| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is dhbE [H]
Identifier: 158317683
GI number: 158317683
Start: 7238440
End: 7240176
Strand: Reverse
Name: dhbE [H]
Synonym: Franean1_5941
Alternate gene names: 158317683
Gene position: 7240176-7238440 (Counterclockwise)
Preceding gene: 158317684
Following gene: 158317682
Centisome position: 80.61
GC content: 75.13
Gene sequence:
>1737_bases GTGACCGCCCCGGCGCCGGCGCCGGTGGACGAGGGCTGGACGCGCTGGCCGGCGGAGCTCGAGCGGCGCTACCGGGACGC GGGGTACTGGGGCGACCAGACCCTGGGTGACCTGCTGCGGGAGTGGGCGCGCCGCTTCGGGCCGGCGACGGCGCTCGTCT CGGGACCCGACCGGATCAGCTACGCCGAGCTGGACGCGGCCGTGGACGATCTCGCCGCCGGGCTGGCCACCATCGGCATC GGTCCCGGTGACCACGTGGTGGTGCACCTGCCCAACCGCGCCGAGTTCGTGACCGTGCTGTTCGCGCTGCTGCGCCGGGG CGCGATCGGCGTCCTCTCGCTGCCCGCCCACCGCAGGGTCGAGATCGAGCACCTCGCGCGGCTCTCGGGCGCCGTCGGCT ATGTGATCGCCGACCGGCACGAGGGCTTCGACTACCGGGAGCTGGCCCGGGAGGTCACCAAGGCGGTTCCCGCCGTGCGC CACGTCCTGGTGGCCGGTGAGCCCGGCCCGTTCACCGCGCTGTCGGCGCTCGCCGCGGCCGGGCGCGCCGCCCGGTCCGG CGGCGGCACACGGACCGGGGCGGCCGGCGGTGCTGTCTCCGTCACCGCGGCCGGCGCCGCTACCGACGACGCCGGTAGCG GCGGGGCGGGCCCGGATCTCGGCGCCGAGCGACCGGATCCGGGCGGTATCGCGGTGCTGCTGATCTCCGGCGGCACCACC GGCAAGCCGAAGCTGATCCCGCGCACCCATCGCGACTACGCCTACAACGCCCGCGCCAGCGCGGACGTCTGCGGGCTGAC GGCGGACGACGTGTACCTCGTCGCGCTGCCCGCCGCCCACAACTTCCCGCTGGCCTGCCCGGGGCTGCTCGGCGCGTTCG GCGTCGGGGCGACGGTCGTGATGGCTCCCTCCCCGAGTCCGGACGTCGCCTTCGACCTGGTCGCCCGCGAGCGGGTCACC GTCACCGCGCTCGTCCCCCCGCTGGCCCGGCTGTGGGTCGAGGCGGCCGGGTGGGAGGGGCCGGACACGACGAGCCTGCG GCTGGTCCAGGTGGGCGGCGCCAAGCTCGACGAGGGCCTGGCGCGGCGGATCACGCCGACCCTCGGGGCGAAGGTCCAGC AGGTCTTCGGCATGGCCGAGGGCCTGCTGAACTACACCCGCCTCGACGACCCGGACGAGCTCGTGTTCACCACGCAGGGC CGGCCGCTGGCCGCGGCCGACGAGGTCCGGGTGCTCGACGGGTCCGGTGCCGGGGTGGTCCCGGGCGAGGTGGGCGAGCT GTGGACCCGCGGGCCGTACACGATCCGCGGGTACTACCGGGCCGCCGAGCACAACTGCGCCGTCTTCGACGGCGACGGGT ACTTCCGCACCGGCGACCTCGTCCGCCAGCTCCCGACCGGCCACCTCGTGGTCGAGGGCCGGGTCAAGGACGTGATCAAC CGGGGTGGCGAGAACGTGTCCGCGGGTGAGCTGGAGGAGCACCTGCTGACCCATCCGGCGATCGGGCAGGTGGCGGTCGT CGGCATGCCGGACCCGGACGTGGGCGAGAGCGTCTGCGCGGTGGTGGTCCTCGCGCCGGGCGAGGCCCTCCGGCTCAAGC AGGTCAAGAGCTACCTGCAGGAGCGCGGCCTGGCCCGGTTCATGCTCCCCGACCGGCTCGAGGTCGTCGGCGAGTTCCCG CTCACCGCCGTCGGAAAGATCGACAAGCGGGAGCTGCGGAGCTGGCTGGACCCCTGA
Upstream 100 bases:
>100_bases TCGCCGCGATCGCACTGGAGATCGCGGCGATGTCGGACGACGAGGTCGCGGCCGAGCTGGTCGACCCGGACACGCTCCCC GCCGACTCCGGCGGTGCGTC
Downstream 100 bases:
>100_bases GCCTTCCGCTCTGACATCGACGGCGCTCGCCCCTGCCTCCCGGCGGGCGCCGTCGGAACATCGCCGACCATCGCATTTTT CTACCCGTCTCCCGCACCGC
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Dihydroxybenzoic acid-activating enzyme [H]
Number of amino acids: Translated: 578; Mature: 577
Protein sequence:
>578_residues MTAPAPAPVDEGWTRWPAELERRYRDAGYWGDQTLGDLLREWARRFGPATALVSGPDRISYAELDAAVDDLAAGLATIGI GPGDHVVVHLPNRAEFVTVLFALLRRGAIGVLSLPAHRRVEIEHLARLSGAVGYVIADRHEGFDYRELAREVTKAVPAVR HVLVAGEPGPFTALSALAAAGRAARSGGGTRTGAAGGAVSVTAAGAATDDAGSGGAGPDLGAERPDPGGIAVLLISGGTT GKPKLIPRTHRDYAYNARASADVCGLTADDVYLVALPAAHNFPLACPGLLGAFGVGATVVMAPSPSPDVAFDLVARERVT VTALVPPLARLWVEAAGWEGPDTTSLRLVQVGGAKLDEGLARRITPTLGAKVQQVFGMAEGLLNYTRLDDPDELVFTTQG RPLAAADEVRVLDGSGAGVVPGEVGELWTRGPYTIRGYYRAAEHNCAVFDGDGYFRTGDLVRQLPTGHLVVEGRVKDVIN RGGENVSAGELEEHLLTHPAIGQVAVVGMPDPDVGESVCAVVVLAPGEALRLKQVKSYLQERGLARFMLPDRLEVVGEFP LTAVGKIDKRELRSWLDP
Sequences:
>Translated_578_residues MTAPAPAPVDEGWTRWPAELERRYRDAGYWGDQTLGDLLREWARRFGPATALVSGPDRISYAELDAAVDDLAAGLATIGI GPGDHVVVHLPNRAEFVTVLFALLRRGAIGVLSLPAHRRVEIEHLARLSGAVGYVIADRHEGFDYRELAREVTKAVPAVR HVLVAGEPGPFTALSALAAAGRAARSGGGTRTGAAGGAVSVTAAGAATDDAGSGGAGPDLGAERPDPGGIAVLLISGGTT GKPKLIPRTHRDYAYNARASADVCGLTADDVYLVALPAAHNFPLACPGLLGAFGVGATVVMAPSPSPDVAFDLVARERVT VTALVPPLARLWVEAAGWEGPDTTSLRLVQVGGAKLDEGLARRITPTLGAKVQQVFGMAEGLLNYTRLDDPDELVFTTQG RPLAAADEVRVLDGSGAGVVPGEVGELWTRGPYTIRGYYRAAEHNCAVFDGDGYFRTGDLVRQLPTGHLVVEGRVKDVIN RGGENVSAGELEEHLLTHPAIGQVAVVGMPDPDVGESVCAVVVLAPGEALRLKQVKSYLQERGLARFMLPDRLEVVGEFP LTAVGKIDKRELRSWLDP >Mature_577_residues TAPAPAPVDEGWTRWPAELERRYRDAGYWGDQTLGDLLREWARRFGPATALVSGPDRISYAELDAAVDDLAAGLATIGIG PGDHVVVHLPNRAEFVTVLFALLRRGAIGVLSLPAHRRVEIEHLARLSGAVGYVIADRHEGFDYRELAREVTKAVPAVRH VLVAGEPGPFTALSALAAAGRAARSGGGTRTGAAGGAVSVTAAGAATDDAGSGGAGPDLGAERPDPGGIAVLLISGGTTG KPKLIPRTHRDYAYNARASADVCGLTADDVYLVALPAAHNFPLACPGLLGAFGVGATVVMAPSPSPDVAFDLVARERVTV TALVPPLARLWVEAAGWEGPDTTSLRLVQVGGAKLDEGLARRITPTLGAKVQQVFGMAEGLLNYTRLDDPDELVFTTQGR PLAAADEVRVLDGSGAGVVPGEVGELWTRGPYTIRGYYRAAEHNCAVFDGDGYFRTGDLVRQLPTGHLVVEGRVKDVINR GGENVSAGELEEHLLTHPAIGQVAVVGMPDPDVGESVCAVVVLAPGEALRLKQVKSYLQERGLARFMLPDRLEVVGEFPL TAVGKIDKRELRSWLDP
Specific function: Activation of the carboxylate group of 2,3-dihydroxy- benzoate (DHB), via ATP-dependent PPi exchange reactions, to the acyladenylate [H]
COG id: COG1021
COG function: function code Q; Peptide arylation enzymes
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=561, Percent_Identity=24.9554367201426, Blast_Score=143, Evalue=5e-34, Organism=Homo sapiens, GI187761345, Length=382, Percent_Identity=31.413612565445, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI187761343, Length=382, Percent_Identity=31.413612565445, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI38505220, Length=361, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI115511026, Length=531, Percent_Identity=24.2937853107345, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI13325057, Length=368, Percent_Identity=30.4347826086957, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI58082049, Length=584, Percent_Identity=23.458904109589, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI157311624, Length=585, Percent_Identity=23.2478632478632, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI157311622, Length=585, Percent_Identity=23.2478632478632, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI28416953, Length=583, Percent_Identity=23.8421955403087, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI42544132, Length=367, Percent_Identity=23.9782016348774, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI122937307, Length=239, Percent_Identity=29.2887029288703, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI8923896, Length=125, Percent_Identity=32.8, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI253970489, Length=125, Percent_Identity=32.8, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1786810, Length=568, Percent_Identity=42.7816901408451, Blast_Score=435, Evalue=1e-123, Organism=Escherichia coli, GI145693145, Length=347, Percent_Identity=32.5648414985591, Blast_Score=173, Evalue=3e-44, Organism=Escherichia coli, GI221142682, Length=553, Percent_Identity=26.9439421338156, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1788107, Length=575, Percent_Identity=26.0869565217391, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI1789201, Length=377, Percent_Identity=26.2599469496021, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1790505, Length=549, Percent_Identity=24.5901639344262, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1786529, Length=567, Percent_Identity=23.8095238095238, Blast_Score=74, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560308, Length=561, Percent_Identity=27.4509803921569, Blast_Score=145, Evalue=4e-35, Organism=Caenorhabditis elegans, GI71994703, Length=564, Percent_Identity=25.531914893617, Blast_Score=132, Evalue=5e-31, Organism=Caenorhabditis elegans, GI71994694, Length=564, Percent_Identity=25.531914893617, Blast_Score=132, Evalue=5e-31, Organism=Caenorhabditis elegans, GI71994690, Length=564, Percent_Identity=25.531914893617, Blast_Score=132, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17531443, Length=372, Percent_Identity=28.2258064516129, Blast_Score=122, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17538037, Length=534, Percent_Identity=24.3445692883895, Blast_Score=115, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17557194, Length=364, Percent_Identity=27.4725274725275, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17559526, Length=361, Percent_Identity=27.7008310249307, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71996755, Length=368, Percent_Identity=27.7173913043478, Blast_Score=99, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17558820, Length=395, Percent_Identity=25.0632911392405, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI32563687, Length=357, Percent_Identity=25.7703081232493, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71985884, Length=356, Percent_Identity=26.685393258427, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71982997, Length=546, Percent_Identity=25.4578754578755, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI71983001, Length=546, Percent_Identity=25.4578754578755, Blast_Score=79, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6319699, Length=344, Percent_Identity=29.3604651162791, Blast_Score=135, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6319264, Length=560, Percent_Identity=23.3928571428571, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24581924, Length=562, Percent_Identity=25.6227758007117, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI18859661, Length=349, Percent_Identity=28.3667621776504, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI21355181, Length=562, Percent_Identity=22.4199288256228, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI281365686, Length=331, Percent_Identity=23.5649546827795, Blast_Score=83, Evalue=4e-16, Organism=Drosophila melanogaster, GI19922652, Length=351, Percent_Identity=25.3561253561254, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI21358303, Length=264, Percent_Identity=23.1060606060606, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356441, Length=324, Percent_Identity=25.6172839506173, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI21356947, Length=521, Percent_Identity=21.4971209213052, Blast_Score=72, Evalue=8e-13, Organism=Drosophila melanogaster, GI24648253, Length=357, Percent_Identity=23.5294117647059, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24667959, Length=127, Percent_Identity=35.4330708661417, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI24667955, Length=127, Percent_Identity=35.4330708661417, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI62472339, Length=127, Percent_Identity=35.4330708661417, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24656500, Length=567, Percent_Identity=22.5749559082892, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI24648260, Length=353, Percent_Identity=22.9461756373938, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648255, Length=350, Percent_Identity=24, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR011963 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.3.2.-
Molecular weight: Translated: 60765; Mature: 60633
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPAPAPVDEGWTRWPAELERRYRDAGYWGDQTLGDLLREWARRFGPATALVSGPDRIS CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC YAELDAAVDDLAAGLATIGIGPGDHVVVHLPNRAEFVTVLFALLRRGAIGVLSLPAHRRV HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCC EIEHLARLSGAVGYVIADRHEGFDYRELAREVTKAVPAVRHVLVAGEPGPFTALSALAAA CHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHH GRAARSGGGTRTGAAGGAVSVTAAGAATDDAGSGGAGPDLGAERPDPGGIAVLLISGGTT HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC GKPKLIPRTHRDYAYNARASADVCGLTADDVYLVALPAAHNFPLACPGLLGAFGVGATVV CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEE MAPSPSPDVAFDLVARERVTVTALVPPLARLWVEAAGWEGPDTTSLRLVQVGGAKLDEGL ECCCCCCCCCCEEHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHH ARRITPTLGAKVQQVFGMAEGLLNYTRLDDPDELVFTTQGRPLAAADEVRVLDGSGAGVV HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCC PGEVGELWTRGPYTIRGYYRAAEHNCAVFDGDGYFRTGDLVRQLPTGHLVVEGRVKDVIN CCCHHHHHCCCCEEEEEEEEECCCCEEEECCCCCEECCHHHHHCCCCCEEEECHHHHHHH RGGENVSAGELEEHLLTHPAIGQVAVVGMPDPDVGESVCAVVVLAPGEALRLKQVKSYLQ CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH ERGLARFMLPDRLEVVGEFPLTAVGKIDKRELRSWLDP HCCCEEECCCHHHHHHHCCCCHHHCCCCHHHHHHHCCC >Mature Secondary Structure TAPAPAPVDEGWTRWPAELERRYRDAGYWGDQTLGDLLREWARRFGPATALVSGPDRIS CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC YAELDAAVDDLAAGLATIGIGPGDHVVVHLPNRAEFVTVLFALLRRGAIGVLSLPAHRRV HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCC EIEHLARLSGAVGYVIADRHEGFDYRELAREVTKAVPAVRHVLVAGEPGPFTALSALAAA CHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHH GRAARSGGGTRTGAAGGAVSVTAAGAATDDAGSGGAGPDLGAERPDPGGIAVLLISGGTT HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC GKPKLIPRTHRDYAYNARASADVCGLTADDVYLVALPAAHNFPLACPGLLGAFGVGATVV CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEE MAPSPSPDVAFDLVARERVTVTALVPPLARLWVEAAGWEGPDTTSLRLVQVGGAKLDEGL ECCCCCCCCCCEEHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHH ARRITPTLGAKVQQVFGMAEGLLNYTRLDDPDELVFTTQGRPLAAADEVRVLDGSGAGVV HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCC PGEVGELWTRGPYTIRGYYRAAEHNCAVFDGDGYFRTGDLVRQLPTGHLVVEGRVKDVIN CCCHHHHHCCCCEEEEEEEEECCCCEEEECCCCCEECCHHHHHCCCCCEEEECHHHHHHH RGGENVSAGELEEHLLTHPAIGQVAVVGMPDPDVGESVCAVVVLAPGEALRLKQVKSYLQ CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH ERGLARFMLPDRLEVVGEFPLTAVGKIDKRELRSWLDP HCCCEEECCCHHHHHHHCCCCHHHCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8921902; 9384377; 8224884; 12221282 [H]