| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is bcp [H]
Identifier: 158317932
GI number: 158317932
Start: 7522055
End: 7522528
Strand: Direct
Name: bcp [H]
Synonym: Franean1_6190
Alternate gene names: 158317932
Gene position: 7522055-7522528 (Clockwise)
Preceding gene: 158317931
Following gene: 158317933
Centisome position: 83.75
GC content: 66.03
Gene sequence:
>474_bases ATGGCGACGCCCGCGATCGGTCAGCCGGCGCCCGACTTCACGCTGCCCGGCCTGACGCTGACCGGTGAGGAGGCCACCCG GTCCGAGTTCACCCTCTCCGGGGAGCGGGGCCACCCGGTCGTCCTCGCCTTCTACCCGGGTGACAACACTCCGGTCTGCA CGAAGCAGATGTGTTCCTACGCCGCCGGCATCGAGGTGTTCCGTGACCTCGGGGCCCTGGTCTGGGGAATCAGCCCGCAG GACCTCGACAGCCACGAAGCCTTCGCCCGTTCGTATTCTCTCAGCTTTCCCCTGCTCGCGGACGACGACCGCACGGTCGT CAAGCAGTATGGCATCTCCCTGCCAGGACTCGGACTACGCCGGTCGGTGTTCCTCGTGGATGCGAACGGCATACTACGCT GGAAGCAGGTCGGGCTGATCGGTGTGACCTACTCCGACGTGGAGACGATCGCCAAGCAGCTCGCTCAGCTCTGA
Upstream 100 bases:
>100_bases GACGATCCCACCAGGCGGGTTCACCCCGGCTGCCCCCGTGACCCGGGCCGCCGTGTCATGCCCGGCGGGTCGCTCGGCCG CGAGTGGGGGGTGGCCTGAG
Downstream 100 bases:
>100_bases GCACACGTTCCGCCCTGAGCACACGTTCTGCTCTGAACACGTGCTCGGTGTGGCTCGTGGCATCGCGGGCGGCTCCAGGT TGTAGGCCGTAGGACCGGAG
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MATPAIGQPAPDFTLPGLTLTGEEATRSEFTLSGERGHPVVLAFYPGDNTPVCTKQMCSYAAGIEVFRDLGALVWGISPQ DLDSHEAFARSYSLSFPLLADDDRTVVKQYGISLPGLGLRRSVFLVDANGILRWKQVGLIGVTYSDVETIAKQLAQL
Sequences:
>Translated_157_residues MATPAIGQPAPDFTLPGLTLTGEEATRSEFTLSGERGHPVVLAFYPGDNTPVCTKQMCSYAAGIEVFRDLGALVWGISPQ DLDSHEAFARSYSLSFPLLADDDRTVVKQYGISLPGLGLRRSVFLVDANGILRWKQVGLIGVTYSDVETIAKQLAQL >Mature_156_residues ATPAIGQPAPDFTLPGLTLTGEEATRSEFTLSGERGHPVVLAFYPGDNTPVCTKQMCSYAAGIEVFRDLGALVWGISPQD LDSHEAFARSYSLSFPLLADDDRTVVKQYGISLPGLGLRRSVFLVDANGILRWKQVGLIGVTYSDVETIAKQLAQL
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32189392, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI4505591, Length=153, Percent_Identity=30.718954248366, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI32455266, Length=153, Percent_Identity=30.718954248366, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI32455264, Length=153, Percent_Identity=30.718954248366, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1788825, Length=134, Percent_Identity=33.5820895522388, Blast_Score=67, Evalue=4e-13, Organism=Drosophila melanogaster, GI17738015, Length=141, Percent_Identity=32.6241134751773, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 16945; Mature: 16814
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPAIGQPAPDFTLPGLTLTGEEATRSEFTLSGERGHPVVLAFYPGDNTPVCTKQMCSY CCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH AAGIEVFRDLGALVWGISPQDLDSHEAFARSYSLSFPLLADDDRTVVKQYGISLPGLGLR HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCCCC RSVFLVDANGILRWKQVGLIGVTYSDVETIAKQLAQL EEEEEEECCCEEEEEECCEEEEEHHHHHHHHHHHHCC >Mature Secondary Structure ATPAIGQPAPDFTLPGLTLTGEEATRSEFTLSGERGHPVVLAFYPGDNTPVCTKQMCSY CCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH AAGIEVFRDLGALVWGISPQDLDSHEAFARSYSLSFPLLADDDRTVVKQYGISLPGLGLR HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCCCC RSVFLVDANGILRWKQVGLIGVTYSDVETIAKQLAQL EEEEEEECCCEEEEEECCEEEEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12704232 [H]