| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318026
Identifier: 158318026
GI number: 158318026
Start: 7634331
End: 7635749
Strand: Reverse
Name: 158318026
Synonym: Franean1_6286
Alternate gene names: NA
Gene position: 7635749-7634331 (Counterclockwise)
Preceding gene: 158318032
Following gene: 158318025
Centisome position: 85.01
GC content: 68.78
Gene sequence:
>1419_bases GTGTCCCGCCGTGCACAACCCATGACACAGTGCGTGACATGGCTGTGGAAGGGTGAGAACTTCTTCTCAGGGGTGAGACA CCTATGTCACTGCGGCCAGACGAGGGGGACCGCCGTGCATGATGCCGACACGCTGAAACAGCAGCTTGCGGCACGTTTCA GGCAGCTCCAGGGCGAGCACGGCCTCTCCGCGGTGCAACTCGAACAACGCACGACGTACGACCGGAAGTACGTCGGGTGG CTCCGGAATCGTGGTCGTCTTCCAGCACGTCATGTCCTGGTCGCGCTCGACGAGGTGTTCGGGACCGGTCAGGAACTCGC CGACCTGGGCGACGAGATCCGCGCAGCGCAGAACGACGAACGGTTGCGGCACAAGTCAGGCAAGCTGCGGCAGGAACCGG TGCTGGACCATGAGGGGGTGGACCCGACGAACCGGCGGGAACTGCTTCAGACTGGTGCGATCTCGGCACTCGCCGGGGTC GCGGCCGAGCGCAGCGTTGAGGTCGCCAGTGCCGACCTGGCGCCCCCGAAGCTGATCGAAATCGAAGAGGATATTGATCG GTTCGCGGCCGAATACACCCTGCACCCCCACGAGATCTTGGCCCCGCAGGTGGTCCAGCGCTGGCGGCAGGTAGACGCAG CTCTCGGCCGCCGCGGGTCCTGGGCGGCCCGGAGGCGGCTCACCGCCGCCGCTGGACGTCTCACCTACTACCTGTCCCGG CTGGCATTCAACACCGGAGATTTCGGGTCCGCGGTGCGTCTCGCAGCCCTCGCCGATCAGTACGCCGCGCAGGTCGGTGA CCAGGTCGTGCAGGCGTCGGTCGCCGGGATGACCTCCGGCGTGGCGTTCTACCGGCACCAGTACGACGACGCCACGGCAG CTTTCACCGCAGCGGATCCGCCGTACCTGCGCGCCCGGAACGCCGCCTACCGGGCGAGGGCCTACGCCGCGACCGGCAAT GCGGAGCTCGCACAGGCCGAGCTTGACACCATGTGGTCATCACAGCTCGCAGGCACCCCCCAACCGGGAGACCTGCCACT CAGCATCGCCGGCGCGGAGATGTTCACCGCCGTGGCGCTCGTCCGTCTGGGCGACGGCAAACGCGCCGAGCCCCACGCCC GGGAGTCCGTTGCAGGGCACGAGGCATCCGGGCCCGCGGCGCACCCCGAAGAGTTCGGCCACGCGCTGTGCATGCTCGCG AATACGCTTCTTCTGCGCCCCCACCCGGAGCCGGAGGAAGCGGCAGCGCTGGGACGGCGAGCGCTCACCGTCCTGAATGG CCATCCCACGCACACCGTGGCCGTCCGCGCACGTCTGCTCGGCGAGGATCTCCGCCCGTTCGCGGCGGTGCCCGCTGTCG CCGAGTTCCGCGAGCTCGCTCATACCGCTGGCCGCCCGGCGCTTACCGGGGCACGGTAG
Upstream 100 bases:
>100_bases TGGGCCGTGTGGCCGCAGGCAGGCATCCGGCCGGCGGACCCGGGGGCGTCCGGTGGTGTCACGTTCCGCTCCTCTGCAGG TCCGGGAGAGTGGCCGGCGT
Downstream 100 bases:
>100_bases GGGAATGCAGCTCGCCGATCCGACGGTCATCGAGATCCCCACCGTCCTGACCTCGCGGCTGGTCCTGCGGGGCTGGCGGG CCGCGGACGTCGATCCCTAC
Product: putative HTH-type transcriptional regulator
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MSRRAQPMTQCVTWLWKGENFFSGVRHLCHCGQTRGTAVHDADTLKQQLAARFRQLQGEHGLSAVQLEQRTTYDRKYVGW LRNRGRLPARHVLVALDEVFGTGQELADLGDEIRAAQNDERLRHKSGKLRQEPVLDHEGVDPTNRRELLQTGAISALAGV AAERSVEVASADLAPPKLIEIEEDIDRFAAEYTLHPHEILAPQVVQRWRQVDAALGRRGSWAARRRLTAAAGRLTYYLSR LAFNTGDFGSAVRLAALADQYAAQVGDQVVQASVAGMTSGVAFYRHQYDDATAAFTAADPPYLRARNAAYRARAYAATGN AELAQAELDTMWSSQLAGTPQPGDLPLSIAGAEMFTAVALVRLGDGKRAEPHARESVAGHEASGPAAHPEEFGHALCMLA NTLLLRPHPEPEEAAALGRRALTVLNGHPTHTVAVRARLLGEDLRPFAAVPAVAEFRELAHTAGRPALTGAR
Sequences:
>Translated_472_residues MSRRAQPMTQCVTWLWKGENFFSGVRHLCHCGQTRGTAVHDADTLKQQLAARFRQLQGEHGLSAVQLEQRTTYDRKYVGW LRNRGRLPARHVLVALDEVFGTGQELADLGDEIRAAQNDERLRHKSGKLRQEPVLDHEGVDPTNRRELLQTGAISALAGV AAERSVEVASADLAPPKLIEIEEDIDRFAAEYTLHPHEILAPQVVQRWRQVDAALGRRGSWAARRRLTAAAGRLTYYLSR LAFNTGDFGSAVRLAALADQYAAQVGDQVVQASVAGMTSGVAFYRHQYDDATAAFTAADPPYLRARNAAYRARAYAATGN AELAQAELDTMWSSQLAGTPQPGDLPLSIAGAEMFTAVALVRLGDGKRAEPHARESVAGHEASGPAAHPEEFGHALCMLA NTLLLRPHPEPEEAAALGRRALTVLNGHPTHTVAVRARLLGEDLRPFAAVPAVAEFRELAHTAGRPALTGAR >Mature_471_residues SRRAQPMTQCVTWLWKGENFFSGVRHLCHCGQTRGTAVHDADTLKQQLAARFRQLQGEHGLSAVQLEQRTTYDRKYVGWL RNRGRLPARHVLVALDEVFGTGQELADLGDEIRAAQNDERLRHKSGKLRQEPVLDHEGVDPTNRRELLQTGAISALAGVA AERSVEVASADLAPPKLIEIEEDIDRFAAEYTLHPHEILAPQVVQRWRQVDAALGRRGSWAARRRLTAAAGRLTYYLSRL AFNTGDFGSAVRLAALADQYAAQVGDQVVQASVAGMTSGVAFYRHQYDDATAAFTAADPPYLRARNAAYRARAYAATGNA ELAQAELDTMWSSQLAGTPQPGDLPLSIAGAEMFTAVALVRLGDGKRAEPHARESVAGHEASGPAAHPEEFGHALCMLAN TLLLRPHPEPEEAAALGRRALTVLNGHPTHTVAVRARLLGEDLRPFAAVPAVAEFRELAHTAGRPALTGAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51351; Mature: 51220
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRAQPMTQCVTWLWKGENFFSGVRHLCHCGQTRGTAVHDADTLKQQLAARFRQLQGEH CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC GLSAVQLEQRTTYDRKYVGWLRNRGRLPARHVLVALDEVFGTGQELADLGDEIRAAQNDE CCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH RLRHKSGKLRQEPVLDHEGVDPTNRRELLQTGAISALAGVAAERSVEVASADLAPPKLIE HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEE IEEDIDRFAAEYTLHPHEILAPQVVQRWRQVDAALGRRGSWAARRRLTAAAGRLTYYLSR HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LAFNTGDFGSAVRLAALADQYAAQVGDQVVQASVAGMTSGVAFYRHQYDDATAAFTAADP HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCC PYLRARNAAYRARAYAATGNAELAQAELDTMWSSQLAGTPQPGDLPLSIAGAEMFTAVAL CHHHHCCHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH VRLGDGKRAEPHARESVAGHEASGPAAHPEEFGHALCMLANTLLLRPHPEPEEAAALGRR HHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ALTVLNGHPTHTVAVRARLLGEDLRPFAAVPAVAEFRELAHTAGRPALTGAR HHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SRRAQPMTQCVTWLWKGENFFSGVRHLCHCGQTRGTAVHDADTLKQQLAARFRQLQGEH CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC GLSAVQLEQRTTYDRKYVGWLRNRGRLPARHVLVALDEVFGTGQELADLGDEIRAAQNDE CCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH RLRHKSGKLRQEPVLDHEGVDPTNRRELLQTGAISALAGVAAERSVEVASADLAPPKLIE HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEE IEEDIDRFAAEYTLHPHEILAPQVVQRWRQVDAALGRRGSWAARRRLTAAAGRLTYYLSR HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH LAFNTGDFGSAVRLAALADQYAAQVGDQVVQASVAGMTSGVAFYRHQYDDATAAFTAADP HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCC PYLRARNAAYRARAYAATGNAELAQAELDTMWSSQLAGTPQPGDLPLSIAGAEMFTAVAL CHHHHCCHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH VRLGDGKRAEPHARESVAGHEASGPAAHPEEFGHALCMLANTLLLRPHPEPEEAAALGRR HHCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH ALTVLNGHPTHTVAVRARLLGEDLRPFAAVPAVAEFRELAHTAGRPALTGAR HHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA