| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317189
Identifier: 158317189
GI number: 158317189
Start: 6574335
End: 6575750
Strand: Reverse
Name: 158317189
Synonym: Franean1_5436
Alternate gene names: NA
Gene position: 6575750-6574335 (Counterclockwise)
Preceding gene: 158317190
Following gene: 158317188
Centisome position: 73.21
GC content: 64.69
Gene sequence:
>1416_bases ATGGCGACCGACGGCCCGTCGACGACTGACACTCCGCCTCCTCCGCCACCACCTCCGCCGCCGGACACGTCCACCCGGGA GAAGGCTTCGGCACTCGACGGCCGGAGCCTGTCCGGTGGCGCCGCTCAGGACGCCACGCGACCTGAGCACGAGAGCGGCA GCGCGCGGACAGCTGAGCCCGGCACCCAGGACAAGATGAGTCCGCTCGACGGCGATCCCACGTCGCACGAACCGCAGAAC ACAGACCAGCAAAGCTCGGCGAAGCAGGACCGGGAACCACAGGGGCTGGAGCCGATAGGGCTGGAGCCGCCAAGGCGCAG TCTGGAACCGACGCCCGAGGCGTCGACGACGGAGGAGACAAGCTCCGTCGTCGGCGACGACAACGGCCACGGGCCCTACG CCGAAGTCCAACCGGATCCGGATCCGGAACCCGAGAGTGAGCCGGAGCCGGAGGTTGATCCCGGGTCTGAGCGGCACCCT GAGCCCGAACGCGAGCCGGAGCCGGAACCCGAAAGACCTACCAACGCCGACCGGCAGACGGACGCGGACGGCAACCCGGT CGCAGGGGAGACCTCGACTCGAACAACAGTGGACAACGACGCGGATGACCCCGGTGTCTCGAAACCAGAACTGACAGGTG CTCTCGCGGCCGAGGTGGATACGCCAACCGCCCAGGCCGACGGGCCCGCGACCGGTGATGTCCGGACGTCCGGCGACCAG CGGGATGCGAACGACAGGACCATCGACCCCGACGCGGTGTCGGTCAAGCCGGACGGTTCCCCGTGGCCCGAGTCCCCACT CAATAGGATAGAACCGCTTCCGAAACTCAACGAAACCGACCTTCGGCGAGGCGAGAGCGGCCTAATTGAATCGGTCGACG GGACGCCCATCCGCGACTATCTTCACGGACTCGCCGATGAAAGAACGGACGGATATCTTGACGCGCGTCGGGACGGAACT GTAGCGAAGTCCGAGGTGGCGCCCGTTACCTCTGTCCTCCTGGATACCCGTACCGGTCGTATATATGAGGCCGTCAACCA GGGGAAGGAGATTCCGAAAGATCTTCACTCGATCCTTCAGGAGCGTCTCGACGGGCTCGTGGTCGCGGCAAAAGAGAACC CGGACGCCTACCGGCATCGCTTCGGTGAGTCGAGCGGATTCCCTCACCCATCTGCCGCGGGCACTCATGCCGAAGTGCTA AATGTTAGTCGCGCGCTGTACGATCGGGAGGCGATGGGATATCAGGTGAGCGCTGAATCGCTTGGTGAAATGCTCTTGGA TAACCGATTCCCCTACCGGCCGGAGGGCAAGATGATGGCTCCTTGTTGCCCAAACTGTACTGCTATTCTCGGAGGCGACG GTGGCGTAGAGTCCATCCCCGGAAAGCTTCCGGTCGACGAATGGAGAAGGCAGTGA
Upstream 100 bases:
>100_bases GCGCTGCGCCTGGCGTGCGGCGACGCCGACCTGGAGGCGCTGCACTTCCAGGTCGCCGACCTGCTGGAGAAGTACGTCGT GGACGGAGGGCGCTGACCGA
Downstream 100 bases:
>100_bases CTGAATCCGATCCGGTTCGTTCGGTGAATATTGATGACATCGAATACACGGACGATCTTTTCGTCATCTATGAAGGTGAG CCTTTCACTGGTGAGGTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MATDGPSTTDTPPPPPPPPPPDTSTREKASALDGRSLSGGAAQDATRPEHESGSARTAEPGTQDKMSPLDGDPTSHEPQN TDQQSSAKQDREPQGLEPIGLEPPRRSLEPTPEASTTEETSSVVGDDNGHGPYAEVQPDPDPEPESEPEPEVDPGSERHP EPEREPEPEPERPTNADRQTDADGNPVAGETSTRTTVDNDADDPGVSKPELTGALAAEVDTPTAQADGPATGDVRTSGDQ RDANDRTIDPDAVSVKPDGSPWPESPLNRIEPLPKLNETDLRRGESGLIESVDGTPIRDYLHGLADERTDGYLDARRDGT VAKSEVAPVTSVLLDTRTGRIYEAVNQGKEIPKDLHSILQERLDGLVVAAKENPDAYRHRFGESSGFPHPSAAGTHAEVL NVSRALYDREAMGYQVSAESLGEMLLDNRFPYRPEGKMMAPCCPNCTAILGGDGGVESIPGKLPVDEWRRQ
Sequences:
>Translated_471_residues MATDGPSTTDTPPPPPPPPPPDTSTREKASALDGRSLSGGAAQDATRPEHESGSARTAEPGTQDKMSPLDGDPTSHEPQN TDQQSSAKQDREPQGLEPIGLEPPRRSLEPTPEASTTEETSSVVGDDNGHGPYAEVQPDPDPEPESEPEPEVDPGSERHP EPEREPEPEPERPTNADRQTDADGNPVAGETSTRTTVDNDADDPGVSKPELTGALAAEVDTPTAQADGPATGDVRTSGDQ RDANDRTIDPDAVSVKPDGSPWPESPLNRIEPLPKLNETDLRRGESGLIESVDGTPIRDYLHGLADERTDGYLDARRDGT VAKSEVAPVTSVLLDTRTGRIYEAVNQGKEIPKDLHSILQERLDGLVVAAKENPDAYRHRFGESSGFPHPSAAGTHAEVL NVSRALYDREAMGYQVSAESLGEMLLDNRFPYRPEGKMMAPCCPNCTAILGGDGGVESIPGKLPVDEWRRQ >Mature_470_residues ATDGPSTTDTPPPPPPPPPPDTSTREKASALDGRSLSGGAAQDATRPEHESGSARTAEPGTQDKMSPLDGDPTSHEPQNT DQQSSAKQDREPQGLEPIGLEPPRRSLEPTPEASTTEETSSVVGDDNGHGPYAEVQPDPDPEPESEPEPEVDPGSERHPE PEREPEPEPERPTNADRQTDADGNPVAGETSTRTTVDNDADDPGVSKPELTGALAAEVDTPTAQADGPATGDVRTSGDQR DANDRTIDPDAVSVKPDGSPWPESPLNRIEPLPKLNETDLRRGESGLIESVDGTPIRDYLHGLADERTDGYLDARRDGTV AKSEVAPVTSVLLDTRTGRIYEAVNQGKEIPKDLHSILQERLDGLVVAAKENPDAYRHRFGESSGFPHPSAAGTHAEVLN VSRALYDREAMGYQVSAESLGEMLLDNRFPYRPEGKMMAPCCPNCTAILGGDGGVESIPGKLPVDEWRRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50347; Mature: 50215
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDGPSTTDTPPPPPPPPPPDTSTREKASALDGRSLSGGAAQDATRPEHESGSARTAEP CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GTQDKMSPLDGDPTSHEPQNTDQQSSAKQDREPQGLEPIGLEPPRRSLEPTPEASTTEET CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH SSVVGDDNGHGPYAEVQPDPDPEPESEPEPEVDPGSERHPEPEREPEPEPERPTNADRQT HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DADGNPVAGETSTRTTVDNDADDPGVSKPELTGALAAEVDTPTAQADGPATGDVRTSGDQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC RDANDRTIDPDAVSVKPDGSPWPESPLNRIEPLPKLNETDLRRGESGLIESVDGTPIRDY CCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCEECCCCCCHHHH LHGLADERTDGYLDARRDGTVAKSEVAPVTSVLLDTRTGRIYEAVNQGKEIPKDLHSILQ HHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH ERLDGLVVAAKENPDAYRHRFGESSGFPHPSAAGTHAEVLNVSRALYDREAMGYQVSAES HHHCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECHHH LGEMLLDNRFPYRPEGKMMAPCCPNCTAILGGDGGVESIPGKLPVDEWRRQ HHHHHHHCCCCCCCCCCEECCCCCCCEEEECCCCCHHCCCCCCCHHHHHCC >Mature Secondary Structure ATDGPSTTDTPPPPPPPPPPDTSTREKASALDGRSLSGGAAQDATRPEHESGSARTAEP CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GTQDKMSPLDGDPTSHEPQNTDQQSSAKQDREPQGLEPIGLEPPRRSLEPTPEASTTEET CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH SSVVGDDNGHGPYAEVQPDPDPEPESEPEPEVDPGSERHPEPEREPEPEPERPTNADRQT HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DADGNPVAGETSTRTTVDNDADDPGVSKPELTGALAAEVDTPTAQADGPATGDVRTSGDQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC RDANDRTIDPDAVSVKPDGSPWPESPLNRIEPLPKLNETDLRRGESGLIESVDGTPIRDY CCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCEECCCCCCHHHH LHGLADERTDGYLDARRDGTVAKSEVAPVTSVLLDTRTGRIYEAVNQGKEIPKDLHSILQ HHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH ERLDGLVVAAKENPDAYRHRFGESSGFPHPSAAGTHAEVLNVSRALYDREAMGYQVSAES HHHCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECHHH LGEMLLDNRFPYRPEGKMMAPCCPNCTAILGGDGGVESIPGKLPVDEWRRQ HHHHHHHCCCCCCCCCCEECCCCCCCEEEECCCCCHHCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA