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The map label for this gene is araP [H]

Identifier: 158317897

GI number: 158317897

Start: 7488545

End: 7489489

Strand: Reverse

Name: araP [H]

Synonym: Franean1_6155

Alternate gene names: 158317897

Gene position: 7489489-7488545 (Counterclockwise)

Preceding gene: 158317903

Following gene: 158317896

Centisome position: 83.38

GC content: 68.89

Gene sequence:

>945_bases
GTGGCGCAGGGGACTAGAACCGGGCGGGACGGCTGGCGGGCGGCCGCGCTGTTGACGCCCGCCTTTGTCGGGCTGTGCGT
GTTCGTCATCGGCCCGGCGATCGTGTCGGCCTTCGTCGCCGGCACCGACAAGAACCTCACCGGCCCGGACTTCCACTGGG
TAGGGACGGCGAACCTGCGCGAGGCGCTGGCGGACCCCGATCTCGGCCAGGCCGTCCGCAACACGCTGGTCTACTGCCTG
TTGACGGTCATTCCGTCCGTTCTGTTCGGCCTGTTGCTGGCACTCGCGGCCGAACGGGTGACCCGCGGCCGGGCGGCCGT
CCGATTCGCGTTGTTCCTGCCGGCGAGTGCGAACATCGTGGCGATGGCTGTGGTCTTCCAGTACATCTTCGACAGCAGCC
CCGACGGGCTGGCCAACACTCTCGTCGGATTCGTCGGCATCGATCCGGTGAACTGGCTCGGTGACCGCGCCACCGCTCTC
CCGGTCGTCGCGCTGGTCGGTGGCTGGCGGCTGACCAGTTTCGTCTTCGTGGTCTATCTGGCCGGCCTGACCGCGATTCC
GCGCTCGGTGTACGAGGCGGCCGACGTGGACGGCGTCCGCGGGCTCGCCCGGCTGCGCCACGTCACGCTGCCGCTGCTGG
CCCCGACGACGGTGTTCCTGGGGGTGTTCGTCACCGTCCTGACGTTGCAGACGTTCGAGACGGTCGCGGTGCTCACCGAT
GGCGGGCCCCTGGACTCCAGCACGACGATCATCTACTACATCTACAAGGTCGGTTTCACGGGTTCGTTCCGGATCGGCTA
CGCATCCATGATCGCCCTGTTGCTGCTGGTCGCGGTGGTGCTCGTCGGCGCGGCGGGAGCGCTGCTGGGCCGACGCGTCC
GGATGGCCAGGCAGCTCGACGGCATGGGCGCCGAGGATCCCGTCGCCGAAGGAGGCCGGTCATGA

Upstream 100 bases:

>100_bases
GGTGCGTCATCAGGCGCTGGCCGTAAAAGACGTCGGGCGTTCATCTTTTCCCGCCCCCGGTGTGTGCGGACCGGTCGCCG
TCGGGCCAAGATGCGTAACC

Downstream 100 bases:

>100_bases
CCAGCGAGGCGGCGAGCCCGCGGCACCGCGCCGGTGCCGGCCGGGCGCCCGGTTCGAAGCGTTCGGCAGGCGCCGGGCGG
CGCGCCGTGCCGTTCTGGTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAQGTRTGRDGWRAAALLTPAFVGLCVFVIGPAIVSAFVAGTDKNLTGPDFHWVGTANLREALADPDLGQAVRNTLVYCL
LTVIPSVLFGLLLALAAERVTRGRAAVRFALFLPASANIVAMAVVFQYIFDSSPDGLANTLVGFVGIDPVNWLGDRATAL
PVVALVGGWRLTSFVFVVYLAGLTAIPRSVYEAADVDGVRGLARLRHVTLPLLAPTTVFLGVFVTVLTLQTFETVAVLTD
GGPLDSSTTIIYYIYKVGFTGSFRIGYASMIALLLLVAVVLVGAAGALLGRRVRMARQLDGMGAEDPVAEGGRS

Sequences:

>Translated_314_residues
MAQGTRTGRDGWRAAALLTPAFVGLCVFVIGPAIVSAFVAGTDKNLTGPDFHWVGTANLREALADPDLGQAVRNTLVYCL
LTVIPSVLFGLLLALAAERVTRGRAAVRFALFLPASANIVAMAVVFQYIFDSSPDGLANTLVGFVGIDPVNWLGDRATAL
PVVALVGGWRLTSFVFVVYLAGLTAIPRSVYEAADVDGVRGLARLRHVTLPLLAPTTVFLGVFVTVLTLQTFETVAVLTD
GGPLDSSTTIIYYIYKVGFTGSFRIGYASMIALLLLVAVVLVGAAGALLGRRVRMARQLDGMGAEDPVAEGGRS
>Mature_313_residues
AQGTRTGRDGWRAAALLTPAFVGLCVFVIGPAIVSAFVAGTDKNLTGPDFHWVGTANLREALADPDLGQAVRNTLVYCLL
TVIPSVLFGLLLALAAERVTRGRAAVRFALFLPASANIVAMAVVFQYIFDSSPDGLANTLVGFVGIDPVNWLGDRATALP
VVALVGGWRLTSFVFVVYLAGLTAIPRSVYEAADVDGVRGLARLRHVTLPLLAPTTVFLGVFVTVLTLQTFETVAVLTDG
GPLDSSTTIIYYIYKVGFTGSFRIGYASMIALLLLVAVVLVGAAGALLGRRVRMARQLDGMGAEDPVAEGGRS

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=295, Percent_Identity=26.7796610169492, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787570, Length=250, Percent_Identity=27.6, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790465, Length=233, Percent_Identity=28.755364806867, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33057; Mature: 32926

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50928 ABC_TM1 ; PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTRTGRDGWRAAALLTPAFVGLCVFVIGPAIVSAFVAGTDKNLTGPDFHWVGTANLR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHH
EALADPDLGQAVRNTLVYCLLTVIPSVLFGLLLALAAERVTRGRAAVRFALFLPASANIV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH
AMAVVFQYIFDSSPDGLANTLVGFVGIDPVNWLGDRATALPVVALVGGWRLTSFVFVVYL
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
AGLTAIPRSVYEAADVDGVRGLARLRHVTLPLLAPTTVFLGVFVTVLTLQTFETVAVLTD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GGPLDSSTTIIYYIYKVGFTGSFRIGYASMIALLLLVAVVLVGAAGALLGRRVRMARQLD
CCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMGAEDPVAEGGRS
CCCCCCCCCCCCCC
>Mature Secondary Structure 
AQGTRTGRDGWRAAALLTPAFVGLCVFVIGPAIVSAFVAGTDKNLTGPDFHWVGTANLR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHH
EALADPDLGQAVRNTLVYCLLTVIPSVLFGLLLALAAERVTRGRAAVRFALFLPASANIV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH
AMAVVFQYIFDSSPDGLANTLVGFVGIDPVNWLGDRATALPVVALVGGWRLTSFVFVVYL
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
AGLTAIPRSVYEAADVDGVRGLARLRHVTLPLLAPTTVFLGVFVTVLTLQTFETVAVLTD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GGPLDSSTTIIYYIYKVGFTGSFRIGYASMIALLLLVAVVLVGAAGALLGRRVRMARQLD
CCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMGAEDPVAEGGRS
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]