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The map label for this gene is smpB

Identifier: 158317534

GI number: 158317534

Start: 7033533

End: 7034009

Strand: Reverse

Name: smpB

Synonym: Franean1_5790

Alternate gene names: 158317534

Gene position: 7034009-7033533 (Counterclockwise)

Preceding gene: 158317535

Following gene: 158317533

Centisome position: 78.31

GC content: 69.6

Gene sequence:

>477_bases
GTGCCGAAGGAGACCGGGCGCAAGCTGATCGCGCAGAACAAGCGCGCCCGCCACGACTACGACATCCTCGACACCTACGA
GGCCGGGCTGGTCCTCATGGGTACCGAGGTCAAGGCGCTGCGCGCCGGCCGCGCCTCGCTGGTGGACGGGTTCGCGCAGA
TCGCCGACGGTGAGATCTGGCTGCACAACGTGCACATCCCGGAGTACACCGAGGGCACGTGGACGAACCACGCCCCGCGG
CGGCGGCGCAAGCTGCTGCTGCACCGCGCCGAGATCGAGAAGCTGATCGGCAAGACCCGCGAGGGCGGCCTCACCGTCGT
CCCCCTCTCGCTCTACTTCAAGGACGGGCGGGCGAAGGTCGAAATCGCGTTGGCCCGCGGCCGCAAGAACTACGACAAGC
GCCACGCCCTCGCCGAGCGGGACGCGGCGCGTGAGATGAGCCGGATCATGGGCCGGCAGGCGAAGGGCCGTGTCTGA

Upstream 100 bases:

>100_bases
TGCGCCGGCACCTGCGGGTGTGACGGCGTCCCACGACACGGCGCCCCACAACGGGGCGGCGGACGGGAACGTTACGGACG
GGAAGCAGGGCTGAGGAGCA

Downstream 100 bases:

>100_bases
CCGACCCGCGGCGCCGGACCACGACGGCGAACAGGCGGCCCGTCCGCTCGCCACCTTCGACGCGCTGCTGACCCCCACGG
GAGCGGACCTGCTCGCCGCG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPKETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLHNVHIPEYTEGTWTNHAPR
RRRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKDGRAKVEIALARGRKNYDKRHALAERDAAREMSRIMGRQAKGRV

Sequences:

>Translated_158_residues
MPKETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLHNVHIPEYTEGTWTNHAPR
RRRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKDGRAKVEIALARGRKNYDKRHALAERDAAREMSRIMGRQAKGRV
>Mature_157_residues
PKETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLHNVHIPEYTEGTWTNHAPRR
RRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKDGRAKVEIALARGRKNYDKRHALAERDAAREMSRIMGRQAKGRV

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=146, Percent_Identity=45.2054794520548, Blast_Score=119, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_FRASN (A8L8M0)

Other databases:

- EMBL:   CP000820
- RefSeq:   YP_001510042.1
- GeneID:   5674113
- GenomeReviews:   CP000820_GR
- KEGG:   fre:Franean1_5790
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   FSP1855:FRANEAN1_5790-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17980; Mature: 17849

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIW
CCCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEECCCHHHHHCCHHHHHHHHHHHCCCEEE
LHNVHIPEYTEGTWTNHAPRRRRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKDGRAKV
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEE
EIALARGRKNYDKRHALAERDAAREMSRIMGRQAKGRV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PKETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIW
CCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEECCCHHHHHCCHHHHHHHHHHHCCCEEE
LHNVHIPEYTEGTWTNHAPRRRRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKDGRAKV
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEE
EIALARGRKNYDKRHALAERDAAREMSRIMGRQAKGRV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA