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The map label for this gene is fimB [C]

Identifier: 158317961

GI number: 158317961

Start: 7556429

End: 7556857

Strand: Direct

Name: fimB [C]

Synonym: Franean1_6221

Alternate gene names: 158317961

Gene position: 7556429-7556857 (Clockwise)

Preceding gene: 158317958

Following gene: 158317962

Centisome position: 84.13

GC content: 69.0

Gene sequence:

>429_bases
ATGTCACCACCGAAGGTCGACGAGAAGCCCGTCCCGGTGCTGCACGAGGACGAGATCCGGGCCGTTCTGGCCACCTGCGC
CGGCAAGACCTTCGCTGATCGTCGCGACAACGCGATCATCCGCTGCCTGCTCGACTCCGGTGAACGACGCACCGAGATCG
CCAAGCTCCGCGTCGATGACATTGACCTCACGCGGAAGGTGCTGCACGTGCTCGGCAAGGGGCACCGGCCCCGACCGGCC
CCGACCGGCAACAACACCCCGCTTGCCCTCGGCCGCTACATGCGGATGCGCGCCCGCGACAAGAATGCCAGTCGTCCGGA
GCTGTGGCTTGCCGACCGCGGCCGTGGCCCGCTCACCGGTGACGGGCTCGCCCAGATGGTCGGGCGACGCGGGGAGCAGG
CGGGCATCAAGGGACTGCATCCGCACTAG

Upstream 100 bases:

>100_bases
GGTCGTGGCAACGCCTATGTGAACCAGACCTTCCGCGCCCTTCAGCAGTGGTTCAAGTGGCTCCTCGACGAGGAGGAGAT
CGCACTCGCCGCTGGAGCGG

Downstream 100 bases:

>100_bases
TTCCGGCATACGTGGTCTGGTACCGGTGGACAACCATGGCCATGCTCGCCCACGCTTTCCTCGCCGTCCTGGACACCGTG
ATGAACGCCGCCGGGCCCAC

Product: site-specific recombinase XerD-like protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase XerD; Site-Specific Recombinase; Phage Integrase Family Site-Specific Recombinase; Site-Specific Recombinase XerD-Like Protein

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSPPKVDEKPVPVLHEDEIRAVLATCAGKTFADRRDNAIIRCLLDSGERRTEIAKLRVDDIDLTRKVLHVLGKGHRPRPA
PTGNNTPLALGRYMRMRARDKNASRPELWLADRGRGPLTGDGLAQMVGRRGEQAGIKGLHPH

Sequences:

>Translated_142_residues
MSPPKVDEKPVPVLHEDEIRAVLATCAGKTFADRRDNAIIRCLLDSGERRTEIAKLRVDDIDLTRKVLHVLGKGHRPRPA
PTGNNTPLALGRYMRMRARDKNASRPELWLADRGRGPLTGDGLAQMVGRRGEQAGIKGLHPH
>Mature_141_residues
SPPKVDEKPVPVLHEDEIRAVLATCAGKTFADRRDNAIIRCLLDSGERRTEIAKLRVDDIDLTRKVLHVLGKGHRPRPAP
TGNNTPLALGRYMRMRARDKNASRPELWLADRGRGPLTGDGLAQMVGRRGEQAGIKGLHPH

Specific function: Fimb Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fimb Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15736; Mature: 15605

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPKVDEKPVPVLHEDEIRAVLATCAGKTFADRRDNAIIRCLLDSGERRTEIAKLRVDD
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCHHHHHHHCCCC
IDLTRKVLHVLGKGHRPRPAPTGNNTPLALGRYMRMRARDKNASRPELWLADRGRGPLTG
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
DGLAQMVGRRGEQAGIKGLHPH
CHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPPKVDEKPVPVLHEDEIRAVLATCAGKTFADRRDNAIIRCLLDSGERRTEIAKLRVDD
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCCCHHHHHHHCCCC
IDLTRKVLHVLGKGHRPRPAPTGNNTPLALGRYMRMRARDKNASRPELWLADRGRGPLTG
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
DGLAQMVGRRGEQAGIKGLHPH
CHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA