| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is livM [C]
Identifier: 158317413
GI number: 158317413
Start: 6875780
End: 6878005
Strand: Direct
Name: livM [C]
Synonym: Franean1_5664
Alternate gene names: 158317413
Gene position: 6875780-6878005 (Clockwise)
Preceding gene: 158317412
Following gene: 158317414
Centisome position: 76.55
GC content: 72.73
Gene sequence:
>2226_bases ATGACCAGTATCGATCTTGCTCTCGCCGGCATCTCCATCGGGGCCATCGCGGCCCTCTCCGGCATCGGGCTGCTTGTCAC CTACCGCACCAACGGCGTTCTCAACCTCGCGCAGGGCGGAATCGCGACCCTGGTCGCGTACGTGTTCCGCGAGATGGTCG TCGAGTGGGACCTGCCGATCTGGCTGGCCGCGGTGATCGCCCTCGGCATCCTCTCCCCCGGCATCGGGCTTCTACTCGAA CGGCTCGTGTTCCGCCCGCTCGCCCGTCGACGCGCCTCCGCCGCCGAGTCGCTGGTCGCGAGCCTCGGCGTCCTGGTCCT CACGCTCGGCATGACGGCCGGCATCTGGGGCCTGGGCTCCCGCAGCGACGCGCCGAGTATCTTCCCGAACGAGTCGGTCA CGATCTTCGGTGACACCCGCATCGGCGTCGACGCCCTGGCCGAGCTGGCCATGGTCGTCGCGTTCTGCATCGTGCTCGGG CTCATCGCGGCGAAGACGAAGTTCGGCCGCCAGATCCGGGCCGTCGTCGACGACCGCCAGCTCGCCGAGCTCTCCGGCGT GCCCGCCGACCGGGTCGCCGCGGCCGGGTGGGCGCTGGGCACCACGATGGCCGGCCTCACCGGCATCCTGCTGGCGCCCC GGTTCCAGCTCAACCCGTACGGGCTGACGCTGCTCGTCCTGGAGACGTTCGCCGTCGTCGTGGCCGCCCGGCTGTCGAGC ATGCCAGTGGCGGTGCTGACCGCGCTGGGCATCGCCGTCCTGCAGAGCGAGCTCAAGCAGTTCACCCTCGAGGGCGACGC CGGCCAGATCCTCATCGTTCTGCAGTCCAACCTGTTCATCTTCGCGCTGCTGGTGCTGCTGCTCGTGGTACCCAAGCTGC GCGAGCTGGGCAACGGCGACTCCGGCTCGACCGGGAGCTTCTCCAGCCGGGGCGCTCCCCCCGCCGGCCCGGTCAGCCGG CACGACGCCCGGCGCGACATCCTCGGCAAGCTCGGCGGCGCCGCGCTGCTGCTGGCCCCGCTGACCTTCGCCCCGGCCGA CCTGCGCTCGGCGTTCATGGTGCCCGCCCTGGCCCTGATCTTCCTCTCGCTGGTGATCCTCACCGGCTACAGCGGCCAGC TCTCCCTCGGCGTCGCCGGCTACGCGGGCCTGGGCGCCCTGCTCACCCTCAAGCTCGCCAACGGCGACCTGTTCGGCATC CCGGCGATCCCCGGCATGTGGGCGATGTTCCTGGGCGCGCTGCTGGTCGCGCCGATCGGACTGATCACCGGGTGGCCGGC GATCCGCCGGCGCGGGCTGACTCTCGCGCTGACGACCTTCGCGGTCGGCGCGGTCGTGAGCCGCTTCGTCTTCGAGCAGC CGACCTTCGCGACCGGCCTGTACGTCGACCCGCTGACGTTCTTCGGCTCCGAACTGACCGACGAGGCCTTCTACATCTTC GAGCTGGTCTGCCTGGCCATCGGCCTGCTGGTTGTGCGCAACCTGCACCACGGCCGGCTCGGCCGGGCCCTGCTCGCCGT CCGCGACCACACCGAGGGCGCCGCGGCGGTCGGGGTGGACGTCCGCAACCTCAAACTGCTCGCGTTCACCGTCTCCTCGG TCGTGGCCGGCCTCGGCGGCGGGCTGCTGACCTTCAGCTCCTCCTCGTTCTCGGCGGACGACTTCGCGCCGTTGCAGAGC CTGCTGTGGTTCACCGCCGTGATCGTCTTCGGTGCCGACAGCGCCGCCGGGGCGATCATCGCGGCGGCGTTCATCGTCAC CATCGACGTGCTGGCCCCGGCCGGCTCGTCGATCCTCGCGGTCGGCATCCTCGCCCTGGCGCTGGGCTGGATGCCCGGCG GCCTCGCGTCCGCGGTCCGGGCCGGCTTCGCGCTGGTCGCCCGCACGCTGGCCGACGAGTTCGTCCCCGCGCCGCGGCCC ACCCGCCATGCCAGCGCCCGTCTCGCCGCGGGCGGCGCCGCGGGCCACGTGCCCGGTGTCCCGGGCGCCGGCGGCGGAGC GGCTCTCGGCGAGCTGCGGATCGTGCTGCCGCCGGGAGCACCGGCACCGACCGCCTTCGGCGCGGCGCTGCTGAGCGCGG TCGCCGCACACGCCGCCCGCACCGGGCTGAGCCTGGACGCGCTGCCGAGCGCCCGCACGGCGGCGGACGACTCCACAGAC GGCCGGGAGCTGGTCGGGCACCGACCGCACCTGCCCGGATACCCGGTCGAGAGAGGCGCGTCATGA
Upstream 100 bases:
>100_bases AGCGGGCCCGGGGCGACACCATGGGCACTGAAACCATGGGCACTGAAACCATGGGCACCGACACCATGGGCACCGTCGAC ACCCTTCCCGGGGTGACCGG
Downstream 100 bases:
>100_bases GCCGCGACGATCTGCGGGCCCGTGGCCTGGTCCGCCGCTACGGCGGGCTGACAGCCGTCGAGCATGTCGACATGGACGTG CCCAGCGGCCAGGTCACCGG
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: ABC Transporter Related Protein; ABC Transporter ; Branched-Chain Amino Acid ABC Transporter Permease; ABC Transporter Permease Protein; LOW QUALITY PROTEIN ABC Transporter Permease; Branched-Chain Amino Acid ABC Transporter Permease Protein; Branched-Chain Amino Acid Transport System Permease; ABC Transporter Permease Protein ATPase; Amino Acid/Amide ABC Transporter Membrane HAAT Family; ABC Transporter Subunit; Branched Chain Amino Acid ABC Transporter Permease
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MTSIDLALAGISIGAIAALSGIGLLVTYRTNGVLNLAQGGIATLVAYVFREMVVEWDLPIWLAAVIALGILSPGIGLLLE RLVFRPLARRRASAAESLVASLGVLVLTLGMTAGIWGLGSRSDAPSIFPNESVTIFGDTRIGVDALAELAMVVAFCIVLG LIAAKTKFGRQIRAVVDDRQLAELSGVPADRVAAAGWALGTTMAGLTGILLAPRFQLNPYGLTLLVLETFAVVVAARLSS MPVAVLTALGIAVLQSELKQFTLEGDAGQILIVLQSNLFIFALLVLLLVVPKLRELGNGDSGSTGSFSSRGAPPAGPVSR HDARRDILGKLGGAALLLAPLTFAPADLRSAFMVPALALIFLSLVILTGYSGQLSLGVAGYAGLGALLTLKLANGDLFGI PAIPGMWAMFLGALLVAPIGLITGWPAIRRRGLTLALTTFAVGAVVSRFVFEQPTFATGLYVDPLTFFGSELTDEAFYIF ELVCLAIGLLVVRNLHHGRLGRALLAVRDHTEGAAAVGVDVRNLKLLAFTVSSVVAGLGGGLLTFSSSSFSADDFAPLQS LLWFTAVIVFGADSAAGAIIAAAFIVTIDVLAPAGSSILAVGILALALGWMPGGLASAVRAGFALVARTLADEFVPAPRP TRHASARLAAGGAAGHVPGVPGAGGGAALGELRIVLPPGAPAPTAFGAALLSAVAAHAARTGLSLDALPSARTAADDSTD GRELVGHRPHLPGYPVERGAS
Sequences:
>Translated_741_residues MTSIDLALAGISIGAIAALSGIGLLVTYRTNGVLNLAQGGIATLVAYVFREMVVEWDLPIWLAAVIALGILSPGIGLLLE RLVFRPLARRRASAAESLVASLGVLVLTLGMTAGIWGLGSRSDAPSIFPNESVTIFGDTRIGVDALAELAMVVAFCIVLG LIAAKTKFGRQIRAVVDDRQLAELSGVPADRVAAAGWALGTTMAGLTGILLAPRFQLNPYGLTLLVLETFAVVVAARLSS MPVAVLTALGIAVLQSELKQFTLEGDAGQILIVLQSNLFIFALLVLLLVVPKLRELGNGDSGSTGSFSSRGAPPAGPVSR HDARRDILGKLGGAALLLAPLTFAPADLRSAFMVPALALIFLSLVILTGYSGQLSLGVAGYAGLGALLTLKLANGDLFGI PAIPGMWAMFLGALLVAPIGLITGWPAIRRRGLTLALTTFAVGAVVSRFVFEQPTFATGLYVDPLTFFGSELTDEAFYIF ELVCLAIGLLVVRNLHHGRLGRALLAVRDHTEGAAAVGVDVRNLKLLAFTVSSVVAGLGGGLLTFSSSSFSADDFAPLQS LLWFTAVIVFGADSAAGAIIAAAFIVTIDVLAPAGSSILAVGILALALGWMPGGLASAVRAGFALVARTLADEFVPAPRP TRHASARLAAGGAAGHVPGVPGAGGGAALGELRIVLPPGAPAPTAFGAALLSAVAAHAARTGLSLDALPSARTAADDSTD GRELVGHRPHLPGYPVERGAS >Mature_740_residues TSIDLALAGISIGAIAALSGIGLLVTYRTNGVLNLAQGGIATLVAYVFREMVVEWDLPIWLAAVIALGILSPGIGLLLER LVFRPLARRRASAAESLVASLGVLVLTLGMTAGIWGLGSRSDAPSIFPNESVTIFGDTRIGVDALAELAMVVAFCIVLGL IAAKTKFGRQIRAVVDDRQLAELSGVPADRVAAAGWALGTTMAGLTGILLAPRFQLNPYGLTLLVLETFAVVVAARLSSM PVAVLTALGIAVLQSELKQFTLEGDAGQILIVLQSNLFIFALLVLLLVVPKLRELGNGDSGSTGSFSSRGAPPAGPVSRH DARRDILGKLGGAALLLAPLTFAPADLRSAFMVPALALIFLSLVILTGYSGQLSLGVAGYAGLGALLTLKLANGDLFGIP AIPGMWAMFLGALLVAPIGLITGWPAIRRRGLTLALTTFAVGAVVSRFVFEQPTFATGLYVDPLTFFGSELTDEAFYIFE LVCLAIGLLVVRNLHHGRLGRALLAVRDHTEGAAAVGVDVRNLKLLAFTVSSVVAGLGGGLLTFSSSSFSADDFAPLQSL LWFTAVIVFGADSAAGAIIAAAFIVTIDVLAPAGSSILAVGILALALGWMPGGLASAVRAGFALVARTLADEFVPAPRPT RHASARLAAGGAAGHVPGVPGAGGGAALGELRIVLPPGAPAPTAFGAALLSAVAAHAARTGLSLDALPSARTAADDSTDG RELVGHRPHLPGYPVERGAS
Specific function: Part Of The Binding-Protein-Dependent Transport System For Branched-Chain Amino Acids. Probably Responsible For The Translocation Of The Substrates Across The Membrane. [C]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75769; Mature: 75638
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSIDLALAGISIGAIAALSGIGLLVTYRTNGVLNLAQGGIATLVAYVFREMVVEWDLPI CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEHHCCCHHHHHHHHHHHHHHHCCCHH WLAAVIALGILSPGIGLLLERLVFRPLARRRASAAESLVASLGVLVLTLGMTAGIWGLGS HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RSDAPSIFPNESVTIFGDTRIGVDALAELAMVVAFCIVLGLIAAKTKFGRQIRAVVDDRQ CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAELSGVPADRVAAAGWALGTTMAGLTGILLAPRFQLNPYGLTLLVLETFAVVVAARLSS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHC MPVAVLTALGIAVLQSELKQFTLEGDAGQILIVLQSNLFIFALLVLLLVVPKLRELGNGD CHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC SGSTGSFSSRGAPPAGPVSRHDARRDILGKLGGAALLLAPLTFAPADLRSAFMVPALALI CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH FLSLVILTGYSGQLSLGVAGYAGLGALLTLKLANGDLFGIPAIPGMWAMFLGALLVAPIG HHHHHHHCCCCCCEEECCCCHHHHCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHH LITGWPAIRRRGLTLALTTFAVGAVVSRFVFEQPTFATGLYVDPLTFFGSELTDEAFYIF HHHCCHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHCCHHCHHHHHHH ELVCLAIGLLVVRNLHHGRLGRALLAVRDHTEGAAAVGVDVRNLKLLAFTVSSVVAGLGG HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC GLLTFSSSSFSADDFAPLQSLLWFTAVIVFGADSAAGAIIAAAFIVTIDVLAPAGSSILA CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH VGILALALGWMPGGLASAVRAGFALVARTLADEFVPAPRPTRHASARLAAGGAAGHVPGV HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCC PGAGGGAALGELRIVLPPGAPAPTAFGAALLSAVAAHAARTGLSLDALPSARTAADDSTD CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GRELVGHRPHLPGYPVERGAS CHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSIDLALAGISIGAIAALSGIGLLVTYRTNGVLNLAQGGIATLVAYVFREMVVEWDLPI CCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEHHCCCHHHHHHHHHHHHHHHCCCHH WLAAVIALGILSPGIGLLLERLVFRPLARRRASAAESLVASLGVLVLTLGMTAGIWGLGS HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RSDAPSIFPNESVTIFGDTRIGVDALAELAMVVAFCIVLGLIAAKTKFGRQIRAVVDDRQ CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAELSGVPADRVAAAGWALGTTMAGLTGILLAPRFQLNPYGLTLLVLETFAVVVAARLSS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHC MPVAVLTALGIAVLQSELKQFTLEGDAGQILIVLQSNLFIFALLVLLLVVPKLRELGNGD CHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC SGSTGSFSSRGAPPAGPVSRHDARRDILGKLGGAALLLAPLTFAPADLRSAFMVPALALI CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH FLSLVILTGYSGQLSLGVAGYAGLGALLTLKLANGDLFGIPAIPGMWAMFLGALLVAPIG HHHHHHHCCCCCCEEECCCCHHHHCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHH LITGWPAIRRRGLTLALTTFAVGAVVSRFVFEQPTFATGLYVDPLTFFGSELTDEAFYIF HHHCCHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHCCHHCHHHHHHH ELVCLAIGLLVVRNLHHGRLGRALLAVRDHTEGAAAVGVDVRNLKLLAFTVSSVVAGLGG HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC GLLTFSSSSFSADDFAPLQSLLWFTAVIVFGADSAAGAIIAAAFIVTIDVLAPAGSSILA CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH VGILALALGWMPGGLASAVRAGFALVARTLADEFVPAPRPTRHASARLAAGGAAGHVPGV HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCC PGAGGGAALGELRIVLPPGAPAPTAFGAALLSAVAAHAARTGLSLDALPSARTAADDSTD CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GRELVGHRPHLPGYPVERGAS CHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA