACGCCGA
ACGACCGGGCGGCGGTCGAGCGGTCGGTGGCCCGTTTCGAGGCCGAGTCCCTCGAGCTCGAGCTCCAGGCGATGGGGATG
TGCGCCACGATGGCGCGCGACGAGGACGAGTGGCGGGCGCACCGGCAGGCCAAGGCCGTCGCCGAGCTGCCCGTGCTGGA
GACCGAGCGGATCGGGGACGCCCCCGCGCTGCGGCCCGAGCCGGCGGACCTGCCGGCCGAGGGTATCCGCGTGGTGGACA
TGACGCGGGTCATCGCCGGCCCGGTCTGCGGGCGGACGCTGGCCTCCCACGGCGCCGAGGTGTTGCGGGTCGGCGCCGCG
CATCTGCCGGAGGTCCGGTCGGCGCTGATGGACACCGGGTTCGGCAAGCGCAACACCTTCCTGAACCTGCGCGTCGCCGC
GGACGCCCGCAGGCTGCAGGAGCTCGTCTCGACGGCGGACGTCGTGCTCCAGGCGTACCGCCCGCGCGCCCTGGACAGGC
TGGGCTTCGGTCCGGACGCGCTGGCGCGCCTGCGCCCGGGGATCGTCGTCGCGACGATCAGTGCCTACGGCCGGAGCGGG
CCGTGGAGCGGCCTGCGGGGCTTCGACAGCCTGGTCCAGACGGCGTCGGGCATCTCGTGGGCGGAGGCCGAGGCCAGCGG
GGAGGAGGCGCCCCGTCCGCTGCCCGCCCAGGCTCTCGACCACGCGACCGGGTATCTGGCGGCGCACGGCGTGCTGTCGG
CGCTGGCCCGGCGCGCGGTGGAGGGCGGCAGCTGGCAGGTGCGGGTCTCGCTGGCCCAGACCGGCCGGTGGTTGCAGAGC
CTCGGCCACCACGACACCCTCGCCGCCCCGGACCCGACCCGGGCCGACGCGGAGGAGTTCTGCCGGCGCCTGCGCAGCGA
GTTCGGGGAGCTCTCCTACGTGGCCCCACCGGGAACGGTCGACGGCCGGGCACCGGCCTGGACGATGGCGCCCGCCTCGC
TGGGCACCAGCCCGCCCGACTGGGAGCCCCGCCCGGCCTGA

Upstream 100 bases:

>100_bases
AGCCTCACTCTGGGACATGATCTGGGGGCGGGAGCAGCCCGGACGGTTCGTCCGGTGACACATCAGGCGACACGCGTGAT
CCGCTTTACAGGATGGGGAT

Downstream 100 bases:

>100_bases
CCGCCCGGCCCGGGCGTGCGGCCCGGGCGTGCGGCCCGATCGGGCCGTTCGTGCCATGTGGCAGGTCGACGTCGCGTAGG
ACTGGGTCTGCGACATCTCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSDNSMIAAQVATLVDEPGVTERLTVTGPPDVLPSLYQVTTIATASVAAASVGAGRLLAARNGSPSQPAVTVDTRHASAA
FRSERYLRLDGRPLPNPWDPISGYYRTADDRWIQLHCNFPHHRNGILELLDTPNDRAAVERSVARFEAESLELELQAMGM
CATMARDEDEWRAHRQAKAVAELPVLETERIGDAPALRPEPADLPAEGIRVVDMTRVIAGPVCGRTLASHGAEVLRVGAA
HLPEVRSALMDTGFGKRNTFLNLRVAADARRLQELVSTADVVLQAYRPRALDRLGFGPDALARLRPGIVVATISAYGRSG
PWSGLRGFDSLVQTASGISWAEAEASGEEAPRPLPAQALDHATGYLAAHGVLSALARRAVEGGSWQVRVSLAQTGRWLQS
LGHHDTLAAPDPTRADAEEFCRRLRSEFGELSYVAPPGTVDGRAPAWTMAPASLGTSPPDWEPRPA

Sequences:

>Translated_466_residues
MSDNSMIAAQVATLVDEPGVTERLTVTGPPDVLPSLYQVTTIATASVAAASVGAGRLLAARNGSPSQPAVTVDTRHASAA
FRSERYLRLDGRPLPNPWDPISGYYRTADDRWIQLHCNFPHHRNGILELLDTPNDRAAVERSVARFEAESLELELQAMGM
CATMARDEDEWRAHRQAKAVAELPVLETERIGDAPALRPEPADLPAEGIRVVDMTRVIAGPVCGRTLASHGAEVLRVGAA
HLPEVRSALMDTGFGKRNTFLNLRVAADARRLQELVSTADVVLQAYRPRALDRLGFGPDALARLRPGIVVATISAYGRSG
PWSGLRGFDSLVQTASGISWAEAEASGEEAPRPLPAQALDHATGYLAAHGVLSALARRAVEGGSWQVRVSLAQTGRWLQS
LGHHDTLAAPDPTRADAEEFCRRLRSEFGELSYVAPPGTVDGRAPAWTMAPASLGTSPPDWEPRPA
>Mature_465_residues
SDNSMIAAQVATLVDEPGVTERLTVTGPPDVLPSLYQVTTIATASVAAASVGAGRLLAARNGSPSQPAVTVDTRHASAAF
RSERYLRLDGRPLPNPWDPISGYYRTADDRWIQLHCNFPHHRNGILELLDTPNDRAAVERSVARFEAESLELELQAMGMC
ATMARDEDEWRAHRQAKAVAELPVLETERIGDAPALRPEPADLPAEGIRVVDMTRVIAGPVCGRTLASHGAEVLRVGAAH
LPEVRSALMDTGFGKRNTFLNLRVAADARRLQELVSTADVVLQAYRPRALDRLGFGPDALARLRPGIVVATISAYGRSGP
WSGLRGFDSLVQTASGISWAEAEASGEEAPRPLPAQALDHATGYLAAHGVLSALARRAVEGGSWQVRVSLAQTGRWLQSL
GHHDTLAAPDPTRADAEEFCRRLRSEFGELSYVAPPGTVDGRAPAWTMAPASLGTSPPDWEPRPA

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=195, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI266456254, Length=195, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI300863128, Length=199, Percent_Identity=26.1306532663317, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI300863124, Length=199, Percent_Identity=26.1306532663317, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI266458397, Length=195, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI266458393, Length=195, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI300863126, Length=146, Percent_Identity=27.3972602739726, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=34.1269841269841, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=34.1269841269841, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI87082093, Length=186, Percent_Identity=29.0322580645161, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788717, Length=145, Percent_Identity=26.2068965517241, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=201, Percent_Identity=32.3383084577114, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=181, Percent_Identity=34.2541436464088, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648431, Length=189, Percent_Identity=27.5132275132275, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24585488, Length=198, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 50039; Mature: 49908

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNSMIAAQVATLVDEPGVTERLTVTGPPDVLPSLYQVTTIATASVAAASVGAGRLLAA
CCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
RNGSPSQPAVTVDTRHASAAFRSERYLRLDGRPLPNPWDPISGYYRTADDRWIQLHCNFP
CCCCCCCCEEEEECCHHHHHHHCCCEEEECCCCCCCCCCCCCCCEECCCCCEEEEEECCC
HHRNGILELLDTPNDRAAVERSVARFEAESLELELQAMGMCATMARDEDEWRAHRQAKAV
CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHH
AELPVLETERIGDAPALRPEPADLPAEGIRVVDMTRVIAGPVCGRTLASHGAEVLRVGAA
HHCCCCCHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
HLPEVRSALMDTGFGKRNTFLNLRVAADARRLQELVSTADVVLQAYRPRALDRLGFGPDA
HHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHH
LARLRPGIVVATISAYGRSGPWSGLRGFDSLVQTASGISWAEAEASGEEAPRPLPAQALD
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHH
HATGYLAAHGVLSALARRAVEGGSWQVRVSLAQTGRWLQSLGHHDTLAAPDPTRADAEEF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
CRRLRSEFGELSYVAPPGTVDGRAPAWTMAPASLGTSPPDWEPRPA
HHHHHHHHCCEEEECCCCCCCCCCCCEEECCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SDNSMIAAQVATLVDEPGVTERLTVTGPPDVLPSLYQVTTIATASVAAASVGAGRLLAA
CCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
RNGSPSQPAVTVDTRHASAAFRSERYLRLDGRPLPNPWDPISGYYRTADDRWIQLHCNFP
CCCCCCCCEEEEECCHHHHHHHCCCEEEECCCCCCCCCCCCCCCEECCCCCEEEEEECCC
HHRNGILELLDTPNDRAAVERSVARFEAESLELELQAMGMCATMARDEDEWRAHRQAKAV
CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCHHHHHHHHHHHH
AELPVLETERIGDAPALRPEPADLPAEGIRVVDMTRVIAGPVCGRTLASHGAEVLRVGAA
HHCCCCCHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
HLPEVRSALMDTGFGKRNTFLNLRVAADARRLQELVSTADVVLQAYRPRALDRLGFGPDA
HHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHH
LARLRPGIVVATISAYGRSGPWSGLRGFDSLVQTASGISWAEAEASGEEAPRPLPAQALD
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHH
HATGYLAAHGVLSALARRAVEGGSWQVRVSLAQTGRWLQSLGHHDTLAAPDPTRADAEEF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
CRRLRSEFGELSYVAPPGTVDGRAPAWTMAPASLGTSPPDWEPRPA
HHHHHHHHCCEEEECCCCCCCCCCCCEEECCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]