Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

Click here to switch to the map view.

The map label for this gene is 158318090

Identifier: 158318090

GI number: 158318090

Start: 7713895

End: 7714647

Strand: Direct

Name: 158318090

Synonym: Franean1_6354

Alternate gene names: NA

Gene position: 7713895-7714647 (Clockwise)

Preceding gene: 158318089

Following gene: 158318091

Centisome position: 85.88

GC content: 66.14

Gene sequence:

>753_bases
ATGAGCTTGCGACCGGTGCTGTACTCGGAGTGGACCAAGATCAGGTCTCTCCGTTCCCTCGTCTGGTCGCTGGCACTGGC
CGCCGTCATGCTCGTCGGCTTCGGTGCCCTCGTCTGCGGAGCCTACGGCGACGCCGAGGCCGCCGAAGCGGACTACGATC
CGCTGGCGGTGGGCTTCTGGAGCCTGAACTTCGCCCAGATCGCGCTGGCTGTCTTCGCGATGCTGTCCCTCGGCGGCGAG
TACGAGAAGGGCACAATCACCACCTCGCTCACCGCCGTTCCCCAGCGGACCCTCTTCTACCTGGGCAAGCTCCTGGTCGC
TGCTGGCCTGTCACTGGCGGTTGCCCTCCTGGCAGCACCGCTGACGTTCTTCCTGACCCAGGGTCTGCTGGACGAGCACG
GGGTGTCCCTCCGCGATGCCGGCGCAGCGCGCGGCGTGATTTCTCTGATTCTCTACTTTCCGCTGCTGACTCTTCTGTGC
ATGGGCCTCGCCGCGATGACCCGTTCCGTGGCTGCGACGTTGGGCCTGTTCCTGCCGTTCCTCTTCCTGCTCTCCCCACT
GAGCATGGAGGTTCCCGGCCTGTGGACTATCACCCAGTTCCTGCCCGACCGGGCTGGGCTGTACGCGGTCATGAACCTCC
AGCCGGACCCCGACGTCCTTTACAACCCGCGGCTTGGCCTGTCCATCATGGCTGTCTGGGCGGCGGTCGCGGTCTTCGGT
GGCTGGCGTGCCCTGCGCAGCCGTGACACGTGA

Upstream 100 bases:

>100_bases
AGGAGCTTGCGCTGCACAGCGACTCCCTGGAGGAGGCGTTCCTGCGCATGACCGCGCACTCCACCGAGTTCACCGCCGCC
GGACGGGAGGGCGCTCTGAC

Downstream 100 bases:

>100_bases
CCACCGAGAGCGGACGTAGCCGTTGGGGAAATAATTATTCGCCGCCGGGACCCCCGATGGCTCACCACTGCTTCCCATTC
AGTCCACTAAAGACGAGAGG

Product: putative ABC transporter integral membrane subunit

Products: NA

Alternate protein names: ABC Transporter Integral Membrane Protein; ABC Transporter Transmembrane Protein; ABC Transporter Permease Protein; ABC-2 Type Transporter

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSLRPVLYSEWTKIRSLRSLVWSLALAAVMLVGFGALVCGAYGDAEAAEADYDPLAVGFWSLNFAQIALAVFAMLSLGGE
YEKGTITTSLTAVPQRTLFYLGKLLVAAGLSLAVALLAAPLTFFLTQGLLDEHGVSLRDAGAARGVISLILYFPLLTLLC
MGLAAMTRSVAATLGLFLPFLFLLSPLSMEVPGLWTITQFLPDRAGLYAVMNLQPDPDVLYNPRLGLSIMAVWAAVAVFG
GWRALRSRDT

Sequences:

>Translated_250_residues
MSLRPVLYSEWTKIRSLRSLVWSLALAAVMLVGFGALVCGAYGDAEAAEADYDPLAVGFWSLNFAQIALAVFAMLSLGGE
YEKGTITTSLTAVPQRTLFYLGKLLVAAGLSLAVALLAAPLTFFLTQGLLDEHGVSLRDAGAARGVISLILYFPLLTLLC
MGLAAMTRSVAATLGLFLPFLFLLSPLSMEVPGLWTITQFLPDRAGLYAVMNLQPDPDVLYNPRLGLSIMAVWAAVAVFG
GWRALRSRDT
>Mature_249_residues
SLRPVLYSEWTKIRSLRSLVWSLALAAVMLVGFGALVCGAYGDAEAAEADYDPLAVGFWSLNFAQIALAVFAMLSLGGEY
EKGTITTSLTAVPQRTLFYLGKLLVAAGLSLAVALLAAPLTFFLTQGLLDEHGVSLRDAGAARGVISLILYFPLLTLLCM
GLAAMTRSVAATLGLFLPFLFLLSPLSMEVPGLWTITQFLPDRAGLYAVMNLQPDPDVLYNPRLGLSIMAVWAAVAVFGG
WRALRSRDT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26809; Mature: 26678

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCC
>Mature Secondary Structure 
SLRPVLYSEWTKIRSLRSLVWSLALAAVMLVGFGALVCGAYGDAEAAEADYDPLAVGFW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
SLNFAQIALAVFAMLSLGGEYEKGTITTSLTAVPQRTLFYLGKLLVAAGLSLAVALLAAP
HHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTFFLTQGLLDEHGVSLRDAGAARGVISLILYFPLLTLLCMGLAAMTRSVAATLGLFLPF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLLSPLSMEVPGLWTITQFLPDRAGLYAVMNLQPDPDVLYNPRLGLSIMAVWAAVAVFG
HHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHH
GWRALRSRDT
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA