| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317481
Identifier: 158317481
GI number: 158317481
Start: 6967642
End: 6968298
Strand: Reverse
Name: 158317481
Synonym: Franean1_5733
Alternate gene names: NA
Gene position: 6968298-6967642 (Counterclockwise)
Preceding gene: 158317484
Following gene: 158317480
Centisome position: 77.58
GC content: 74.28
Gene sequence:
>657_bases GTGGGGACGTGTGCGGGGAGCGCTGAGAGCGTGCGTGTCGCCGAAAGCGCGCGCCGTGCCGAGGACGACCCGGGCGGCAG GCCCGCGGAAGTGGCGGCCGGGCCCGGTGAGGTCACGGGGAGCACACACGCGCCGGCCGCCGGCAACGGGATCCCGGGCG GTGTGCCGCCGATGGCGCGGCCACGGGCCGCCGCCGGGGCGCTCTTCTTCGACGAGGAGGGCCGGGTCCTGCTGGTTGAG CCGTCCTACAAGCCGGGGTGGGACATCCCCGGCGGCTTCATCGAACCCGGCGAGTCGCCGTACGCGGCGTGCGTCCGCGA GGTCGAGGAGGAGATCGGCATCGTCCCGCCGATCGGACCGCTGCTGGCGGTCGACTGGGCCTCCGACGAGATCGCCGGAG ACATGCTGCTGTTCGTGTTCGACGGCGGACTGCTGCCGGAGCCGTGGCGGGAGCGGATCCGGGTGGACATGGACGAGATC ATCAACTGCGCCTTCACCCCGATCTCCGAGGTCGATGACGTCCTGCCCGTCATGCACGCCCGGCGGGTCCGGGCCGCCGC CGAGCGGCGCGGGCAGGGCGACGGCGCCGGCTATCTCGAGCGCGGGTACCTGGTGCCGTCCGATCCGGCGCTCGCCGCGG ACGGCTCCGGGGAGTAG
Upstream 100 bases:
>100_bases CTCGACGTTCATGCCCGGGAAGACCGCCGCGGTGCCCCGCCAGCCGTCGGCCGTGTCCGGGGGAGGCGAGGCCCGTGCCC GAACCGGGGTTCCCGCCGAG
Downstream 100 bases:
>100_bases CCGCATCCGCGGCGACGGTCCCTCCGCGCGTGGAGATGCCGGCCGGGCCGCGGGGGGCGATGATGCCGGCACGGGACGGC GTTCGCCACGCGTGGCTGAC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 218; Mature: 217
Protein sequence:
>218_residues MGTCAGSAESVRVAESARRAEDDPGGRPAEVAAGPGEVTGSTHAPAAGNGIPGGVPPMARPRAAAGALFFDEEGRVLLVE PSYKPGWDIPGGFIEPGESPYAACVREVEEEIGIVPPIGPLLAVDWASDEIAGDMLLFVFDGGLLPEPWRERIRVDMDEI INCAFTPISEVDDVLPVMHARRVRAAAERRGQGDGAGYLERGYLVPSDPALAADGSGE
Sequences:
>Translated_218_residues MGTCAGSAESVRVAESARRAEDDPGGRPAEVAAGPGEVTGSTHAPAAGNGIPGGVPPMARPRAAAGALFFDEEGRVLLVE PSYKPGWDIPGGFIEPGESPYAACVREVEEEIGIVPPIGPLLAVDWASDEIAGDMLLFVFDGGLLPEPWRERIRVDMDEI INCAFTPISEVDDVLPVMHARRVRAAAERRGQGDGAGYLERGYLVPSDPALAADGSGE >Mature_217_residues GTCAGSAESVRVAESARRAEDDPGGRPAEVAAGPGEVTGSTHAPAAGNGIPGGVPPMARPRAAAGALFFDEEGRVLLVEP SYKPGWDIPGGFIEPGESPYAACVREVEEEIGIVPPIGPLLAVDWASDEIAGDMLLFVFDGGLLPEPWRERIRVDMDEII NCAFTPISEVDDVLPVMHARRVRAAAERRGQGDGAGYLERGYLVPSDPALAADGSGE
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22758; Mature: 22626
Theoretical pI: Translated: 4.10; Mature: 4.10
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTCAGSAESVRVAESARRAEDDPGGRPAEVAAGPGEVTGSTHAPAAGNGIPGGVPPMAR CCCCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRAAAGALFFDEEGRVLLVEPSYKPGWDIPGGFIEPGESPYAACVREVEEEIGIVPPIGP CCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC LLAVDWASDEIAGDMLLFVFDGGLLPEPWRERIRVDMDEIINCAFTPISEVDDVLPVMHA EEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHH RRVRAAAERRGQGDGAGYLERGYLVPSDPALAADGSGE HHHHHHHHHCCCCCCCCHHHCCEECCCCCCCCCCCCCC >Mature Secondary Structure GTCAGSAESVRVAESARRAEDDPGGRPAEVAAGPGEVTGSTHAPAAGNGIPGGVPPMAR CCCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC PRAAAGALFFDEEGRVLLVEPSYKPGWDIPGGFIEPGESPYAACVREVEEEIGIVPPIGP CCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC LLAVDWASDEIAGDMLLFVFDGGLLPEPWRERIRVDMDEIINCAFTPISEVDDVLPVMHA EEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHH RRVRAAAERRGQGDGAGYLERGYLVPSDPALAADGSGE HHHHHHHHHCCCCCCCCHHHCCEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA