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The map label for this gene is lytR [H]

Identifier: 158317644

GI number: 158317644

Start: 7169379

End: 7171256

Strand: Direct

Name: lytR [H]

Synonym: Franean1_5902

Alternate gene names: 158317644

Gene position: 7169379-7171256 (Clockwise)

Preceding gene: 158317642

Following gene: 158317645

Centisome position: 79.82

GC content: 74.49

Gene sequence:

>1878_bases
GTGACCGGCGCTGGACCGCGCGCCTCGACAGGGCCCCGACAGTGGCCTGAGTCGCCCCGCACCGGCTCCGACCCCGCAGC
GGGCGGGCGGCGCCGGCCGAGGTCACGGCCGCACGCACGCTCGCGCCAGCGCGAGGTCACCCACTCGAACCAGGACGGGT
CGGAGACCGAGCTCACCGAGCCGAGACCGAACCAGCGCCGCGGCGGCTGGGACAGGCTCCAGCGCCGGAACCCGGGCGAG
GCCGGCCCGGACGCCCGAACCCGGGAGCAGCACCTGGAGCAGAGTCAGGACCACGCCCAGGACGGCGTCCACGACGACAC
CACCGACCACGACCACAGCACCGACCACGGCCACGGCCACGGCCACGGCCACGGGTCAGGGTGGCTCCCGGGGTCGGCCG
GTCGGCGGCGTGGCGTGGCGTCGCGGCTCGCCGTCGTCGTCTCCGCCATCCTGTCGTGCCTGATCTTCGCCTTCGCCGTC
GGCGGGTTCGCCGTCTACGAGCACTTCGACCGCCAGATCAACCGGCTGCGGCTGAGCCTGGACGGCGACCGGCCCGCAAG
CCCCGTCGAGGGGACGACCAACTTCCTGCTCGTCGGCTCGGACAGCCGGGCCGGCACCGGGGGCGAGTTCCAGCGCGGCG
GCAAGGTCGCCGGCCAGCGTTCGGACACCACGATCCTCGCCCACCTCGACGCGAACGGGACGACGACCCTGGTGTCGTTC
CCGCGCGACACCCTCGTGCGCATCCCCGGGCACGGCCGGGACAAGCTGACCCAGGCGATCTCCATCGGGGGCCCGGGGCT
GCTGGTCCGGACCATCGAGAACCTCACCGACATCCGTGTCGACCACTACGTGTCGGTCGACCTCGCCGGGTTCCGCGAGA
TGACCGACGCGATCGGCGGGGTCACGGTCTGTGTGAAGGCGCTGCCGGACGGGCGGCGGACGAACCTGCGTGACGAGTGG
TCCCAGTGGCGGGGGCGGGTCGGCGAGAACCACCTGACCGGCGACCAGGCCCTCGCGTTCGTCCGCCAGCGCCACGGCCT
GCCCGACAACGACTTCGACCGCATCCGCCGGCAGCAGCAGTTCATCGGGGCGGTCTTCCGCAAGGCCACCAGCGACGGCG
TGCTGACGAGCCCGGCCCGGCTGGAGAACCTGATCAGCGCGGTGACGCGGGCGCTGACCATCGACGACGGAACGGACATC
GAGGATCTCCGGCTGCTCGCGAAGCGGATGGGGTCGATGAGCTCCGACCAGATCAGGTTCGTGACGATCCCCGTGCACGC
GCCGTCGCCGGCCGAGGGCGGGAACGCGCTCGGCGAGCTGCCCCGGTTCGGTTCCGTGCAGCTTTACGACCAGGCGCAGC
TCGACGCGTTCCTGGCGCCGCTGCGCGGCCGGGACGGCACCAGCCCGACGGCCGTCCCCGCCCCGCCGGCGTCGCCCCCG
GGCGAGGTTTCCGTCGACGTGTTCAACGCCGCGCGGGTCGGGGGGCTCGCAGCGGCCGTGCGCAGTGACCTCGCCAGTCT
CGGGTTCCGCGTCGGAACCCCGCGGGACTGGCCCGCCGGCTCGCTGCAGACCAGCGAGGTGCGGTACGGGCCCGGCGGCG
AGGCGGCGGCGCGCGCCGTGCGGGCCGTCGTGCCCGACGCCAGGCTTGTCCGCGACGACGACCTGGCCGACCGGATCTCC
CTGGTGCTGGGCGAGTCGTTCGAGAAGGTGGACGCGACCGGCGTCCCCGCGGCCGGGGCCCGAGCGGTCTCCGGTATGCG
CCCGTCGGCACCGGGCAGCGCCTCGACGGGGTCCGCGGGCCCGGCCCTGTCCGGAGCCCCCACCAGGCCGACCGCCCCGG
TGACGGCGACCGAGCTGACCACCGGCTGCACGTACTGA

Upstream 100 bases:

>100_bases
GTCGCCGTCACCGCGGACCGGCGTGCCAGCCGTCCGACGGGCAGGCCGGTCGACCGACAGGCACGCCGAGATACCCGGCA
CACCACAGAGGGGGGACGCG

Downstream 100 bases:

>100_bases
CCGACTGCACCTCCTGACCGGCGGCGCGCCGATCCGGCCGTGGGCGGCCCCTATCCGCGGGCCGCCCACGGCGCCGGCGA
ACGGCGCGAATGTGCGGGGC

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 625; Mature: 624

Protein sequence:

>625_residues
MTGAGPRASTGPRQWPESPRTGSDPAAGGRRRPRSRPHARSRQREVTHSNQDGSETELTEPRPNQRRGGWDRLQRRNPGE
AGPDARTREQHLEQSQDHAQDGVHDDTTDHDHSTDHGHGHGHGHGSGWLPGSAGRRRGVASRLAVVVSAILSCLIFAFAV
GGFAVYEHFDRQINRLRLSLDGDRPASPVEGTTNFLLVGSDSRAGTGGEFQRGGKVAGQRSDTTILAHLDANGTTTLVSF
PRDTLVRIPGHGRDKLTQAISIGGPGLLVRTIENLTDIRVDHYVSVDLAGFREMTDAIGGVTVCVKALPDGRRTNLRDEW
SQWRGRVGENHLTGDQALAFVRQRHGLPDNDFDRIRRQQQFIGAVFRKATSDGVLTSPARLENLISAVTRALTIDDGTDI
EDLRLLAKRMGSMSSDQIRFVTIPVHAPSPAEGGNALGELPRFGSVQLYDQAQLDAFLAPLRGRDGTSPTAVPAPPASPP
GEVSVDVFNAARVGGLAAAVRSDLASLGFRVGTPRDWPAGSLQTSEVRYGPGGEAAARAVRAVVPDARLVRDDDLADRIS
LVLGESFEKVDATGVPAAGARAVSGMRPSAPGSASTGSAGPALSGAPTRPTAPVTATELTTGCTY

Sequences:

>Translated_625_residues
MTGAGPRASTGPRQWPESPRTGSDPAAGGRRRPRSRPHARSRQREVTHSNQDGSETELTEPRPNQRRGGWDRLQRRNPGE
AGPDARTREQHLEQSQDHAQDGVHDDTTDHDHSTDHGHGHGHGHGSGWLPGSAGRRRGVASRLAVVVSAILSCLIFAFAV
GGFAVYEHFDRQINRLRLSLDGDRPASPVEGTTNFLLVGSDSRAGTGGEFQRGGKVAGQRSDTTILAHLDANGTTTLVSF
PRDTLVRIPGHGRDKLTQAISIGGPGLLVRTIENLTDIRVDHYVSVDLAGFREMTDAIGGVTVCVKALPDGRRTNLRDEW
SQWRGRVGENHLTGDQALAFVRQRHGLPDNDFDRIRRQQQFIGAVFRKATSDGVLTSPARLENLISAVTRALTIDDGTDI
EDLRLLAKRMGSMSSDQIRFVTIPVHAPSPAEGGNALGELPRFGSVQLYDQAQLDAFLAPLRGRDGTSPTAVPAPPASPP
GEVSVDVFNAARVGGLAAAVRSDLASLGFRVGTPRDWPAGSLQTSEVRYGPGGEAAARAVRAVVPDARLVRDDDLADRIS
LVLGESFEKVDATGVPAAGARAVSGMRPSAPGSASTGSAGPALSGAPTRPTAPVTATELTTGCTY
>Mature_624_residues
TGAGPRASTGPRQWPESPRTGSDPAAGGRRRPRSRPHARSRQREVTHSNQDGSETELTEPRPNQRRGGWDRLQRRNPGEA
GPDARTREQHLEQSQDHAQDGVHDDTTDHDHSTDHGHGHGHGHGSGWLPGSAGRRRGVASRLAVVVSAILSCLIFAFAVG
GFAVYEHFDRQINRLRLSLDGDRPASPVEGTTNFLLVGSDSRAGTGGEFQRGGKVAGQRSDTTILAHLDANGTTTLVSFP
RDTLVRIPGHGRDKLTQAISIGGPGLLVRTIENLTDIRVDHYVSVDLAGFREMTDAIGGVTVCVKALPDGRRTNLRDEWS
QWRGRVGENHLTGDQALAFVRQRHGLPDNDFDRIRRQQQFIGAVFRKATSDGVLTSPARLENLISAVTRALTIDDGTDIE
DLRLLAKRMGSMSSDQIRFVTIPVHAPSPAEGGNALGELPRFGSVQLYDQAQLDAFLAPLRGRDGTSPTAVPAPPASPPG
EVSVDVFNAARVGGLAAAVRSDLASLGFRVGTPRDWPAGSLQTSEVRYGPGGEAAARAVRAVVPDARLVRDDDLADRISL
VLGESFEKVDATGVPAAGARAVSGMRPSAPGSASTGSAGPALSGAPTRPTAPVTATELTTGCTY

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 66418; Mature: 66287

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAGPRASTGPRQWPESPRTGSDPAAGGRRRPRSRPHARSRQREVTHSNQDGSETELTE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PRPNQRRGGWDRLQRRNPGEAGPDARTREQHLEQSQDHAQDGVHDDTTDHDHSTDHGHGH
CCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GHGHGSGWLPGSAGRRRGVASRLAVVVSAILSCLIFAFAVGGFAVYEHFDRQINRLRLSL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
DGDRPASPVEGTTNFLLVGSDSRAGTGGEFQRGGKVAGQRSDTTILAHLDANGTTTLVSF
CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCEEEEEC
PRDTLVRIPGHGRDKLTQAISIGGPGLLVRTIENLTDIRVDHYVSVDLAGFREMTDAIGG
CCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHH
VTVCVKALPDGRRTNLRDEWSQWRGRVGENHLTGDQALAFVRQRHGLPDNDFDRIRRQQQ
HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
FIGAVFRKATSDGVLTSPARLENLISAVTRALTIDDGTDIEDLRLLAKRMGSMSSDQIRF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCEEE
VTIPVHAPSPAEGGNALGELPRFGSVQLYDQAQLDAFLAPLRGRDGTSPTAVPAPPASPP
EEEEECCCCCCCCCCHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GEVSVDVFNAARVGGLAAAVRSDLASLGFRVGTPRDWPAGSLQTSEVRYGPGGEAAARAV
CCEEEEEHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCEEECCCCHHHHHHH
RAVVPDARLVRDDDLADRISLVLGESFEKVDATGVPAAGARAVSGMRPSAPGSASTGSAG
HHHCCCCHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
PALSGAPTRPTAPVTATELTTGCTY
CCCCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
TGAGPRASTGPRQWPESPRTGSDPAAGGRRRPRSRPHARSRQREVTHSNQDGSETELTE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PRPNQRRGGWDRLQRRNPGEAGPDARTREQHLEQSQDHAQDGVHDDTTDHDHSTDHGHGH
CCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GHGHGSGWLPGSAGRRRGVASRLAVVVSAILSCLIFAFAVGGFAVYEHFDRQINRLRLSL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
DGDRPASPVEGTTNFLLVGSDSRAGTGGEFQRGGKVAGQRSDTTILAHLDANGTTTLVSF
CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCCCCCEEEEEECCCCCEEEEEC
PRDTLVRIPGHGRDKLTQAISIGGPGLLVRTIENLTDIRVDHYVSVDLAGFREMTDAIGG
CCCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHH
VTVCVKALPDGRRTNLRDEWSQWRGRVGENHLTGDQALAFVRQRHGLPDNDFDRIRRQQQ
HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
FIGAVFRKATSDGVLTSPARLENLISAVTRALTIDDGTDIEDLRLLAKRMGSMSSDQIRF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCEEE
VTIPVHAPSPAEGGNALGELPRFGSVQLYDQAQLDAFLAPLRGRDGTSPTAVPAPPASPP
EEEEECCCCCCCCCCHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GEVSVDVFNAARVGGLAAAVRSDLASLGFRVGTPRDWPAGSLQTSEVRYGPGGEAAARAV
CCEEEEEHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCEEECCCCHHHHHHH
RAVVPDARLVRDDDLADRISLVLGESFEKVDATGVPAAGARAVSGMRPSAPGSASTGSAG
HHHCCCCHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
PALSGAPTRPTAPVTATELTTGCTY
CCCCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]