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The map label for this gene is araC [C]

Identifier: 158317964

GI number: 158317964

Start: 7559173

End: 7560276

Strand: Reverse

Name: araC [C]

Synonym: Franean1_6224

Alternate gene names: 158317964

Gene position: 7560276-7559173 (Counterclockwise)

Preceding gene: 158317967

Following gene: 158317963

Centisome position: 84.17

GC content: 71.11

Gene sequence:

>1104_bases
GTGGCCGCCGTGGGAACGAGATCGTGTGGGCCGGGGCTGACGAGGGCGGTTTCGCCGGGGCCGTGGTCACGCCCTGCCGC
CTGGGATGCTGGCAAGTCTCTTGCCCGTGAGCACATGCACGGCTTGATGTGCCCGCGGTGCACGGTGGTTGCCCCGCCAA
CTGCAGGCCTACCTGCGCTGGCGCAACGCCGGGTTCACCGTCGCCGTCGATTACACGGCCGACATGCTGGGGACGGCGAA
CACCGTGGTTCTCGCGCCGGTCCATCCGCAGGAGGCCGGCTCGTCCCGCTGGCCCGGATCGGACGAGCCGGACGAACGGA
GCAGGTTGGTCGACCCCGGTCAGTCGCCCTGGTGGCCTCGGCCCTCGCCAGGGTCGCGGCGGGCACTCGGGTCGTCTCGA
TCTGCACGGCGTCGTTCCTGCTCGCAGCCACCGGGCTGCTTGACGGACGCCGGGCCACCACGCACTGGTTCGAGGCCGAG
CGCCTGGCCCGGATGTTCCCCCGGGTGACGGTCGACCCCGACGTCCTGTTCGTCGATGACGGGGACGTGCTGACCTCGGC
GGGCGCCGCGTCCGGCATTGATCTGTGCCTGCACCTCGTCCGCCGCGATCATGGCAGCGAGGTCGCGAACCGCGCGGCCC
GCCGCTGTGTCGTGCCGCCCTGGCGCGACGGCGGCCAGGCGCAGTGCATCGAGCGCCCTGTACCGCCGCCCTCCGGGACG
AGCACGGCCGGTACCCGGGAGTGGATGCTTCGTCGCCTGGGCGAGCCGACCAGCCTCTCCGAGCTCGCTGCACACGCGCG
AATGAGCGTGCGGACATTCAGCCGCAGGTTCCGGGACGAGGTGGGCCTCCCACCCGGGCAGTGGCTGACCGGGCAACGGG
TCGAGCGGGCCAGGTATCTGCTCGAGAGCAGCGACCTGCCGATCGACCAGGTCGCCCGGCACACGGGCTTCGCGACCGGG
ATCTCGCTGCGTCAGCACTTCCGAGCCGCGACGGGTGTCTCACCAACTGCCCACCGGCAGACCTTCCGTGATCGCGGCGG
TGCGACCCTCACACCTCGTTCGGGGTCCAGCAGCGCTGTACTTAATCCACTGGATCGTTGGTAG

Upstream 100 bases:

>100_bases
CCGCGGCCTGCGCGCTGAAGCACGCGAGCAAGGCACGCACGTCGGCGATGGGTTCGCCTGCTGGGAGCCTGCGTAGGGCC
GCGCGGAGCGTCGGCGAACT

Downstream 100 bases:

>100_bases
TCGGGTCTGTCGCAGGTCAGCATGGGTGTGGTGCCCCTGGTAGTGCCCTGGCTCAGGACATGCGAATAGCGTGTCTCGGG
ACATCAGCCCCTTGGTCGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Transcriptional Regulator AraC Family; Transcriptional Activator FtrA; Transcriptional Regulator; ADPA Family Transcriptional Regulator; ThiJ/PfpI Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; ADPA-Family Transcriptional Regulator; AraC Family Regulatory Protein; A-Factor-Responsive Transcriptional Activator; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Regulator; DJ-1/PfpI Family; AraC Family Transcriptional Regulatory Protein; AraC-Family Protein Transcriptional Regulator; Sulfate Permease Andrelated Transporter

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MAAVGTRSCGPGLTRAVSPGPWSRPAAWDAGKSLAREHMHGLMCPRCTVVAPPTAGLPALAQRRVHRRRRLHGRHAGDGE
HRGSRAGPSAGGRLVPLARIGRAGRTEQVGRPRSVALVASALARVAAGTRVVSICTASFLLAATGLLDGRRATTHWFEAE
RLARMFPRVTVDPDVLFVDDGDVLTSAGAASGIDLCLHLVRRDHGSEVANRAARRCVVPPWRDGGQAQCIERPVPPPSGT
STAGTREWMLRRLGEPTSLSELAAHARMSVRTFSRRFRDEVGLPPGQWLTGQRVERARYLLESSDLPIDQVARHTGFATG
ISLRQHFRAATGVSPTAHRQTFRDRGGATLTPRSGSSSAVLNPLDRW

Sequences:

>Translated_367_residues
MAAVGTRSCGPGLTRAVSPGPWSRPAAWDAGKSLAREHMHGLMCPRCTVVAPPTAGLPALAQRRVHRRRRLHGRHAGDGE
HRGSRAGPSAGGRLVPLARIGRAGRTEQVGRPRSVALVASALARVAAGTRVVSICTASFLLAATGLLDGRRATTHWFEAE
RLARMFPRVTVDPDVLFVDDGDVLTSAGAASGIDLCLHLVRRDHGSEVANRAARRCVVPPWRDGGQAQCIERPVPPPSGT
STAGTREWMLRRLGEPTSLSELAAHARMSVRTFSRRFRDEVGLPPGQWLTGQRVERARYLLESSDLPIDQVARHTGFATG
ISLRQHFRAATGVSPTAHRQTFRDRGGATLTPRSGSSSAVLNPLDRW
>Mature_366_residues
AAVGTRSCGPGLTRAVSPGPWSRPAAWDAGKSLAREHMHGLMCPRCTVVAPPTAGLPALAQRRVHRRRRLHGRHAGDGEH
RGSRAGPSAGGRLVPLARIGRAGRTEQVGRPRSVALVASALARVAAGTRVVSICTASFLLAATGLLDGRRATTHWFEAER
LARMFPRVTVDPDVLFVDDGDVLTSAGAASGIDLCLHLVRRDHGSEVANRAARRCVVPPWRDGGQAQCIERPVPPPSGTS
TAGTREWMLRRLGEPTSLSELAAHARMSVRTFSRRFRDEVGLPPGQWLTGQRVERARYLLESSDLPIDQVARHTGFATGI
SLRQHFRAATGVSPTAHRQTFRDRGGATLTPRSGSSSAVLNPLDRW

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39511; Mature: 39379

Theoretical pI: Translated: 12.10; Mature: 12.10

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVGTRSCGPGLTRAVSPGPWSRPAAWDAGKSLAREHMHGLMCPRCTVVAPPTAGLPAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH
AQRRVHRRRRLHGRHAGDGEHRGSRAGPSAGGRLVPLARIGRAGRTEQVGRPRSVALVAS
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCHHHCCCCHHHHHHHH
ALARVAAGTRVVSICTASFLLAATGLLDGRRATTHWFEAERLARMFPRVTVDPDVLFVDD
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECC
GDVLTSAGAASGIDLCLHLVRRDHGSEVANRAARRCVVPPWRDGGQAQCIERPVPPPSGT
CCHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC
STAGTREWMLRRLGEPTSLSELAAHARMSVRTFSRRFRDEVGLPPGQWLTGQRVERARYL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LESSDLPIDQVARHTGFATGISLRQHFRAATGVSPTAHRQTFRDRGGATLTPRSGSSSAV
HHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCCCCC
LNPLDRW
CCHHCCC
>Mature Secondary Structure 
AAVGTRSCGPGLTRAVSPGPWSRPAAWDAGKSLAREHMHGLMCPRCTVVAPPTAGLPAL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH
AQRRVHRRRRLHGRHAGDGEHRGSRAGPSAGGRLVPLARIGRAGRTEQVGRPRSVALVAS
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCHHHCCCCHHHHHHHH
ALARVAAGTRVVSICTASFLLAATGLLDGRRATTHWFEAERLARMFPRVTVDPDVLFVDD
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECC
GDVLTSAGAASGIDLCLHLVRRDHGSEVANRAARRCVVPPWRDGGQAQCIERPVPPPSGT
CCHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCC
STAGTREWMLRRLGEPTSLSELAAHARMSVRTFSRRFRDEVGLPPGQWLTGQRVERARYL
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LESSDLPIDQVARHTGFATGISLRQHFRAATGVSPTAHRQTFRDRGGATLTPRSGSSSAV
HHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCCCCC
LNPLDRW
CCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA