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The map label for this gene is ycdM [C]

Identifier: 158317394

GI number: 158317394

Start: 6858087

End: 6858941

Strand: Direct

Name: ycdM [C]

Synonym: Franean1_5645

Alternate gene names: 158317394

Gene position: 6858087-6858941 (Clockwise)

Preceding gene: 158317391

Following gene: 158317395

Centisome position: 76.35

GC content: 71.35

Gene sequence:

>855_bases
ATGAAGTTCGGACTGCACCTTGGCGGGGTCAACCCTCGGTTGTGGAACGAGGTCACGGAGGAGGCGGATCGCCTCGGGTT
CGAGTCGATCTGGGTTCCTGAGCACCTCGTCGTGCCGGTCGTCTCGGCGGGCAGCCCGCACCAGGGATCGGATCATCCGC
CGATCCCGTCCAACGTCCCGATCTTCGACGCGCTGGCGCTCCTCAGCCACCTGGCGGCGCGGACGACGCGGATTCTGCTC
GGCACGAACGTCTACAACATCGGCCTGCGGCATCCGTTCGTGACGGCGCGGGCGGCGACGACCGTGGACGTCCTCTCCGG
CGGACGGCTCGCGCTCGGGATCGGCGCCAGCTGGCTCCGCTCGGAATGGGAGGCGGTCGGCCTCGACTTCGACCGTCGCG
GCCCACGGGTGGACGAGGCCATCGAGGTGTGCCGTCGGCTGTGGAGCGAGGACGTCGTCGAGCACCACGGCGAGTTCTTC
GACTTCGGGGCGGTCGCGTTCGAGCCCAAGCCGGTCCAACGGCCGGGCCCGGCGCTGCACATCGGTGGGGACGGGCCGGC
GGCCCTCCGCCGCGCCGCGACCGTGGGAACCGGCTGGATGCCGATGAACCACAAGCTCGCTGACCTGCCCGGCTCGCTGG
CCCGGCTCGCGGAGCAGGCTGAGCGCGCGGGGCGCACCACCCCCGTCGAGGTCACGTTCAACGGCGAGGTGAGCCGTCCG
TCCGACGTCACGCCCTACGCCGAGGCCGGCGTCACCCGCCTGATCGTCCGGCCGTGGACCCGTTCCCGCGAGGCGATCGA
CGGGATGCGACGATTCGCCGACGAGGTTCTCGGCCCGCTCCAGGACACCGACTGA

Upstream 100 bases:

>100_bases
TGGCCCAAGGGGCTGTCGGCCCGTGTCACAGGTCGTTGCCTTCTTCCCCGGTATTCCCGTGTCCGGGCATCTCCGCGCTG
ACAGGGCGTAGTCTGCCCCG

Downstream 100 bases:

>100_bases
CCCGGCGACGGATGGGCGGGGCTGGCCGCCGTGCGGCGAAGTGAGTTGTCGCAGCCTCTCCGTACACCGCCGGGACAACT
TGCTTCGGACGAGATACCCG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKFGLHLGGVNPRLWNEVTEEADRLGFESIWVPEHLVVPVVSAGSPHQGSDHPPIPSNVPIFDALALLSHLAARTTRILL
GTNVYNIGLRHPFVTARAATTVDVLSGGRLALGIGASWLRSEWEAVGLDFDRRGPRVDEAIEVCRRLWSEDVVEHHGEFF
DFGAVAFEPKPVQRPGPALHIGGDGPAALRRAATVGTGWMPMNHKLADLPGSLARLAEQAERAGRTTPVEVTFNGEVSRP
SDVTPYAEAGVTRLIVRPWTRSREAIDGMRRFADEVLGPLQDTD

Sequences:

>Translated_284_residues
MKFGLHLGGVNPRLWNEVTEEADRLGFESIWVPEHLVVPVVSAGSPHQGSDHPPIPSNVPIFDALALLSHLAARTTRILL
GTNVYNIGLRHPFVTARAATTVDVLSGGRLALGIGASWLRSEWEAVGLDFDRRGPRVDEAIEVCRRLWSEDVVEHHGEFF
DFGAVAFEPKPVQRPGPALHIGGDGPAALRRAATVGTGWMPMNHKLADLPGSLARLAEQAERAGRTTPVEVTFNGEVSRP
SDVTPYAEAGVTRLIVRPWTRSREAIDGMRRFADEVLGPLQDTD
>Mature_284_residues
MKFGLHLGGVNPRLWNEVTEEADRLGFESIWVPEHLVVPVVSAGSPHQGSDHPPIPSNVPIFDALALLSHLAARTTRILL
GTNVYNIGLRHPFVTARAATTVDVLSGGRLALGIGASWLRSEWEAVGLDFDRRGPRVDEAIEVCRRLWSEDVVEHHGEFF
DFGAVAFEPKPVQRPGPALHIGGDGPAALRRAATVGTGWMPMNHKLADLPGSLARLAEQAERAGRTTPVEVTFNGEVSRP
SDVTPYAEAGVTRLIVRPWTRSREAIDGMRRFADEVLGPLQDTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 30942; Mature: 30942

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFGLHLGGVNPRLWNEVTEEADRLGFESIWVPEHLVVPVVSAGSPHQGSDHPPIPSNVP
CCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
IFDALALLSHLAARTTRILLGTNVYNIGLRHPFVTARAATTVDVLSGGRLALGIGASWLR
HHHHHHHHHHHHHHHHEEEEECCEEEECCCCCEEEHHHHHHHHHHCCCEEEEECCHHHHH
SEWEAVGLDFDRRGPRVDEAIEVCRRLWSEDVVEHHGEFFDFGAVAFEPKPVQRPGPALH
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEE
IGGDGPAALRRAATVGTGWMPMNHKLADLPGSLARLAEQAERAGRTTPVEVTFNGEVSRP
ECCCCHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
SDVTPYAEAGVTRLIVRPWTRSREAIDGMRRFADEVLGPLQDTD
CCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKFGLHLGGVNPRLWNEVTEEADRLGFESIWVPEHLVVPVVSAGSPHQGSDHPPIPSNVP
CCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
IFDALALLSHLAARTTRILLGTNVYNIGLRHPFVTARAATTVDVLSGGRLALGIGASWLR
HHHHHHHHHHHHHHHHEEEEECCEEEECCCCCEEEHHHHHHHHHHCCCEEEEECCHHHHH
SEWEAVGLDFDRRGPRVDEAIEVCRRLWSEDVVEHHGEFFDFGAVAFEPKPVQRPGPALH
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEE
IGGDGPAALRRAATVGTGWMPMNHKLADLPGSLARLAEQAERAGRTTPVEVTFNGEVSRP
ECCCCHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
SDVTPYAEAGVTRLIVRPWTRSREAIDGMRRFADEVLGPLQDTD
CCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]