| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317344
Identifier: 158317344
GI number: 158317344
Start: 6783155
End: 6784132
Strand: Reverse
Name: 158317344
Synonym: Franean1_5594
Alternate gene names: NA
Gene position: 6784132-6783155 (Counterclockwise)
Preceding gene: 158317345
Following gene: 158317340
Centisome position: 75.53
GC content: 74.44
Gene sequence:
>978_bases ATGCCGGACGTTCACGACCGAGTCGTCGCCCTGGCCCGGAGGCAGGACGACATGATCACCCGTAGCCAGGCCCGCGGGCT CGGCCTGTCCGACGGGGCGATCGCCGCCCGCCGGCGGGCCCACGGCTGGCACACCCCGATCCGTGGCACCCTCGTCATCC CTCCGGTGCGCGACCGGGTGCGTGCCCATGCTCGGGCCGCGCTCGCGGCCGCCGGTGGGACGGTCTGCCTACTGACCGCG GCCCGACTGCACGGGCTCCCCGGTCTGCCACCCCAGGGCACGACCGAGCCCGTCGATGTCGCCTTCCCGGGCGGGGCCGC GTTCCGCGGCCGGCGTGGCTGCCGGCGTCACTGCATGGAGCTGACGCCAGGCGAGACGACGGACATCGCCGGCATCAAGG CGACAACCGTGCACCGCACGCTGCAGGACATCATCCTCCGCCTCGACCGCGCGATCTCGGTACCGATGCTGGACGCTCTC CTGCACCGCGGCTGGCCGAACGGTCACGGGGCCTGTGGGGCGGCCATGGGCGGCGCGGTGCGTCCCTCGTCCGACTTCAT GGCCCTGAAGGAGGCGGTGCTGCGTCGCAACGACGCAGGTGAGGGGCCACCCGGCATCACCCGGTTGTGGAACCTGGTGG ACGGGCGCGCGGGCACGGTGCTGGAGTCGAGGGTGCGCCTGGCCCTGGTGGAGGCGGGCCTCGAACCGGAGGCGGTCCGG TGGGCGCCGGCCGGTCCGGCCACCGGCCGAGCCGGTGAGCGGGTGCATCTCGCCTGGCCGTCGGCCGGGCTGGCGGTGCA GACCTACGAGCTCGCGGCCCCGCCGGCCCGGGAGCGGCAGACCGCCCACCGGAGCCGGCTACAGGCGCAGCTGGCCGACC TCGGCATGAGCACCCTGTGGCTCACCTGGAGCGACCTGCACGATCCGGACCATCTCGTTTCGAGAATCCGGCACCGCCTC GCCAGCTCCGGCCGGTGA
Upstream 100 bases:
>100_bases CGTTCCGGCCGGCCGGTGGACAAGCTCGCACGGGATCTGGTCGTCCACAGCGGCCGCCGGGGCCGGCCGGTACGCCGCGC GGCGGCGCAGACTCGGGCAC
Downstream 100 bases:
>100_bases GGTGTTCCTGGCCAGGCCAGCCCGGGCAGGTGGCACGGTTCGCTCAGGGCTCCCCGCCGGAAAGCGTCCAGCAGGTCAGC ACCACGGTCGTCATGAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MPDVHDRVVALARRQDDMITRSQARGLGLSDGAIAARRRAHGWHTPIRGTLVIPPVRDRVRAHARAALAAAGGTVCLLTA ARLHGLPGLPPQGTTEPVDVAFPGGAAFRGRRGCRRHCMELTPGETTDIAGIKATTVHRTLQDIILRLDRAISVPMLDAL LHRGWPNGHGACGAAMGGAVRPSSDFMALKEAVLRRNDAGEGPPGITRLWNLVDGRAGTVLESRVRLALVEAGLEPEAVR WAPAGPATGRAGERVHLAWPSAGLAVQTYELAAPPARERQTAHRSRLQAQLADLGMSTLWLTWSDLHDPDHLVSRIRHRL ASSGR
Sequences:
>Translated_325_residues MPDVHDRVVALARRQDDMITRSQARGLGLSDGAIAARRRAHGWHTPIRGTLVIPPVRDRVRAHARAALAAAGGTVCLLTA ARLHGLPGLPPQGTTEPVDVAFPGGAAFRGRRGCRRHCMELTPGETTDIAGIKATTVHRTLQDIILRLDRAISVPMLDAL LHRGWPNGHGACGAAMGGAVRPSSDFMALKEAVLRRNDAGEGPPGITRLWNLVDGRAGTVLESRVRLALVEAGLEPEAVR WAPAGPATGRAGERVHLAWPSAGLAVQTYELAAPPARERQTAHRSRLQAQLADLGMSTLWLTWSDLHDPDHLVSRIRHRL ASSGR >Mature_324_residues PDVHDRVVALARRQDDMITRSQARGLGLSDGAIAARRRAHGWHTPIRGTLVIPPVRDRVRAHARAALAAAGGTVCLLTAA RLHGLPGLPPQGTTEPVDVAFPGGAAFRGRRGCRRHCMELTPGETTDIAGIKATTVHRTLQDIILRLDRAISVPMLDALL HRGWPNGHGACGAAMGGAVRPSSDFMALKEAVLRRNDAGEGPPGITRLWNLVDGRAGTVLESRVRLALVEAGLEPEAVRW APAGPATGRAGERVHLAWPSAGLAVQTYELAAPPARERQTAHRSRLQAQLADLGMSTLWLTWSDLHDPDHLVSRIRHRLA SSGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34868; Mature: 34737
Theoretical pI: Translated: 11.67; Mature: 11.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDVHDRVVALARRQDDMITRSQARGLGLSDGAIAARRRAHGWHTPIRGTLVIPPVRDRV CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCHHHHH RAHARAALAAAGGTVCLLTAARLHGLPGLPPQGTTEPVDVAFPGGAAFRGRRGCRRHCME HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHCHHHHHHHHHC LTPGETTDIAGIKATTVHRTLQDIILRLDRAISVPMLDALLHRGWPNGHGACGAAMGGAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHCCCC RPSSDFMALKEAVLRRNDAGEGPPGITRLWNLVDGRAGTVLESRVRLALVEAGLEPEAVR CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEE WAPAGPATGRAGERVHLAWPSAGLAVQTYELAAPPARERQTAHRSRLQAQLADLGMSTLW ECCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE LTWSDLHDPDHLVSRIRHRLASSGR EEECCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure PDVHDRVVALARRQDDMITRSQARGLGLSDGAIAARRRAHGWHTPIRGTLVIPPVRDRV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCHHHHH RAHARAALAAAGGTVCLLTAARLHGLPGLPPQGTTEPVDVAFPGGAAFRGRRGCRRHCME HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHCHHHHHHHHHC LTPGETTDIAGIKATTVHRTLQDIILRLDRAISVPMLDALLHRGWPNGHGACGAAMGGAV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHCCCC RPSSDFMALKEAVLRRNDAGEGPPGITRLWNLVDGRAGTVLESRVRLALVEAGLEPEAVR CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEE WAPAGPATGRAGERVHLAWPSAGLAVQTYELAAPPARERQTAHRSRLQAQLADLGMSTLW ECCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE LTWSDLHDPDHLVSRIRHRLASSGR EEECCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA