| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317592
Identifier: 158317592
GI number: 158317592
Start: 7094383
End: 7096299
Strand: Reverse
Name: 158317592
Synonym: Franean1_5848
Alternate gene names: NA
Gene position: 7096299-7094383 (Counterclockwise)
Preceding gene: 158317593
Following gene: 158317586
Centisome position: 79.01
GC content: 72.56
Gene sequence:
>1917_bases GTGCCTCCCCGCGCGGTCACGGCCCGTCCGGCCGCGATGTTCCCAACCGTTCGGCGGCCAGTTCGGTCGGCCATCCTAGC CGATCAGGAGTTCCTCGCCCCGGTACATCTCGGAGAGGAAATAGTCCGGACGGCGGAGCAGTTCGAGCGCCAGCGCCAGC CGGCGGCCGAGGGCCAGCAGCTCGATGAGGTCCGCGGTCGCGCCGTGGGGCGGCAGGGACCCGTCCGCGCGGGCCGTGCC CTGGTCCAGTCCGTGGTTGAGATCGAGGGCGACGGCGAGCGCGGCGCACTGCGCGTCCGAAAGCGCGGGGAGCCCGGCGA GACCGGCGAGCGAGGGCACCGCGGGGCGTGGCGGGGCGGCGGGCGCCCGAGCCGGGAGCGTGCCGGCGGCGAGCGGCTCG TCCGGAAGCGTCGGGCTGGGGATCATCGCGCCGGATCGCGCGCTGCCCGCACCGTTCGCGAGAGCGTGCATGATCTGGGT GCTGGAGCAGACCAGTGGATTGCCGCGCAGCAGCCAGTGCAGGGCTCGGGCGAGGTCGCGCGCGTCGCGCCGCCCGTACC CGGCGGCGAACAGCGCGCACGCCTCGCGCCCTACGCCGTCGGCATCCGCGGCGCCGAGCGCGCCGATGCGTGCCGCAAGA TCCGGATCAAGGATGTCCACCCGCCTATCGTGCCGGCCGTCCTCGACCGTGAGCAAGAGCAGCTTTATTTCCGTACCCAC AGAACTTACGCTGCTCTGAGGCACACAAAATCTTCTAAGCTGTGCCAAGCTCAGCTTGTGCCTCAGCACGAGCGCGGACG CGGTCCCGACCCCCGGATCACCCTTGCCAGGTTGCGGGTCTTCGTCTCGGTCGCGGAGCTCGACTGCTCGGTCAGCCGGG CCGCGGACGAGCTCCGCCAGACCCCGAACGCCGTCCGGCAGAACCTCGACCTGCTCCAGTCGGCCTTCGCCGGCCGCAGC CTCTTCGCTCAGGACCGGCGTGGCCTTTCGGTGTTCGGGACGGAGGTGTACCGCCAGGCGCGGGAGATGATGGACCGCTG GGGTGCGTTGTCGGACGCAGGCTCGTCGACGCTGCGCATCACGTTCCTCCCGCAGCACGCGCACCTGGTCTCCGCGGTGA TGCGCCGGCTGCGCGTGACGGTCGCCGACGAACGTCCCGGCCGTGACGCCGACGGGCGTGACGGCCGGTCGGATGACCAC ATCGAGTGCACCACCAACGTGCTGGGCGAGCAGGACCGGTCGATGGTCGTGTTCGAGGAGAACGTCATCGGGTCGCTCCT GCACGGCGCGACGGACCTCGTCATCGGCCCGCCGCCCAGGCGGGTGGGTGATCCGCCCGCCCTCGACCGGCACCGGCTCT ACACATCCCGGCTCGAGGCGATGATCGACTCCGCCGAGGTCGAGGTCGAGGCCGAGCACGGCATCGAGCTTCGGGATCTG GTCCGGCGCCGGCTGCTGGTGCCGCCGTTGCCCGCACGCTCCCGTCAGATGCTCGAGCGGGAGATCGCCGAGCACATTGC GGACGATCCGGGGATCGCGGCCCGGGTCGCGCACGAGGCATATGGCACCAAGGTGCTCGTCGCGTTCGGCCAGGACGGTC ACGGCACCGTCGTCGTCCCGTCCGACATCGCGTTGCCGTTCAAGAGCGGCAGCTCGTTCGCGGGCACGCGGGCGGGCTTG TTCCGCTGGGTCCCGGTCCGCCGCGACGGCGTCGACCTGACCCAGGAGGTCTACGCGACCACGCGCGTCGATCCGGGGGA GCGGGCGCTGCGCGTCGTCCGGGAGCTGCGTGCCGTCGTGCGCGAGACGGGCCTGGACGCCGCCGCGGAGCCCCGGGAGC GTCCGGGCACCCCGGATCTCGCGCGGGGGGCCGCCGCGCGGGCCGCGGTCACAGGCGTCCGCGGGCCTTCAGCGTGA
Upstream 100 bases:
>100_bases GCCGCGCCGTTTCCGGCCGCGCCCCACCCGCCGACCGCAGTACCGTCACCCCCCGCGGACCCGAGGTAAGCGGGGCCCCG GTTCGGGTACGGCGAACGCT
Downstream 100 bases:
>100_bases GGTAGGTGTCGGTGACCAGCGCCGCGTAGTGCGCCGGTGCCACGTCCACCACCTCGACGCCGCGGCGGCGCAGCGCCTCG GTCAGCTCGCGCCGCCGCAG
Product: regulatory protein LysR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 638; Mature: 637
Protein sequence:
>638_residues MPPRAVTARPAAMFPTVRRPVRSAILADQEFLAPVHLGEEIVRTAEQFERQRQPAAEGQQLDEVRGRAVGRQGPVRAGRA LVQSVVEIEGDGERGALRVRKRGEPGETGERGHRGAWRGGGRPSRERAGGERLVRKRRAGDHRAGSRAARTVRESVHDLG AGADQWIAAQQPVQGSGEVARVAPPVPGGEQRARLAPYAVGIRGAERADACRKIRIKDVHPPIVPAVLDREQEQLYFRTH RTYAALRHTKSSKLCQAQLVPQHERGRGPDPRITLARLRVFVSVAELDCSVSRAADELRQTPNAVRQNLDLLQSAFAGRS LFAQDRRGLSVFGTEVYRQAREMMDRWGALSDAGSSTLRITFLPQHAHLVSAVMRRLRVTVADERPGRDADGRDGRSDDH IECTTNVLGEQDRSMVVFEENVIGSLLHGATDLVIGPPPRRVGDPPALDRHRLYTSRLEAMIDSAEVEVEAEHGIELRDL VRRRLLVPPLPARSRQMLEREIAEHIADDPGIAARVAHEAYGTKVLVAFGQDGHGTVVVPSDIALPFKSGSSFAGTRAGL FRWVPVRRDGVDLTQEVYATTRVDPGERALRVVRELRAVVRETGLDAAAEPRERPGTPDLARGAAARAAVTGVRGPSA
Sequences:
>Translated_638_residues MPPRAVTARPAAMFPTVRRPVRSAILADQEFLAPVHLGEEIVRTAEQFERQRQPAAEGQQLDEVRGRAVGRQGPVRAGRA LVQSVVEIEGDGERGALRVRKRGEPGETGERGHRGAWRGGGRPSRERAGGERLVRKRRAGDHRAGSRAARTVRESVHDLG AGADQWIAAQQPVQGSGEVARVAPPVPGGEQRARLAPYAVGIRGAERADACRKIRIKDVHPPIVPAVLDREQEQLYFRTH RTYAALRHTKSSKLCQAQLVPQHERGRGPDPRITLARLRVFVSVAELDCSVSRAADELRQTPNAVRQNLDLLQSAFAGRS LFAQDRRGLSVFGTEVYRQAREMMDRWGALSDAGSSTLRITFLPQHAHLVSAVMRRLRVTVADERPGRDADGRDGRSDDH IECTTNVLGEQDRSMVVFEENVIGSLLHGATDLVIGPPPRRVGDPPALDRHRLYTSRLEAMIDSAEVEVEAEHGIELRDL VRRRLLVPPLPARSRQMLEREIAEHIADDPGIAARVAHEAYGTKVLVAFGQDGHGTVVVPSDIALPFKSGSSFAGTRAGL FRWVPVRRDGVDLTQEVYATTRVDPGERALRVVRELRAVVRETGLDAAAEPRERPGTPDLARGAAARAAVTGVRGPSA >Mature_637_residues PPRAVTARPAAMFPTVRRPVRSAILADQEFLAPVHLGEEIVRTAEQFERQRQPAAEGQQLDEVRGRAVGRQGPVRAGRAL VQSVVEIEGDGERGALRVRKRGEPGETGERGHRGAWRGGGRPSRERAGGERLVRKRRAGDHRAGSRAARTVRESVHDLGA GADQWIAAQQPVQGSGEVARVAPPVPGGEQRARLAPYAVGIRGAERADACRKIRIKDVHPPIVPAVLDREQEQLYFRTHR TYAALRHTKSSKLCQAQLVPQHERGRGPDPRITLARLRVFVSVAELDCSVSRAADELRQTPNAVRQNLDLLQSAFAGRSL FAQDRRGLSVFGTEVYRQAREMMDRWGALSDAGSSTLRITFLPQHAHLVSAVMRRLRVTVADERPGRDADGRDGRSDDHI ECTTNVLGEQDRSMVVFEENVIGSLLHGATDLVIGPPPRRVGDPPALDRHRLYTSRLEAMIDSAEVEVEAEHGIELRDLV RRRLLVPPLPARSRQMLEREIAEHIADDPGIAARVAHEAYGTKVLVAFGQDGHGTVVVPSDIALPFKSGSSFAGTRAGLF RWVPVRRDGVDLTQEVYATTRVDPGERALRVVRELRAVVRETGLDAAAEPRERPGTPDLARGAAARAAVTGVRGPSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69869; Mature: 69738
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRAVTARPAAMFPTVRRPVRSAILADQEFLAPVHLGEEIVRTAEQFERQRQPAAEGQQ CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH LDEVRGRAVGRQGPVRAGRALVQSVVEIEGDGERGALRVRKRGEPGETGERGHRGAWRGG HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC GRPSRERAGGERLVRKRRAGDHRAGSRAARTVRESVHDLGAGADQWIAAQQPVQGSGEVA CCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEE RVAPPVPGGEQRARLAPYAVGIRGAERADACRKIRIKDVHPPIVPAVLDREQEQLYFRTH EECCCCCCCCCCCCCCCHHCCCCCCHHHHHHHCCEEECCCCCHHHHHHCCHHHHHHHHHH RTYAALRHTKSSKLCQAQLVPQHERGRGPDPRITLARLRVFVSVAELDCSVSRAADELRQ HHHHHHHHCCHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPNAVRQNLDLLQSAFAGRSLFAQDRRGLSVFGTEVYRQAREMMDRWGALSDAGSSTLRI CHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE TFLPQHAHLVSAVMRRLRVTVADERPGRDADGRDGRSDDHIECTTNVLGEQDRSMVVFEE EECCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCEEEEEH NVIGSLLHGATDLVIGPPPRRVGDPPALDRHRLYTSRLEAMIDSAEVEVEAEHGIELRDL HHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEHHCCCCHHHH VRRRLLVPPLPARSRQMLEREIAEHIADDPGIAARVAHEAYGTKVLVAFGQDGHGTVVVP HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEC SDIALPFKSGSSFAGTRAGLFRWVPVRRDGVDLTQEVYATTRVDPGERALRVVRELRAVV CCCEEECCCCCCCCCCHHHHEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH RETGLDAAAEPRERPGTPDLARGAAARAAVTGVRGPSA HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PPRAVTARPAAMFPTVRRPVRSAILADQEFLAPVHLGEEIVRTAEQFERQRQPAAEGQQ CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH LDEVRGRAVGRQGPVRAGRALVQSVVEIEGDGERGALRVRKRGEPGETGERGHRGAWRGG HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC GRPSRERAGGERLVRKRRAGDHRAGSRAARTVRESVHDLGAGADQWIAAQQPVQGSGEVA CCCCHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEE RVAPPVPGGEQRARLAPYAVGIRGAERADACRKIRIKDVHPPIVPAVLDREQEQLYFRTH EECCCCCCCCCCCCCCCHHCCCCCCHHHHHHHCCEEECCCCCHHHHHHCCHHHHHHHHHH RTYAALRHTKSSKLCQAQLVPQHERGRGPDPRITLARLRVFVSVAELDCSVSRAADELRQ HHHHHHHHCCHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPNAVRQNLDLLQSAFAGRSLFAQDRRGLSVFGTEVYRQAREMMDRWGALSDAGSSTLRI CHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE TFLPQHAHLVSAVMRRLRVTVADERPGRDADGRDGRSDDHIECTTNVLGEQDRSMVVFEE EECCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHCCCCCCEEEEEH NVIGSLLHGATDLVIGPPPRRVGDPPALDRHRLYTSRLEAMIDSAEVEVEAEHGIELRDL HHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEHHCCCCHHHH VRRRLLVPPLPARSRQMLEREIAEHIADDPGIAARVAHEAYGTKVLVAFGQDGHGTVVVP HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEC SDIALPFKSGSSFAGTRAGLFRWVPVRRDGVDLTQEVYATTRVDPGERALRVVRELRAVV CCCEEECCCCCCCCCCHHHHEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH RETGLDAAAEPRERPGTPDLARGAAARAAVTGVRGPSA HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA