| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317880
Identifier: 158317880
GI number: 158317880
Start: 7468145
End: 7469059
Strand: Reverse
Name: 158317880
Synonym: Franean1_6138
Alternate gene names: NA
Gene position: 7469059-7468145 (Counterclockwise)
Preceding gene: 158317881
Following gene: 158317879
Centisome position: 83.16
GC content: 73.01
Gene sequence:
>915_bases ATGGCAGGCTGGTTGCACGGTCGGCAACGACGCCGTCCGGGCGCAGGGGGTCACATGGGCAGCGCGTGGATCACATTCAT GTCCGACTACGGAGTTGACGGCGCCTGCGTCGGCGTCTGTCACGGGATCATCGCCCGGCACGCGCCGGACGCCCGGGTCA TCGACCTGTGCCACTCGATCGCGCCGCAGGACATCGGCCAGGCGGCCGTGACGCTGGTCGGCGCGGTCGGCTACCTGCCG AGGGGAATCCACCTCGTGGTCGTCGAGCAGCTCGACGCCAGCGGCTACACCCGCGGTGTCGTCGCCCGCGCCGCGGACGG ATCGACGTTCGTCGCCCCGGACAACGGCGTCGCCTCGCTGGGCTGGGAGGCCCTGGGCGGCGTCGAGGAGGCCTACGAGA TCTCCAACCCGGACCTCTGGCTCCCGCTGCCCACCGCCGTCTTCCGCGGCCGTGACGTCTACGCGCCGGTCGTGGCGCGG CTCGCGACGGGCCTGCCTCCGGCTGACGTCGGCCCCAGGATCGACCCGGGGGAGCTGGTCGTCGTGGAGCCACGGGTGTG CCACGTGGACGACGACCACGTCCACGGCGAGGTGGTCTCGGTGGACCACTTCGGGAACCTCTCGTTGAACATGACCAGGG CCGAGCTCGAGGCCGCCGGCATCCTGCTCGGGGACAGGGTGGAGGTGCGCGCCGACGGTCGGCTGCTCACCATGCCCTTC GCGCACACCTACGGCGAGGTCCCGCCCGGCGAGATCGCGCTCTGCGAGGACGCGCTGCGCCAGGTCATGATCGCGGTGAA CTGCGGCCGGGCGGCCGAGGTGCTGCGCCTGCGGCGCGGCGACGCCGTCGTCGTCGCCCAGGTCCCCCGGGACGGCGCCC GGATCCCGGTGAGCGCGGTGCGTGGGCTCGCCTGA
Upstream 100 bases:
>100_bases CCGCTCACGTCGGCCCGCTGCGGCCGCTGTCCCGGCCCGGGCGGCCGAGTAACAGACCTGTTTCGCGCTGTGTGCTCGTC CATGCGGTTCTGGTGACCGT
Downstream 100 bases:
>100_bases CGCCGGAGCGTGGTGCGCGAGCGGGTCTGACACGACTGGCATCCCGTGTCGTGCGTCGCCCGACCGCAGTCTTGCTACTC TCCGTAGCCGTTCATGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MAGWLHGRQRRRPGAGGHMGSAWITFMSDYGVDGACVGVCHGIIARHAPDARVIDLCHSIAPQDIGQAAVTLVGAVGYLP RGIHLVVVEQLDASGYTRGVVARAADGSTFVAPDNGVASLGWEALGGVEEAYEISNPDLWLPLPTAVFRGRDVYAPVVAR LATGLPPADVGPRIDPGELVVVEPRVCHVDDDHVHGEVVSVDHFGNLSLNMTRAELEAAGILLGDRVEVRADGRLLTMPF AHTYGEVPPGEIALCEDALRQVMIAVNCGRAAEVLRLRRGDAVVVAQVPRDGARIPVSAVRGLA
Sequences:
>Translated_304_residues MAGWLHGRQRRRPGAGGHMGSAWITFMSDYGVDGACVGVCHGIIARHAPDARVIDLCHSIAPQDIGQAAVTLVGAVGYLP RGIHLVVVEQLDASGYTRGVVARAADGSTFVAPDNGVASLGWEALGGVEEAYEISNPDLWLPLPTAVFRGRDVYAPVVAR LATGLPPADVGPRIDPGELVVVEPRVCHVDDDHVHGEVVSVDHFGNLSLNMTRAELEAAGILLGDRVEVRADGRLLTMPF AHTYGEVPPGEIALCEDALRQVMIAVNCGRAAEVLRLRRGDAVVVAQVPRDGARIPVSAVRGLA >Mature_303_residues AGWLHGRQRRRPGAGGHMGSAWITFMSDYGVDGACVGVCHGIIARHAPDARVIDLCHSIAPQDIGQAAVTLVGAVGYLPR GIHLVVVEQLDASGYTRGVVARAADGSTFVAPDNGVASLGWEALGGVEEAYEISNPDLWLPLPTAVFRGRDVYAPVVARL ATGLPPADVGPRIDPGELVVVEPRVCHVDDDHVHGEVVSVDHFGNLSLNMTRAELEAAGILLGDRVEVRADGRLLTMPFA HTYGEVPPGEIALCEDALRQVMIAVNCGRAAEVLRLRRGDAVVVAQVPRDGARIPVSAVRGLA
Specific function: Unknown
COG id: COG1912
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002747 - InterPro: IPR023227 - InterPro: IPR023228 [H]
Pfam domain/function: PF01887 DUF62 [H]
EC number: NA
Molecular weight: Translated: 32076; Mature: 31945
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGWLHGRQRRRPGAGGHMGSAWITFMSDYGVDGACVGVCHGIIARHAPDARVIDLCHSI CCCCCCCHHHCCCCCCCCCCHHHEEEHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC APQDIGQAAVTLVGAVGYLPRGIHLVVVEQLDASGYTRGVVARAADGSTFVAPDNGVASL CHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCHHC GWEALGGVEEAYEISNPDLWLPLPTAVFRGRDVYAPVVARLATGLPPADVGPRIDPGELV CHHHHCCHHHHHCCCCCCEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEE VVEPRVCHVDDDHVHGEVVSVDHFGNLSLNMTRAELEAAGILLGDRVEVRADGRLLTMPF EECCEEEECCCCCCCCEEEEEECCCCEEEEEEHHHHHHHCEEECCEEEEEECCEEEEECH AHTYGEVPPGEIALCEDALRQVMIAVNCGRAAEVLRLRRGDAVVVAQVPRDGARIPVSAV HHHCCCCCCCCCHHHHHHHHHHEEHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHH RGLA CCCC >Mature Secondary Structure AGWLHGRQRRRPGAGGHMGSAWITFMSDYGVDGACVGVCHGIIARHAPDARVIDLCHSI CCCCCCHHHCCCCCCCCCCHHHEEEHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC APQDIGQAAVTLVGAVGYLPRGIHLVVVEQLDASGYTRGVVARAADGSTFVAPDNGVASL CHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCHHC GWEALGGVEEAYEISNPDLWLPLPTAVFRGRDVYAPVVARLATGLPPADVGPRIDPGELV CHHHHCCHHHHHCCCCCCEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEE VVEPRVCHVDDDHVHGEVVSVDHFGNLSLNMTRAELEAAGILLGDRVEVRADGRLLTMPF EECCEEEECCCCCCCCEEEEEECCCCEEEEEEHHHHHHHCEEECCEEEEEECCEEEEECH AHTYGEVPPGEIALCEDALRQVMIAVNCGRAAEVLRLRRGDAVVVAQVPRDGARIPVSAV HHHCCCCCCCCCHHHHHHHHHHEEHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHH RGLA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]