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The map label for this gene is ydeC [H]

Identifier: 158317694

GI number: 158317694

Start: 7257759

End: 7258187

Strand: Reverse

Name: ydeC [H]

Synonym: Franean1_5952

Alternate gene names: 158317694

Gene position: 7258187-7257759 (Counterclockwise)

Preceding gene: 158317697

Following gene: 158317693

Centisome position: 80.81

GC content: 69.93

Gene sequence:

>429_bases
GTGGCGGCTGAGCTGCTGCCGCATCTGCGCCGGGTCCGCGATCACATCGATCGGCACTACCGGGAGCCGCTCGACCTCGA
CGTGCTTTCCCGGGTCGGCCGGATGTCGAAGTTCCACCTGGTCCGAAGCTTCGAGGCGGCCTACGGGGAGACCCCGATCC
GGTACGTCACGCGGCGCCGGATCGAGCGTGCGCAGGACCTGCTGCGGCACGCGAACCTCACGGTCACCGAGGTGTGCGTG
ATGGTGGGCTTCGCCAGCCTCGGGTCCTTCTCCGCCCGGTTCACCCAGCTCGTCGGGGAGAGCCCGACCGCGTACCGGAA
CCATTGGGCAGCCCGCGGCGGCCCGCACGTGCCGGGGTGCTACCTGTTCATGCGCGGCGCGATGGACCTGCGGTGCACCT
CCGACACGACCTTGGACGGCGCAATCTGA

Upstream 100 bases:

>100_bases
TAGCGTCCTGAGCCACAGGCCGCAGCCTCGTCCGCCTACTGTCTGATGAATCGCACGCGACCCTAGTATCGACGGTGTGA
CCAGGACGGGTGCCCGGCCG

Downstream 100 bases:

>100_bases
GAGAAGCGTTCCCGCGGCCGCGCGGCGTACGGTTCCCGCATGATCACAAACATCTCGCTGGTCACGATCTACTGCCTTGA
CCAGGACAAGGCCCGTGACT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAAELLPHLRRVRDHIDRHYREPLDLDVLSRVGRMSKFHLVRSFEAAYGETPIRYVTRRRIERAQDLLRHANLTVTEVCV
MVGFASLGSFSARFTQLVGESPTAYRNHWAARGGPHVPGCYLFMRGAMDLRCTSDTTLDGAI

Sequences:

>Translated_142_residues
MAAELLPHLRRVRDHIDRHYREPLDLDVLSRVGRMSKFHLVRSFEAAYGETPIRYVTRRRIERAQDLLRHANLTVTEVCV
MVGFASLGSFSARFTQLVGESPTAYRNHWAARGGPHVPGCYLFMRGAMDLRCTSDTTLDGAI
>Mature_141_residues
AAELLPHLRRVRDHIDRHYREPLDLDVLSRVGRMSKFHLVRSFEAAYGETPIRYVTRRRIERAQDLLRHANLTVTEVCVM
VGFASLGSFSARFTQLVGESPTAYRNHWAARGGPHVPGCYLFMRGAMDLRCTSDTTLDGAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 16158; Mature: 16027

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAELLPHLRRVRDHIDRHYREPLDLDVLSRVGRMSKFHLVRSFEAAYGETPIRYVTRRR
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IERAQDLLRHANLTVTEVCVMVGFASLGSFSARFTQLVGESPTAYRNHWAARGGPHVPGC
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCHH
YLFMRGAMDLRCTSDTTLDGAI
HHHHHCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
AAELLPHLRRVRDHIDRHYREPLDLDVLSRVGRMSKFHLVRSFEAAYGETPIRYVTRRR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IERAQDLLRHANLTVTEVCVMVGFASLGSFSARFTQLVGESPTAYRNHWAARGGPHVPGC
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCHH
YLFMRGAMDLRCTSDTTLDGAI
HHHHHCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]