| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317330
Identifier: 158317330
GI number: 158317330
Start: 6760126
End: 6761490
Strand: Reverse
Name: 158317330
Synonym: Franean1_5580
Alternate gene names: NA
Gene position: 6761490-6760126 (Counterclockwise)
Preceding gene: 158317331
Following gene: 158317329
Centisome position: 75.28
GC content: 73.11
Gene sequence:
>1365_bases GTGCGCATCTCACCGGTTACGGAGGCGGCAGGCGGATTGTCCGCCGCCGTCCGCCGCCGGCGCACACGGCGCCGGCCTCA CCTGGCGAGCCGTCAACGGACGCGCCTGTTCACGCGCCTGCGGACTCGCCTCCGGACCCTGCCGATCGTGCTCGCGGCGC TGCTCGTGGCCGCCGGGTGTGTCTCGTGCGTGTCCTGGAACGACTCGTCCGATGCCACGGACTCGCACGGTTCGGGTGCC TCGTGCCCGCCCGTGCCGGGGGTCACGGCGGACGAGGTCCGGCTCGGCCTGCTGTTCCCGAACACCGGCAACGCGGCGTC GTTGTTCGACCCGTTCCGGGCCGGGGTCGACGCCCGGCTCGGGGTGGCGAACGCGGCCGGTGGGGTCCAGGGGCGGAGCA TCGAGTACTCGTGGCGCGACGACGAATCGCAGCCCAGCGTCAACGAGACCGCGGCCCGCATGCTCGTCGACCAGCACCAG GTGTTCGGGATCGTCGAGTCCACCACGGCCGCGGCCGGCTCGGCGGAGTTCCTGCACAGCCGCGGCATCCCGGTCACCGG AACGTCGCTGGAGGCGTCCTGGACCACCTTCGACAACATGTTCAGCTACTCGAACATGATCGCGGACGGTGCCTCGGTGT CGACCTGGGGTGACTTCGTCGCCGAGCGCGGGGGGACGACGGCGCTGATCGCCGCGTCGAGCTTCTCGGCCGCCTCGGGC GCCTTCGGCGAGGAGCTGGCCGCCAGCCTGGAGGCGGCCGGGGTGCGGGTCGTCGGCACCCTCGACGCGACCGGGCCGAT CGACTTCGCCGACGTCGGCGCGCAGGTGCGTGACAGCGGCGCCGACACGCTCGTCGGGGCGGTCACGGGGGCCGCGTTCG GCCAGGTCGTGCTGGGCGCCCGGGGGGCCGGGGCCAACCTGCGGGTGATCCTCTCGCCGTCCGGGTACGACCAGAGCCTG CTGGACGTCTTCGGCCGGGTGCTGAGCGGCGTCTACATCTTCGTCGACTACCAGCCGTTCGAGCTCGACACGCCGGGCCA CCGCGCCTTCCTCGACGCGATGACGCGGTACGCCCCGTACCTGCAGTCGCCGAACAGGCAGGCCGCGCTCTCCGGCTGGA TCTCGACCGACATGTTCCTGCGCGGGCTGGCCGAGGCCGGCCGGTGCCCGACCCGGGAGCGCTTCATCGAGGGGCTGCGC GCCGTCCGCGACTACGCCGCCGACGGGCTGCTGCCGGCGCCCATCGACTTCACGGCCTCCTTCGGTCAGCTCGGCCGGTG CTACACCTTCCTTCAGGTGGCTCCCGACGCGAGCCGCTTCGACGTGCTCCGGCCGGCACCGCGCTGCGGCCGGCTCGAGC ACTGA
Upstream 100 bases:
>100_bases TACTTGCCAAAAAGTTGCGTCCAGGCTGACCCAACGGTCGAATTTCACAGAAACAACGGATAGCTGTGGTGCGGTGACCA TCCTGGGTCACTGTGGTGCT
Downstream 100 bases:
>100_bases CCCGCGGCCCGGCCGGCGGCACCGGCGTCAGCATCCCGACGGCCGGCCTTCTGACGGCCGGCCTTCTGACGACCGGCCGT TGTGTAAAGAGTCCGTCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MRISPVTEAAGGLSAAVRRRRTRRRPHLASRQRTRLFTRLRTRLRTLPIVLAALLVAAGCVSCVSWNDSSDATDSHGSGA SCPPVPGVTADEVRLGLLFPNTGNAASLFDPFRAGVDARLGVANAAGGVQGRSIEYSWRDDESQPSVNETAARMLVDQHQ VFGIVESTTAAAGSAEFLHSRGIPVTGTSLEASWTTFDNMFSYSNMIADGASVSTWGDFVAERGGTTALIAASSFSAASG AFGEELAASLEAAGVRVVGTLDATGPIDFADVGAQVRDSGADTLVGAVTGAAFGQVVLGARGAGANLRVILSPSGYDQSL LDVFGRVLSGVYIFVDYQPFELDTPGHRAFLDAMTRYAPYLQSPNRQAALSGWISTDMFLRGLAEAGRCPTRERFIEGLR AVRDYAADGLLPAPIDFTASFGQLGRCYTFLQVAPDASRFDVLRPAPRCGRLEH
Sequences:
>Translated_454_residues MRISPVTEAAGGLSAAVRRRRTRRRPHLASRQRTRLFTRLRTRLRTLPIVLAALLVAAGCVSCVSWNDSSDATDSHGSGA SCPPVPGVTADEVRLGLLFPNTGNAASLFDPFRAGVDARLGVANAAGGVQGRSIEYSWRDDESQPSVNETAARMLVDQHQ VFGIVESTTAAAGSAEFLHSRGIPVTGTSLEASWTTFDNMFSYSNMIADGASVSTWGDFVAERGGTTALIAASSFSAASG AFGEELAASLEAAGVRVVGTLDATGPIDFADVGAQVRDSGADTLVGAVTGAAFGQVVLGARGAGANLRVILSPSGYDQSL LDVFGRVLSGVYIFVDYQPFELDTPGHRAFLDAMTRYAPYLQSPNRQAALSGWISTDMFLRGLAEAGRCPTRERFIEGLR AVRDYAADGLLPAPIDFTASFGQLGRCYTFLQVAPDASRFDVLRPAPRCGRLEH >Mature_454_residues MRISPVTEAAGGLSAAVRRRRTRRRPHLASRQRTRLFTRLRTRLRTLPIVLAALLVAAGCVSCVSWNDSSDATDSHGSGA SCPPVPGVTADEVRLGLLFPNTGNAASLFDPFRAGVDARLGVANAAGGVQGRSIEYSWRDDESQPSVNETAARMLVDQHQ VFGIVESTTAAAGSAEFLHSRGIPVTGTSLEASWTTFDNMFSYSNMIADGASVSTWGDFVAERGGTTALIAASSFSAASG AFGEELAASLEAAGVRVVGTLDATGPIDFADVGAQVRDSGADTLVGAVTGAAFGQVVLGARGAGANLRVILSPSGYDQSL LDVFGRVLSGVYIFVDYQPFELDTPGHRAFLDAMTRYAPYLQSPNRQAALSGWISTDMFLRGLAEAGRCPTRERFIEGLR AVRDYAADGLLPAPIDFTASFGQLGRCYTFLQVAPDASRFDVLRPAPRCGRLEH
Specific function: Unknown
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48019; Mature: 48019
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRISPVTEAAGGLSAAVRRRRTRRRPHLASRQRTRLFTRLRTRLRTLPIVLAALLVAAGC CCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSCVSWNDSSDATDSHGSGASCPPVPGVTADEVRLGLLFPNTGNAASLFDPFRAGVDARL HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHCCCCCCC GVANAAGGVQGRSIEYSWRDDESQPSVNETAARMLVDQHQVFGIVESTTAAAGSAEFLHS CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEHHHHHCCCCCHHHHHH RGIPVTGTSLEASWTTFDNMFSYSNMIADGASVSTWGDFVAERGGTTALIAASSFSAASG CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC AFGEELAASLEAAGVRVVGTLDATGPIDFADVGAQVRDSGADTLVGAVTGAAFGQVVLGA CHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCHHHCCCCHHHHHHHHHHHHHHHHEEC RGAGANLRVILSPSGYDQSLLDVFGRVLSGVYIFVDYQPFELDTPGHRAFLDAMTRYAPY CCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH LQSPNRQAALSGWISTDMFLRGLAEAGRCPTRERFIEGLRAVRDYAADGLLPAPIDFTAS HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC FGQLGRCYTFLQVAPDASRFDVLRPAPRCGRLEH HHHHHHHEEHEEECCCCHHHCCCCCCCCCCCCCC >Mature Secondary Structure MRISPVTEAAGGLSAAVRRRRTRRRPHLASRQRTRLFTRLRTRLRTLPIVLAALLVAAGC CCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSCVSWNDSSDATDSHGSGASCPPVPGVTADEVRLGLLFPNTGNAASLFDPFRAGVDARL HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCHHHHHHHHCCCCCCC GVANAAGGVQGRSIEYSWRDDESQPSVNETAARMLVDQHQVFGIVESTTAAAGSAEFLHS CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEHHHHHCCCCCHHHHHH RGIPVTGTSLEASWTTFDNMFSYSNMIADGASVSTWGDFVAERGGTTALIAASSFSAASG CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC AFGEELAASLEAAGVRVVGTLDATGPIDFADVGAQVRDSGADTLVGAVTGAAFGQVVLGA CHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCHHHCCCCHHHHHHHHHHHHHHHHEEC RGAGANLRVILSPSGYDQSLLDVFGRVLSGVYIFVDYQPFELDTPGHRAFLDAMTRYAPY CCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH LQSPNRQAALSGWISTDMFLRGLAEAGRCPTRERFIEGLRAVRDYAADGLLPAPIDFTAS HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC FGQLGRCYTFLQVAPDASRFDVLRPAPRCGRLEH HHHHHHHEEHEEECCCCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA