| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is insQ [H]
Identifier: 158317439
GI number: 158317439
Start: 6909713
End: 6910903
Strand: Direct
Name: insQ [H]
Synonym: Franean1_5691
Alternate gene names: 158317439
Gene position: 6909713-6910903 (Clockwise)
Preceding gene: 158317434
Following gene: 158317441
Centisome position: 76.93
GC content: 67.25
Gene sequence:
>1191_bases GTGTCCCGGTTCCGGCTTTACCCGGCGTCCGAGCAGGCTGCTGTAATGGAGGCCCACTGCGGCCACGCACGGTTTGTGTG GAATCTTGCCGTAGAACAGCAGTCGTGGTGGACGCCGCGACGCGGGCCGGCGCCGGACTACCACGAGCAGTCCCGGCAGC TCACCGAAGCGCGACGCGAGTTCCCGTGGCTCACCGAAGGGTCGCAGACCGTTCAGCAGCAGGCGTTGCGGGATTTTGCA CAGGCCATGGACAACTACTTCCGGGGCAGTCACCGGAAGCCGACGTTTCGGAAACGTGGCCGGTCGGAGGGGTTCCGGAT CGTCGCTGTCAAATCCTCGGATATTCGCACGGTGAACCGGCGCTGGTCCGAGGTGAGGGTTCCCAAGGTCGGCTGGGTGC GTTTCCGTCGCTCGCGGACTGTCCCGAAGGCGAAGTCCTACCGGGTCACCAGGGACCGGGCTGGCCGGTGGCATGTGGCG TTCGCCGCGATCCCCGAACCGATCGACGCACCGGGTACCGGTGCGACCGTCGGTGTCGACCGTGGGGTGGCTGTGTCGGC GGCGCTGTCGACGGGCGAACTGCTGTCCTGCCCGAGACTGCCGCCCACAGAGGCGCAGCGGCTGGTCAGGCTGCAACGGC GACTTGCCCGGGCGAAGCGCGACAGCAACCGGCGCAGCCGTCTCAAGGCCCAGATCGCCCGGGTGAAGGCCCGTGAGGTG GACCGGCGGAAGGACTGGGTGGAGAAGACCAGTACCGACCTTTCCCGCCGATTCGACCTGATCCGCGTCGAAGACCTGAA GGTCAGGAACATGACCCGCTCGGCGCGGGGCACCGGGGAGGCACCGGGCAGGAACGTCCGCCAGAAAGCCGGCCTGAACC GGGCCATCCTGGCAAGCGGTTGGGGCCTGCTGGTGCAGCGCCTCGAGGACAAGGCCCCCGGCCGGGTCGAGAAGATACCC GCCGCGTACACCTCTCAGTGCTGTTCTGCCTGCAGGCATGTCGCTACCGAGTCGCGTGAGAGCCAAGCACGATTCGCCTG CGTCGCCTGCGGATATGAGGACAACGCCGATGTGAACGCGGCTAGGAACATCGCGGAGGGACACGCCGTGACTGCGCGGG GAGGCATCGGACTGCCGAAGCCCATGAACCGCGAACCTCAACTAACCGCACCTCCTCCGGTCACTGCGTGA
Upstream 100 bases:
>100_bases TCGTCATCGGGCTTGCGGCGTGGAGGCCCCGGTCTTCAGGCCGGGGAGGAGACGCCCCATGCTGGAATGCATGTTCGTAT CCTTTCAATAGAATAGCGGC
Downstream 100 bases:
>100_bases TTAGTTGGAATCTCCGCCTTTTAGGGCGGGGAGGATGTCAAACGAGATCAGGCTTCTCCTCGTAGAGCTCCTTAATGATG GACAGGTCGAACAGCTCGTC
Product: DNA (cytosine-5-)-methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSRFRLYPASEQAAVMEAHCGHARFVWNLAVEQQSWWTPRRGPAPDYHEQSRQLTEARREFPWLTEGSQTVQQQALRDFA QAMDNYFRGSHRKPTFRKRGRSEGFRIVAVKSSDIRTVNRRWSEVRVPKVGWVRFRRSRTVPKAKSYRVTRDRAGRWHVA FAAIPEPIDAPGTGATVGVDRGVAVSAALSTGELLSCPRLPPTEAQRLVRLQRRLARAKRDSNRRSRLKAQIARVKAREV DRRKDWVEKTSTDLSRRFDLIRVEDLKVRNMTRSARGTGEAPGRNVRQKAGLNRAILASGWGLLVQRLEDKAPGRVEKIP AAYTSQCCSACRHVATESRESQARFACVACGYEDNADVNAARNIAEGHAVTARGGIGLPKPMNREPQLTAPPPVTA
Sequences:
>Translated_396_residues MSRFRLYPASEQAAVMEAHCGHARFVWNLAVEQQSWWTPRRGPAPDYHEQSRQLTEARREFPWLTEGSQTVQQQALRDFA QAMDNYFRGSHRKPTFRKRGRSEGFRIVAVKSSDIRTVNRRWSEVRVPKVGWVRFRRSRTVPKAKSYRVTRDRAGRWHVA FAAIPEPIDAPGTGATVGVDRGVAVSAALSTGELLSCPRLPPTEAQRLVRLQRRLARAKRDSNRRSRLKAQIARVKAREV DRRKDWVEKTSTDLSRRFDLIRVEDLKVRNMTRSARGTGEAPGRNVRQKAGLNRAILASGWGLLVQRLEDKAPGRVEKIP AAYTSQCCSACRHVATESRESQARFACVACGYEDNADVNAARNIAEGHAVTARGGIGLPKPMNREPQLTAPPPVTA >Mature_395_residues SRFRLYPASEQAAVMEAHCGHARFVWNLAVEQQSWWTPRRGPAPDYHEQSRQLTEARREFPWLTEGSQTVQQQALRDFAQ AMDNYFRGSHRKPTFRKRGRSEGFRIVAVKSSDIRTVNRRWSEVRVPKVGWVRFRRSRTVPKAKSYRVTRDRAGRWHVAF AAIPEPIDAPGTGATVGVDRGVAVSAALSTGELLSCPRLPPTEAQRLVRLQRRLARAKRDSNRRSRLKAQIARVKAREVD RRKDWVEKTSTDLSRRFDLIRVEDLKVRNMTRSARGTGEAPGRNVRQKAGLNRAILASGWGLLVQRLEDKAPGRVEKIPA AYTSQCCSACRHVATESRESQARFACVACGYEDNADVNAARNIAEGHAVTARGGIGLPKPMNREPQLTAPPPVTA
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG0675
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transposase 35 family [H]
Homologues:
Organism=Escherichia coli, GI288549314, Length=382, Percent_Identity=36.6492146596859, Blast_Score=218, Evalue=4e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001959 - InterPro: IPR010095 - InterPro: IPR021027 [H]
Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]
EC number: NA
Molecular weight: Translated: 44618; Mature: 44487
Theoretical pI: Translated: 11.69; Mature: 11.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFRLYPASEQAAVMEAHCGHARFVWNLAVEQQSWWTPRRGPAPDYHEQSRQLTEARRE CCCEECCCCCCHHHHHHHCCCCEEEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHH FPWLTEGSQTVQQQALRDFAQAMDNYFRGSHRKPTFRKRGRSEGFRIVAVKSSDIRTVNR CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEECCCCHHHHHH RWSEVRVPKVGWVRFRRSRTVPKAKSYRVTRDRAGRWHVAFAAIPEPIDAPGTGATVGVD HHHHCCCCCHHHHHHHHHCCCCCCCCEEEHHCCCCCEEEEEEECCCCCCCCCCCCEEECC RGVAVSAALSTGELLSCPRLPPTEAQRLVRLQRRLARAKRDSNRRSRLKAQIARVKAREV CCCEEEEHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH DRRKDWVEKTSTDLSRRFDLIRVEDLKVRNMTRSARGTGEAPGRNVRQKAGLNRAILASG HHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHH WGLLVQRLEDKAPGRVEKIPAAYTSQCCSACRHVATESRESQARFACVACGYEDNADVNA HHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCHHH ARNIAEGHAVTARGGIGLPKPMNREPQLTAPPPVTA HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRFRLYPASEQAAVMEAHCGHARFVWNLAVEQQSWWTPRRGPAPDYHEQSRQLTEARRE CCEECCCCCCHHHHHHHCCCCEEEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHH FPWLTEGSQTVQQQALRDFAQAMDNYFRGSHRKPTFRKRGRSEGFRIVAVKSSDIRTVNR CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEECCCCHHHHHH RWSEVRVPKVGWVRFRRSRTVPKAKSYRVTRDRAGRWHVAFAAIPEPIDAPGTGATVGVD HHHHCCCCCHHHHHHHHHCCCCCCCCEEEHHCCCCCEEEEEEECCCCCCCCCCCCEEECC RGVAVSAALSTGELLSCPRLPPTEAQRLVRLQRRLARAKRDSNRRSRLKAQIARVKAREV CCCEEEEHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH DRRKDWVEKTSTDLSRRFDLIRVEDLKVRNMTRSARGTGEAPGRNVRQKAGLNRAILASG HHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHH WGLLVQRLEDKAPGRVEKIPAAYTSQCCSACRHVATESRESQARFACVACGYEDNADVNA HHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCHHH ARNIAEGHAVTARGGIGLPKPMNREPQLTAPPPVTA HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]