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The map label for this gene is sigD [H]

Identifier: 158317876

GI number: 158317876

Start: 7463391

End: 7464296

Strand: Direct

Name: sigD [H]

Synonym: Franean1_6134

Alternate gene names: 158317876

Gene position: 7463391-7464296 (Clockwise)

Preceding gene: 158317869

Following gene: 158317877

Centisome position: 83.09

GC content: 76.27

Gene sequence:

>906_bases
ATGCGCCTGCCCGCGGCACCGGCCACCCTGCCCGCGGCACCGGCGGCGCCACGGTGGGCACTCGCCCCGGCCGCGGCGCG
GTGGGCCCCTGCCACGGCGGCGCCATCCCAGTTCGACGAGCCGCTGGCCGTCGGCGTCGCCACCCTGCGCGCGGAGATCG
CCCGCGCCCGCCGGGCAGGGCTGCTCGGCGTGCTCCCGGTGCTGCTGGGCGCCGCGATGGCCACCGCCCGGACAGCGACC
GCTCACTCCATCCGGGTCGAGCCGGCCGGGCCGCGCACGGAGGACGTCCGTCCCTTCACCGACGGTCCCGCGGACGGTCT
GGGCATGCCCGACCCGCGCAGGGACGCCGATCTCGTCGGTCGGGCGATCCGCGGGGAGCGGGAGGCCTTCGGCCTCATCT
ACGACCGGTACGCCGAGTTCCTCTACCGCTACGCCTACTACCGCGTCGGCGGCAACCGCGCGGTGGCCGAGGACGTGGTC
TCCGAGACGTTCCTACGGGCGCTGACCCGGATCTCGACCTTCGAGTGGCAGGGCCGCGACATCGGGGCCTGGCTGGTCAC
CATCGCCCGCAACCACATCGTGGACCTCGCCCGCTCGGGCCGGGCCCGGCTGGAGTTTCCGACCGCCGACCTGCTCGCGG
CCGCGGACGGCCACCCGGGCGCGGGCGCCGCCGTTCCCGGCCCGGAGGACGCGGTGCTGGCCGCGCTGGACATCCGCGAG
GTGCTCGAGGCGCTGGGAACACTCGGGCCGGAGCAGCGGGAGTGCGTGACGCTGCGGTTCCTCGAGGGGCTGTCCGTCCG
GGAGACCGCGCGGGCGATGAACAAGAAGGAGGGCGCGGTGCGTGCGCTGCAGCTACGGGCCGTGCGGACGCTGGCCCGGC
ATCTGCCCACGGCGCGCACCGACTGA

Upstream 100 bases:

>100_bases
ACACGACGGCAGGTCACCAGAGCACCACGGCAGTGACCCGGCCCCGCCCCTCGCCCGCGAAGATCGCGACCGCCCGCGAC
GTCCATGTTCGGGAGCCCGC

Downstream 100 bases:

>100_bases
CCAGCCACATCGACTGACCAGCCACATCGGCTGACCATTCGCATCGGCTGACCATTCGCACCAGCTGAGACCATTCGCGT
CGACTGACTGTTCGCGCCAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRLPAAPATLPAAPAAPRWALAPAAARWAPATAAPSQFDEPLAVGVATLRAEIARARRAGLLGVLPVLLGAAMATARTAT
AHSIRVEPAGPRTEDVRPFTDGPADGLGMPDPRRDADLVGRAIRGEREAFGLIYDRYAEFLYRYAYYRVGGNRAVAEDVV
SETFLRALTRISTFEWQGRDIGAWLVTIARNHIVDLARSGRARLEFPTADLLAAADGHPGAGAAVPGPEDAVLAALDIRE
VLEALGTLGPEQRECVTLRFLEGLSVRETARAMNKKEGAVRALQLRAVRTLARHLPTARTD

Sequences:

>Translated_301_residues
MRLPAAPATLPAAPAAPRWALAPAAARWAPATAAPSQFDEPLAVGVATLRAEIARARRAGLLGVLPVLLGAAMATARTAT
AHSIRVEPAGPRTEDVRPFTDGPADGLGMPDPRRDADLVGRAIRGEREAFGLIYDRYAEFLYRYAYYRVGGNRAVAEDVV
SETFLRALTRISTFEWQGRDIGAWLVTIARNHIVDLARSGRARLEFPTADLLAAADGHPGAGAAVPGPEDAVLAALDIRE
VLEALGTLGPEQRECVTLRFLEGLSVRETARAMNKKEGAVRALQLRAVRTLARHLPTARTD
>Mature_301_residues
MRLPAAPATLPAAPAAPRWALAPAAARWAPATAAPSQFDEPLAVGVATLRAEIARARRAGLLGVLPVLLGAAMATARTAT
AHSIRVEPAGPRTEDVRPFTDGPADGLGMPDPRRDADLVGRAIRGEREAFGLIYDRYAEFLYRYAYYRVGGNRAVAEDVV
SETFLRALTRISTFEWQGRDIGAWLVTIARNHIVDLARSGRARLEFPTADLLAAADGHPGAGAAVPGPEDAVLAALDIRE
VLEALGTLGPEQRECVTLRFLEGLSVRETARAMNKKEGAVRALQLRAVRTLARHLPTARTD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 32230; Mature: 32230

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPAAPATLPAAPAAPRWALAPAAARWAPATAAPSQFDEPLAVGVATLRAEIARARRAG
CCCCCCCCCCCCCCCCCCCHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
LLGVLPVLLGAAMATARTATAHSIRVEPAGPRTEDVRPFTDGPADGLGMPDPRRDADLVG
HHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RAIRGEREAFGLIYDRYAEFLYRYAYYRVGGNRAVAEDVVSETFLRALTRISTFEWQGRD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IGAWLVTIARNHIVDLARSGRARLEFPTADLLAAADGHPGAGAAVPGPEDAVLAALDIRE
HHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
VLEALGTLGPEQRECVTLRFLEGLSVRETARAMNKKEGAVRALQLRAVRTLARHLPTART
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
D
C
>Mature Secondary Structure
MRLPAAPATLPAAPAAPRWALAPAAARWAPATAAPSQFDEPLAVGVATLRAEIARARRAG
CCCCCCCCCCCCCCCCCCCHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
LLGVLPVLLGAAMATARTATAHSIRVEPAGPRTEDVRPFTDGPADGLGMPDPRRDADLVG
HHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RAIRGEREAFGLIYDRYAEFLYRYAYYRVGGNRAVAEDVVSETFLRALTRISTFEWQGRD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IGAWLVTIARNHIVDLARSGRARLEFPTADLLAAADGHPGAGAAVPGPEDAVLAALDIRE
HHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
VLEALGTLGPEQRECVTLRFLEGLSVRETARAMNKKEGAVRALQLRAVRTLARHLPTART
HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]