| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yjiB [H]
Identifier: 158317196
GI number: 158317196
Start: 6584905
End: 6586161
Strand: Reverse
Name: yjiB [H]
Synonym: Franean1_5443
Alternate gene names: 158317196
Gene position: 6586161-6584905 (Counterclockwise)
Preceding gene: 158317201
Following gene: 158317195
Centisome position: 73.33
GC content: 67.94
Gene sequence:
>1257_bases ATGTCGTATGACTCGACAGCGGCAAGCGGGGAGCGCGCCGGACCGGCCGGTGAATCGATCGATGACGACTGGTGCCGGAA CCAGTTCGATCACCTGTCGCAGGAACTCGTCGACAACCTGTACCCGGCCCTGACGCGGATGCGATCGTTATGCCCGGTGA CCCATAGCAACCAGTATGGCGGTTACTGGGTCGTCACCAAGTATGACGACGTCCTGCGGGTCGCCCAGGAGTGGGAGACG TTCTCCTCGGCGTTCGGGCTGACGGTGCCCCCCAGCCCGATCGCGACGCGGAACCTGCCGGTGGAGATCGACCCGCCGCT GCAACGTGAGTTCAAGCGGCTGATCAACGCCTACTTCACGCCGAAGGCCGTGCGGCCGTGGGAGCCCCGGACCAGGGCGT TGGTGAACCGCCTGATCGACGGTTTCGTCGAGCGCGGCGAGTGCGACTTCATGGCCGAGTTCGCCCGGCCCTACCCGGCT CTTTCCTTCTTCGACGTCGCGATCGGCGCACCCGCCGACCAGATCGAGCGGGTCGCCTATCTGGCCTCGAAGTCCGGCGC CCCGAAGGATCCCGACGCGGCGGCATGCTGGCGCGGCCTGTCCGAGTGGATCAACGGGTTCCTCGAGCAGCGGCGGTGCG AGCCACCGCGCGGCGACGTCGTCGATGCCATTCTCAGCGCCGAGATTCAGGGCCGGCCGATCACGCACGAGGAGATCATC GGCACGGTGCAGCTGCTGATCCTCGGCGGGTTGGAGACGACGGCCGGGGCGCTCGGGCAGATCATGCTCCGGTTCTGCCG CCAGCCGGAGATCCCGGCCGCGCTGCGCGAGAACCCCGACCTGCTGCCGCAGGCCGTGGAGGAGCTGTTACGCCTCGACG GCCCGTTCGTCCAGATCACCCGCACCGCCATGCATGACACCGAGATCGACGGCCATCAGATCAAGCAGGGCGAGAAGGTC ATCATCTACTGGGCCTCGGCGAACCGGGACGAGGGCGAGTTCCCCGCCTCCGACGAGTTCGACCTGGACCGGAAGATCAA TCGGCACGTGGCCTTCGGCGTGGGGCCCCACCGCTGCGTTGGCTCCAACCTGGCCCGGATGAACCTGCGCATCGCCCTCG ACGAGCTGCTCAGGCGGCTCCACGACCTCCGGCTGCGAGACGGCGCCGAGATCCACTTCCATCCGACGGTGAACCGGGCG CCGGTCGCCGTTCCGGTCACGTTCACCCCCGGTCCCCGGGTCGGCGCCGATGGGTAA
Upstream 100 bases:
>100_bases CGCGGGGGCGGTGACCGCCCTGGCCACCCTGGACCGCCCGGCGCCGACGACGTAATCTTCGAACGCGATCGCCGCGTACC GCTACCGGTGAGGAGATTCC
Downstream 100 bases:
>100_bases CCCGCCCCGCGCGGGCCTGCCGACCTCGCACGGCATCGAGCACCTGAACATCACCGTCGCCGACCTCGACGAGGCGACCG CGTTCTTCACGGACGTCTTC
Product: cytochrome P450
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MSYDSTAASGERAGPAGESIDDDWCRNQFDHLSQELVDNLYPALTRMRSLCPVTHSNQYGGYWVVTKYDDVLRVAQEWET FSSAFGLTVPPSPIATRNLPVEIDPPLQREFKRLINAYFTPKAVRPWEPRTRALVNRLIDGFVERGECDFMAEFARPYPA LSFFDVAIGAPADQIERVAYLASKSGAPKDPDAAACWRGLSEWINGFLEQRRCEPPRGDVVDAILSAEIQGRPITHEEII GTVQLLILGGLETTAGALGQIMLRFCRQPEIPAALRENPDLLPQAVEELLRLDGPFVQITRTAMHDTEIDGHQIKQGEKV IIYWASANRDEGEFPASDEFDLDRKINRHVAFGVGPHRCVGSNLARMNLRIALDELLRRLHDLRLRDGAEIHFHPTVNRA PVAVPVTFTPGPRVGADG
Sequences:
>Translated_418_residues MSYDSTAASGERAGPAGESIDDDWCRNQFDHLSQELVDNLYPALTRMRSLCPVTHSNQYGGYWVVTKYDDVLRVAQEWET FSSAFGLTVPPSPIATRNLPVEIDPPLQREFKRLINAYFTPKAVRPWEPRTRALVNRLIDGFVERGECDFMAEFARPYPA LSFFDVAIGAPADQIERVAYLASKSGAPKDPDAAACWRGLSEWINGFLEQRRCEPPRGDVVDAILSAEIQGRPITHEEII GTVQLLILGGLETTAGALGQIMLRFCRQPEIPAALRENPDLLPQAVEELLRLDGPFVQITRTAMHDTEIDGHQIKQGEKV IIYWASANRDEGEFPASDEFDLDRKINRHVAFGVGPHRCVGSNLARMNLRIALDELLRRLHDLRLRDGAEIHFHPTVNRA PVAVPVTFTPGPRVGADG >Mature_417_residues SYDSTAASGERAGPAGESIDDDWCRNQFDHLSQELVDNLYPALTRMRSLCPVTHSNQYGGYWVVTKYDDVLRVAQEWETF SSAFGLTVPPSPIATRNLPVEIDPPLQREFKRLINAYFTPKAVRPWEPRTRALVNRLIDGFVERGECDFMAEFARPYPAL SFFDVAIGAPADQIERVAYLASKSGAPKDPDAAACWRGLSEWINGFLEQRRCEPPRGDVVDAILSAEIQGRPITHEEIIG TVQLLILGGLETTAGALGQIMLRFCRQPEIPAALRENPDLLPQAVEELLRLDGPFVQITRTAMHDTEIDGHQIKQGEKVI IYWASANRDEGEFPASDEFDLDRKINRHVAFGVGPHRCVGSNLARMNLRIALDELLRRLHDLRLRDGAEIHFHPTVNRAP VAVPVTFTPGPRVGADG
Specific function: Unknown
COG id: COG2124
COG function: function code Q; Cytochrome P450
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome P450 family [H]
Homologues:
Organism=Drosophila melanogaster, GI17933518, Length=208, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001128 - InterPro: IPR002397 - InterPro: IPR017972 [H]
Pfam domain/function: PF00067 p450 [H]
EC number: NA
Molecular weight: Translated: 46655; Mature: 46524
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00086 CYTOCHROME_P450
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYDSTAASGERAGPAGESIDDDWCRNQFDHLSQELVDNLYPALTRMRSLCPVTHSNQYG CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GYWVVTKYDDVLRVAQEWETFSSAFGLTVPPSPIATRNLPVEIDPPLQREFKRLINAYFT CEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCC PKAVRPWEPRTRALVNRLIDGFVERGECDFMAEFARPYPALSFFDVAIGAPADQIERVAY CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH LASKSGAPKDPDAAACWRGLSEWINGFLEQRRCEPPRGDVVDAILSAEIQGRPITHEEII HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHH GTVQLLILGGLETTAGALGQIMLRFCRQPEIPAALRENPDLLPQAVEELLRLDGPFVQIT HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEE RTAMHDTEIDGHQIKQGEKVIIYWASANRDEGEFPASDEFDLDRKINRHVAFGVGPHRCV HHHHHCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCEEEECCCCHHHH GSNLARMNLRIALDELLRRLHDLRLRDGAEIHFHPTVNRAPVAVPVTFTPGPRVGADG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCC >Mature Secondary Structure SYDSTAASGERAGPAGESIDDDWCRNQFDHLSQELVDNLYPALTRMRSLCPVTHSNQYG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GYWVVTKYDDVLRVAQEWETFSSAFGLTVPPSPIATRNLPVEIDPPLQREFKRLINAYFT CEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCC PKAVRPWEPRTRALVNRLIDGFVERGECDFMAEFARPYPALSFFDVAIGAPADQIERVAY CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH LASKSGAPKDPDAAACWRGLSEWINGFLEQRRCEPPRGDVVDAILSAEIQGRPITHEEII HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHH GTVQLLILGGLETTAGALGQIMLRFCRQPEIPAALRENPDLLPQAVEELLRLDGPFVQIT HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEE RTAMHDTEIDGHQIKQGEKVIIYWASANRDEGEFPASDEFDLDRKINRHVAFGVGPHRCV HHHHHCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCEEEECCCCHHHH GSNLARMNLRIALDELLRRLHDLRLRDGAEIHFHPTVNRAPVAVPVTFTPGPRVGADG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]