| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is fbiC [H]
Identifier: 158317609
GI number: 158317609
Start: 7117081
End: 7119915
Strand: Reverse
Name: fbiC [H]
Synonym: Franean1_5865
Alternate gene names: 158317609
Gene position: 7119915-7117081 (Counterclockwise)
Preceding gene: 158317610
Following gene: 158317608
Centisome position: 79.27
GC content: 73.93
Gene sequence:
>2835_bases ATGACGAGTACGGCGGCGGTACCGGACGGATCACGACCCGGGCAGGCGGTGGCCCCGGAACAGGGGAGCCGGCACCGGCC GGAACCGCCGCCGTCCTCCGCCGCCATGCGCCGCGCCCTGCGCCGCGCGCGCGACGGCGTCACCCTGGACGTCACCGAGG CCGCGATCCTGCTCGCGGCGCGCGGCGAGGATCTCGCCGACCTGTGCGCCTCCGCGGCGCGCGTGCGTGACGCCGGGCTC GCCTCCCTGGGACGGCCCGGCGTCGTCACCTACTCGCCGAAGGTCTTCATCCCGCTCACCCGGCTGTGTCGGGACCGCTG CCACTACTGCACATTCGCGACCGTCCCGCACCGGCTGCCCGCGCCGTACCTGACGGTGGACGAGGTGCTCGACATCGCCC GCGCGGGGGCGGCGGCGGGGTGCGCCGAGGCGCTGTTCACCCTCGGCGACCGCCCGGAGGACCGCTGGCCGGCCGCCCGG GAGTGGCTCGACGCCCACGGCTACGACTCGACGCTGGGCTACCTGCGCGCCGTCGCGATCGCGGTGCTGGAGGAGACCGG CCTGCTGCCGCATCTCAATCCCGGCGTGCTGAGCTGGTCGGAGCTCGCGCGGCTCAAGCCGGTCGCGCCGTCGATGGGCA TGATGCTGGAGACGACCGCGACGCGGCTGTGGTCGACGCCCGGCGGCGCCCACTACGGCTCGCCCGACAAGGAGCCCGCC GTCCGGCTGCGGGTGCTGGCCGACGCCGGGCGGCTCTCCATTCCCTTCACGACCGGCCTGCTGCTCGGCATCGGCGAGAC GGCCGTCGAGCGCGCCGAGACGATCTTCGCGCTGCGTGGGCTGGCCCGCGAGTACGGGTCCGTCCAGGAGGTCATCGTCC AGAACTTCCGGGCCAAGGATGACACCGCGATGCGCGGTGAGCCGGACGTCGGCGCCGAGGAGCTCGCGGCGGCCGTGGCG GTGACCCGCCTGGTGCTCGGCCCGCGGATGCGGGTGCAGGCGCCGCCGAACCTCGTCGACACCGCCGAATGCGCGCTGCT GCTCTCCGCCGGCCTCGACGACTGGGGCGGTGTCTCGCCGGTGACCCCGGACCACGTCAACCCGGAGCGGCCCTGGCCTG ATCTGGACGTCCTGCGGGAGGTGACCGCGGCGGCGGGCTTCACGCTGCGGCCGCGGCTGACCGTCCACCCGACACACCTG GACGAGCCGTGGATCGACCCGCGGCTGTCCGGGCACGTGGCGGCGCTGGCTGGTCCGGACGGGCTGCTCGCCGAGGGCGC CCGGGCGGCGGGGCTGCCGTGGCAGGAGCCCGACGGCGGTCTGGGGAACAGCGGCCGCACCGACCTGCACACCACGGTGG ACACCGAGGGACGACACTCGGCCACCCGTTCCGACTTCGACTCCGTCTACGGCGACTGGGCCGGCCTGCGCGAGCAGGTG CGCGCCGCCGGCACCGGGGTGGACGGGATCTACGGCACGGGCACCCGGGCGGGCGCCGGTGCCGCGGAAGCCGTGGCATC CGCCGCGGGGGAGGAGACCACCGAGGACACGGCTCCGGTCGGCACGGTGGTCCCGGCCGGCACGGTGGCCGGTGGCGGCG TCCCGTCCGAGGACGGGTTCGAAGAGACCACAGCCACCACAGGAACCACCGACGGCGCGCGCGGCGCGATCACCCGGACG GAGCCGGAGGTGCTCGCGGCGCTGCGGCGGGCCAGCACCGACCCGGCCGGACTCACCGACGCCGAGGCGCTGACCCTGTT CGGAGCGACGGGCGCCGCGCTGGAAGAGCTGTGCGGCCTCGCCGACGCCCTGCGCGCCCAGACCGTGGGCGACGACGTGA CCTACGTGGTGAACCGCAACATCAACTTCACCAACGTCTGCTACACCGGCTGCCGCTTCTGTGCCTTCGCCCAGCGCCGC GCGGACGCCGACGCCTACACGCTCTCCCTGGACGAGGTCGGCTCCCGCGCGCGGGACGCGTGGTCCGTCGGCGCGACGGA GGTCTGCGTCCAGGGCGGCATCCACCCGGACCTGCCGGGCACCGCCTACTTCGAGCTCGCCCGCGAGATCAAGAAGCAGG CGCCCGGGCTGCACCTGCACGCCTTCTCGCCGATGGAGGTGGCCAACGGGGTCGCCCGCACCGGGCTGTCGACGCTGGAG TGGCTCACGGCGGCCCGGGAGGCCGGGGTGGACACCATCCCCGGCACCGCCGCGGAGATCCTCGACGACGAGGTCCGCTG GGTGCTGACCAAGGGCAAGCTGCCCACCGCCGCCTGGGTCGAGGTGGTCACCACCGCGCACCGCGTCGGCCTGCGCTCCT CGGCGACGATGATGTACGGCCACGTGGACACCCCGGCGCACTGGGTGGCCCACCTGCGCCTGCTGCGCCGCATCCAGGAG GAGACGGGCGGGTTCACCGAGTTCGTCGCGCTGCCCTTCGTGCACCACAGCTCCCCGATCTATCTAGCCGGGGTTGCCCG ACCGGGCCCCACCGTTCAGGAGAACCGGGCGGTGCACGCCATGGCCCGGATCCTGTTGCACGGAGCGATCGACAACATTC AGTGCTCGTGGGTGAAGCTCGGTACGGAGGGCTGCGTCCAGGTGCTCGCCGGTGGGGTCAACGACCTCGGAGGCACGCTG ATGGAGGAGACGATCAGCCGGATGGCGGGCTCGCAACACGGCTCACGGCGCTCCATAGCCGAGCTGGAGGAGGTCGCGCA GGCCGCGGGCCGTCCCGCTCGGCAACGGACCACTACATATGGCGTGGTCTCCGCGGAGCGTCTCGGTACCGCACGTGGTG ACGCTGCGCGCACCATGCTGACTGTCGTGACCTGA
Upstream 100 bases:
>100_bases GCACAGCCTGACCTGGACCCGCGCCGACCCGCCCTGACGGCGGCCCGGCCCCGCGGGGACATCCACCTACGATCATCCAT CGACTACCCAGGGTGAACGC
Downstream 100 bases:
>100_bases GGGCTCGTCACAGCTCGTTTATGTGGTGACGGTCTGTGACCGGGGTCTCGGTGGCCTGCTGTCGGCGCTGGTGATCGGTG TAGGTTCGGGTGAGATGTCC
Product: FO synthase
Products: NA
Alternate protein names: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [H]
Number of amino acids: Translated: 944; Mature: 943
Protein sequence:
>944_residues MTSTAAVPDGSRPGQAVAPEQGSRHRPEPPPSSAAMRRALRRARDGVTLDVTEAAILLAARGEDLADLCASAARVRDAGL ASLGRPGVVTYSPKVFIPLTRLCRDRCHYCTFATVPHRLPAPYLTVDEVLDIARAGAAAGCAEALFTLGDRPEDRWPAAR EWLDAHGYDSTLGYLRAVAIAVLEETGLLPHLNPGVLSWSELARLKPVAPSMGMMLETTATRLWSTPGGAHYGSPDKEPA VRLRVLADAGRLSIPFTTGLLLGIGETAVERAETIFALRGLAREYGSVQEVIVQNFRAKDDTAMRGEPDVGAEELAAAVA VTRLVLGPRMRVQAPPNLVDTAECALLLSAGLDDWGGVSPVTPDHVNPERPWPDLDVLREVTAAAGFTLRPRLTVHPTHL DEPWIDPRLSGHVAALAGPDGLLAEGARAAGLPWQEPDGGLGNSGRTDLHTTVDTEGRHSATRSDFDSVYGDWAGLREQV RAAGTGVDGIYGTGTRAGAGAAEAVASAAGEETTEDTAPVGTVVPAGTVAGGGVPSEDGFEETTATTGTTDGARGAITRT EPEVLAALRRASTDPAGLTDAEALTLFGATGAALEELCGLADALRAQTVGDDVTYVVNRNINFTNVCYTGCRFCAFAQRR ADADAYTLSLDEVGSRARDAWSVGATEVCVQGGIHPDLPGTAYFELAREIKKQAPGLHLHAFSPMEVANGVARTGLSTLE WLTAAREAGVDTIPGTAAEILDDEVRWVLTKGKLPTAAWVEVVTTAHRVGLRSSATMMYGHVDTPAHWVAHLRLLRRIQE ETGGFTEFVALPFVHHSSPIYLAGVARPGPTVQENRAVHAMARILLHGAIDNIQCSWVKLGTEGCVQVLAGGVNDLGGTL MEETISRMAGSQHGSRRSIAELEEVAQAAGRPARQRTTTYGVVSAERLGTARGDAARTMLTVVT
Sequences:
>Translated_944_residues MTSTAAVPDGSRPGQAVAPEQGSRHRPEPPPSSAAMRRALRRARDGVTLDVTEAAILLAARGEDLADLCASAARVRDAGL ASLGRPGVVTYSPKVFIPLTRLCRDRCHYCTFATVPHRLPAPYLTVDEVLDIARAGAAAGCAEALFTLGDRPEDRWPAAR EWLDAHGYDSTLGYLRAVAIAVLEETGLLPHLNPGVLSWSELARLKPVAPSMGMMLETTATRLWSTPGGAHYGSPDKEPA VRLRVLADAGRLSIPFTTGLLLGIGETAVERAETIFALRGLAREYGSVQEVIVQNFRAKDDTAMRGEPDVGAEELAAAVA VTRLVLGPRMRVQAPPNLVDTAECALLLSAGLDDWGGVSPVTPDHVNPERPWPDLDVLREVTAAAGFTLRPRLTVHPTHL DEPWIDPRLSGHVAALAGPDGLLAEGARAAGLPWQEPDGGLGNSGRTDLHTTVDTEGRHSATRSDFDSVYGDWAGLREQV RAAGTGVDGIYGTGTRAGAGAAEAVASAAGEETTEDTAPVGTVVPAGTVAGGGVPSEDGFEETTATTGTTDGARGAITRT EPEVLAALRRASTDPAGLTDAEALTLFGATGAALEELCGLADALRAQTVGDDVTYVVNRNINFTNVCYTGCRFCAFAQRR ADADAYTLSLDEVGSRARDAWSVGATEVCVQGGIHPDLPGTAYFELAREIKKQAPGLHLHAFSPMEVANGVARTGLSTLE WLTAAREAGVDTIPGTAAEILDDEVRWVLTKGKLPTAAWVEVVTTAHRVGLRSSATMMYGHVDTPAHWVAHLRLLRRIQE ETGGFTEFVALPFVHHSSPIYLAGVARPGPTVQENRAVHAMARILLHGAIDNIQCSWVKLGTEGCVQVLAGGVNDLGGTL MEETISRMAGSQHGSRRSIAELEEVAQAAGRPARQRTTTYGVVSAERLGTARGDAARTMLTVVT >Mature_943_residues TSTAAVPDGSRPGQAVAPEQGSRHRPEPPPSSAAMRRALRRARDGVTLDVTEAAILLAARGEDLADLCASAARVRDAGLA SLGRPGVVTYSPKVFIPLTRLCRDRCHYCTFATVPHRLPAPYLTVDEVLDIARAGAAAGCAEALFTLGDRPEDRWPAARE WLDAHGYDSTLGYLRAVAIAVLEETGLLPHLNPGVLSWSELARLKPVAPSMGMMLETTATRLWSTPGGAHYGSPDKEPAV RLRVLADAGRLSIPFTTGLLLGIGETAVERAETIFALRGLAREYGSVQEVIVQNFRAKDDTAMRGEPDVGAEELAAAVAV TRLVLGPRMRVQAPPNLVDTAECALLLSAGLDDWGGVSPVTPDHVNPERPWPDLDVLREVTAAAGFTLRPRLTVHPTHLD EPWIDPRLSGHVAALAGPDGLLAEGARAAGLPWQEPDGGLGNSGRTDLHTTVDTEGRHSATRSDFDSVYGDWAGLREQVR AAGTGVDGIYGTGTRAGAGAAEAVASAAGEETTEDTAPVGTVVPAGTVAGGGVPSEDGFEETTATTGTTDGARGAITRTE PEVLAALRRASTDPAGLTDAEALTLFGATGAALEELCGLADALRAQTVGDDVTYVVNRNINFTNVCYTGCRFCAFAQRRA DADAYTLSLDEVGSRARDAWSVGATEVCVQGGIHPDLPGTAYFELAREIKKQAPGLHLHAFSPMEVANGVARTGLSTLEW LTAAREAGVDTIPGTAAEILDDEVRWVLTKGKLPTAAWVEVVTTAHRVGLRSSATMMYGHVDTPAHWVAHLRLLRRIQEE TGGFTEFVALPFVHHSSPIYLAGVARPGPTVQENRAVHAMARILLHGAIDNIQCSWVKLGTEGCVQVLAGGVNDLGGTLM EETISRMAGSQHGSRRSIAELEEVAQAAGRPARQRTTTYGVVSAERLGTARGDAARTMLTVVT
Specific function: Catalyzes the radical-mediated transfer of the hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino- 6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (FO) [H]
COG id: COG1060
COG function: function code HR; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the radical SAM superfamily. CofH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR019940 - InterPro: IPR006638 - InterPro: IPR019939 - InterPro: IPR020050 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 99576; Mature: 99445
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTAAVPDGSRPGQAVAPEQGSRHRPEPPPSSAAMRRALRRARDGVTLDVTEAAILLAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHEEEEEE RGEDLADLCASAARVRDAGLASLGRPGVVTYSPKVFIPLTRLCRDRCHYCTFATVPHRLP CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEHHHHHHHHHHHCEEEEECCCCCCC APYLTVDEVLDIARAGAAAGCAEALFTLGDRPEDRWPAAREWLDAHGYDSTLGYLRAVAI CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH AVLEETGLLPHLNPGVLSWSELARLKPVAPSMGMMLETTATRLWSTPGGAHYGSPDKEPA HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC VRLRVLADAGRLSIPFTTGLLLGIGETAVERAETIFALRGLAREYGSVQEVIVQNFRAKD EEEEEEECCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DTAMRGEPDVGAEELAAAVAVTRLVLGPRMRVQAPPNLVDTAECALLLSAGLDDWGGVSP CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC VTPDHVNPERPWPDLDVLREVTAAAGFTLRPRLTVHPTHLDEPWIDPRLSGHVAALAGPD CCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCEEECCCCCCCCCCCCCCCCCEEEEECCC GLLAEGARAAGLPWQEPDGGLGNSGRTDLHTTVDTEGRHSATRSDFDSVYGDWAGLREQV CHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH RAAGTGVDGIYGTGTRAGAGAAEAVASAAGEETTEDTAPVGTVVPAGTVAGGGVPSEDGF HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EETTATTGTTDGARGAITRTEPEVLAALRRASTDPAGLTDAEALTLFGATGAALEELCGL CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHEEECCCHHHHHHHHHH ADALRAQTVGDDVTYVVNRNINFTNVCYTGCRFCAFAQRRADADAYTLSLDEVGSRARDA HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHH WSVGATEVCVQGGIHPDLPGTAYFELAREIKKQAPGLHLHAFSPMEVANGVARTGLSTLE HHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHH WLTAAREAGVDTIPGTAAEILDDEVRWVLTKGKLPTAAWVEVVTTAHRVGLRSSATMMYG HHHHHHHCCCCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEE HVDTPAHWVAHLRLLRRIQEETGGFTEFVALPFVHHSSPIYLAGVARPGPTVQENRAVHA CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCEEEEEECCCCCCCHHHHHHHH MARILLHGAIDNIQCSWVKLGTEGCVQVLAGGVNDLGGTLMEETISRMAGSQHGSRRSIA HHHHHHHHCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH ELEEVAQAAGRPARQRTTTYGVVSAERLGTARGDAARTMLTVVT HHHHHHHHHCCCHHHCCCHHEEEEHHHHCCCCCHHHHHEEEEEC >Mature Secondary Structure TSTAAVPDGSRPGQAVAPEQGSRHRPEPPPSSAAMRRALRRARDGVTLDVTEAAILLAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHEEEEEE RGEDLADLCASAARVRDAGLASLGRPGVVTYSPKVFIPLTRLCRDRCHYCTFATVPHRLP CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEHHHHHHHHHHHCEEEEECCCCCCC APYLTVDEVLDIARAGAAAGCAEALFTLGDRPEDRWPAAREWLDAHGYDSTLGYLRAVAI CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH AVLEETGLLPHLNPGVLSWSELARLKPVAPSMGMMLETTATRLWSTPGGAHYGSPDKEPA HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC VRLRVLADAGRLSIPFTTGLLLGIGETAVERAETIFALRGLAREYGSVQEVIVQNFRAKD EEEEEEECCCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DTAMRGEPDVGAEELAAAVAVTRLVLGPRMRVQAPPNLVDTAECALLLSAGLDDWGGVSP CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC VTPDHVNPERPWPDLDVLREVTAAAGFTLRPRLTVHPTHLDEPWIDPRLSGHVAALAGPD CCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCEEECCCCCCCCCCCCCCCCCEEEEECCC GLLAEGARAAGLPWQEPDGGLGNSGRTDLHTTVDTEGRHSATRSDFDSVYGDWAGLREQV CHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH RAAGTGVDGIYGTGTRAGAGAAEAVASAAGEETTEDTAPVGTVVPAGTVAGGGVPSEDGF HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EETTATTGTTDGARGAITRTEPEVLAALRRASTDPAGLTDAEALTLFGATGAALEELCGL CHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHEEECCCHHHHHHHHHH ADALRAQTVGDDVTYVVNRNINFTNVCYTGCRFCAFAQRRADADAYTLSLDEVGSRARDA HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHH WSVGATEVCVQGGIHPDLPGTAYFELAREIKKQAPGLHLHAFSPMEVANGVARTGLSTLE HHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHH WLTAAREAGVDTIPGTAAEILDDEVRWVLTKGKLPTAAWVEVVTTAHRVGLRSSATMMYG HHHHHHHCCCCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEE HVDTPAHWVAHLRLLRRIQEETGGFTEFVALPFVHHSSPIYLAGVARPGPTVQENRAVHA CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCEEEEEECCCCCCCHHHHHHHH MARILLHGAIDNIQCSWVKLGTEGCVQVLAGGVNDLGGTLMEETISRMAGSQHGSRRSIA HHHHHHHHCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH ELEEVAQAAGRPARQRTTTYGVVSAERLGTARGDAARTMLTVVT HHHHHHHHHCCCHHHCCCHHEEEEHHHHCCCCCHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]