| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is acm [H]
Identifier: 158317810
GI number: 158317810
Start: 7386717
End: 7387916
Strand: Direct
Name: acm [H]
Synonym: Franean1_6068
Alternate gene names: 158317810
Gene position: 7386717-7387916 (Clockwise)
Preceding gene: 158317806
Following gene: 158317811
Centisome position: 82.24
GC content: 71.83
Gene sequence:
>1200_bases ATGACACCGGTGCCCGGGCCGGGGACGTCCGAGCCCGTCCTGTTCACGGAGCCGTCCCCCGCCTGGCCCAAGGGCATCGA CATCGCATCGTGGCAGCACCCCGGGTCGGCGCCGATCGACTGGAACGCGGTCAAGGGCGCCGGCATGACCTTCGCAATCG TGAAGGCCACCGAAGGAACCAATTACACGAATCCGTTCTTCGTCGGCGACCGGGACGCGGCCGGCAAGGCGGGCCTCGCC GTCGGCGCCTACCACTACGCCCGCCCGGCGGCCCCGATCTCGACCGCCGTCGACCAGGCCCGGCACTTCCTGGCTGTGAC CGGCCTCACGCGCACAGCCGGCCACCTGGCTCCGGTCCTGGACCTGGAGACCACCGGCGGGCTCGATCCGGCGGCCCTCG CGGCCTGGACCCGGGCCTTCCTGGAGGAGATCGAGTCCCAGACCGGCCGGGCGCCCATCCTGTACACGTACCGGTCGTTC TGGACGGACAGCATGGCCGACACGAAGGAGTTCGCCCGGTACCCGTTCTGGTTCGCCATCTACAACAACGAGTCCACCCC GGGATGGCTGCCGGGCGGCTGGCCCGGCTGGGCGATGTGGCAGTACACGTCCTCTGGCGTGGTCCCCGGGATCATCGGGA GCGTCGACATGAACGTCGTGTGCTGCTCCGCCCCCGCGCTGACCGGGCTCGCCGACGGCACCCTCTCCGAGATCGACAAG CGGTACGCGGCGGCCGGGCTGCTGCAGCTCGCCCTCGGGGCGCCCACCGGAGCGGAGGTCGTCGCGGGCGGCGGCGGCCG CTGGCGCCCCTTCACGAACGGGCTGATCTACTGGTCCGTCGCGACGGGACCGCGGGTGCTGCACGGCGAGATCGCGAAGA AGTACCTGGGCCTCGGCGGGACCAACAGCTTCCTCGGACGTCCGCTCGGCGACGTCGAGTGGGCCGCCGCGCCCGGCGCC CACCAGGCGATCTTCCAGGGCGGCTGGATCTACTGGCACCCGACGACCGGGGCGCACGAGGTGCACGGCCTGATCCTGCG CCGCTACCTGGAACTGGGCGGCTCGACGTCCAGCCTGGGTCTTCCGATCACGGACGAGTACTCGGTGCCGGGCGGCCGGG AAAGTGCCTTCCAGTTCGGCAAGCTGCGCTGGACGGCCGCGACGAACGCGGTGACCCTGCTGCCCGCGGCGGCGCCCTGA
Upstream 100 bases:
>100_bases GCCCGACCCGGCGCCCGTGCCACCCGGGGCGACTCCACCTGCGCCGCCCGGGGCCACCCCTCCCGTGCCGCCTGGGGCCA TCCCGCCGGCGGCGGCGGGC
Downstream 100 bases:
>100_bases CGCCGCCCACCCCCATCCGGCCTGACGCCGCACATCCCCGACCCCCGAAACGAACGCGAGGAGTGACGAAGGCCTACGCG GGGTATCTGACGCCGAGTGC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: 1,4-beta-N-acetylmuramidase M1 [H]
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTPVPGPGTSEPVLFTEPSPAWPKGIDIASWQHPGSAPIDWNAVKGAGMTFAIVKATEGTNYTNPFFVGDRDAAGKAGLA VGAYHYARPAAPISTAVDQARHFLAVTGLTRTAGHLAPVLDLETTGGLDPAALAAWTRAFLEEIESQTGRAPILYTYRSF WTDSMADTKEFARYPFWFAIYNNESTPGWLPGGWPGWAMWQYTSSGVVPGIIGSVDMNVVCCSAPALTGLADGTLSEIDK RYAAAGLLQLALGAPTGAEVVAGGGGRWRPFTNGLIYWSVATGPRVLHGEIAKKYLGLGGTNSFLGRPLGDVEWAAAPGA HQAIFQGGWIYWHPTTGAHEVHGLILRRYLELGGSTSSLGLPITDEYSVPGGRESAFQFGKLRWTAATNAVTLLPAAAP
Sequences:
>Translated_399_residues MTPVPGPGTSEPVLFTEPSPAWPKGIDIASWQHPGSAPIDWNAVKGAGMTFAIVKATEGTNYTNPFFVGDRDAAGKAGLA VGAYHYARPAAPISTAVDQARHFLAVTGLTRTAGHLAPVLDLETTGGLDPAALAAWTRAFLEEIESQTGRAPILYTYRSF WTDSMADTKEFARYPFWFAIYNNESTPGWLPGGWPGWAMWQYTSSGVVPGIIGSVDMNVVCCSAPALTGLADGTLSEIDK RYAAAGLLQLALGAPTGAEVVAGGGGRWRPFTNGLIYWSVATGPRVLHGEIAKKYLGLGGTNSFLGRPLGDVEWAAAPGA HQAIFQGGWIYWHPTTGAHEVHGLILRRYLELGGSTSSLGLPITDEYSVPGGRESAFQFGKLRWTAATNAVTLLPAAAP >Mature_398_residues TPVPGPGTSEPVLFTEPSPAWPKGIDIASWQHPGSAPIDWNAVKGAGMTFAIVKATEGTNYTNPFFVGDRDAAGKAGLAV GAYHYARPAAPISTAVDQARHFLAVTGLTRTAGHLAPVLDLETTGGLDPAALAAWTRAFLEEIESQTGRAPILYTYRSFW TDSMADTKEFARYPFWFAIYNNESTPGWLPGGWPGWAMWQYTSSGVVPGIIGSVDMNVVCCSAPALTGLADGTLSEIDKR YAAAGLLQLALGAPTGAEVVAGGGGRWRPFTNGLIYWSVATGPRVLHGEIAKKYLGLGGTNSFLGRPLGDVEWAAAPGAH QAIFQGGWIYWHPTTGAHEVHGLILRRYLELGGSTSSLGLPITDEYSVPGGRESAFQFGKLRWTAATNAVTLLPAAAP
Specific function: This enzyme has both lysozyme (acetylmuramidase) and diacetylmuramidase activities [H]
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 25 family [H]
Homologues:
Organism=Escherichia coli, GI87082043, Length=214, Percent_Identity=33.1775700934579, Blast_Score=107, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002053 - InterPro: IPR008270 - InterPro: IPR017853 - InterPro: IPR018077 - InterPro: IPR013781 [H]
Pfam domain/function: PF01183 Glyco_hydro_25 [H]
EC number: =3.2.1.17 [H]
Molecular weight: Translated: 42200; Mature: 42069
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPVPGPGTSEPVLFTEPSPAWPKGIDIASWQHPGSAPIDWNAVKGAGMTFAIVKATEGT CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC NYTNPFFVGDRDAAGKAGLAVGAYHYARPAAPISTAVDQARHFLAVTGLTRTAGHLAPVL CCCCCEEECCCCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHEEEEECCHHHHCCCCEEE DLETTGGLDPAALAAWTRAFLEEIESQTGRAPILYTYRSFWTDSMADTKEFARYPFWFAI EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCHHHHHHHHCCCEEEEE YNNESTPGWLPGGWPGWAMWQYTSSGVVPGIIGSVDMNVVCCSAPALTGLADGTLSEIDK ECCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCEEEEECCCCCCCCCCCHHHHHHH RYAAAGLLQLALGAPTGAEVVAGGGGRWRPFTNGLIYWSVATGPRVLHGEIAKKYLGLGG HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHCCCC TNSFLGRPLGDVEWAAAPGAHQAIFQGGWIYWHPTTGAHEVHGLILRRYLELGGSTSSLG CCHHHCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC LPITDEYSVPGGRESAFQFGKLRWTAATNAVTLLPAAAP CCCCCCCCCCCCCHHHHHHCCEEEEECCCEEEEEECCCC >Mature Secondary Structure TPVPGPGTSEPVLFTEPSPAWPKGIDIASWQHPGSAPIDWNAVKGAGMTFAIVKATEGT CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC NYTNPFFVGDRDAAGKAGLAVGAYHYARPAAPISTAVDQARHFLAVTGLTRTAGHLAPVL CCCCCEEECCCCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHEEEEECCHHHHCCCCEEE DLETTGGLDPAALAAWTRAFLEEIESQTGRAPILYTYRSFWTDSMADTKEFARYPFWFAI EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCHHHHHHHHCCCEEEEE YNNESTPGWLPGGWPGWAMWQYTSSGVVPGIIGSVDMNVVCCSAPALTGLADGTLSEIDK ECCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCEEEEECCCCCCCCCCCHHHHHHH RYAAAGLLQLALGAPTGAEVVAGGGGRWRPFTNGLIYWSVATGPRVLHGEIAKKYLGLGG HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHHHCCCC TNSFLGRPLGDVEWAAAPGAHQAIFQGGWIYWHPTTGAHEVHGLILRRYLELGGSTSSLG CCHHHCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC LPITDEYSVPGGRESAFQFGKLRWTAATNAVTLLPAAAP CCCCCCCCCCCCCHHHHHHCCEEEEECCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2341041 [H]