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The map label for this gene is uvrD [C]

Identifier: 158317176

GI number: 158317176

Start: 6559865

End: 6562330

Strand: Direct

Name: uvrD [C]

Synonym: Franean1_5423

Alternate gene names: 158317176

Gene position: 6559865-6562330 (Clockwise)

Preceding gene: 158317175

Following gene: 158317177

Centisome position: 73.03

GC content: 74.66

Gene sequence:

>2466_bases
ATGAGCAACATCACCATGTCGCGGCAGTTCCGCAGGCGGCTGGACATCGACGGCTCGCTCAAGCAGCGGGCCTGGGACTT
CCTGACCAAGCTGATGGCCGATCCGGCCAGCCCCGGCCTGCACATCGAGCCGATCAGGAACTCGGCCGACCCGCGGGTGC
GCACGGGGCGGGTCAACGACAACTTCCGCGCCGTCATGTTCCTGGTCGCCGAGACACCGGAACCGCACTTCGTGCTCGCG
GCCGTCGCCCCGCACGACGAGGCGAACGCGCTGGCGCAACGGCTCGTACTGACCACGAACCCGGTCAGCGGCGTGCTCGA
GGTGATCGAGAACGCGGCGCCGGTGGTCGCCCCCGGCCGGCGGCCCGTCCAGGGGAACGGCACGGCGGGGTGGGTCCCGC
AGGGCCCGCTGGCCGGGTTCACTCCGCGTGAGCTCGAGGACCTCGGCCTCTCCGCCACGCTCGCCCGGCGGGCCGTGACC
TGCCCGGACGAGGACGCGCTCGTGGCCGCCGCCGGCGACGAACGGGTACCGCCGTGGCAGGCCGACGCGCTGCTCGCCCT
CGCCACCGGCACGCCGATCCACGAGATCCACGAACAGCTCGGCCTGTCGGACCCGGAGACCGAGCAGGCCCCCGCGCGCC
CCGACCGGGCCTACCAGGCCGACCAGGCCGACCAGGCCGACCAGGCCGACCAGGCCGACCAGGCCGACCGGACGAGGATC
GGCGTCGACGCCGACGCCGACGTCCCCACCAGGCCTGCCAGCGACGCCGACGTCGCCGCGGCGCTGCGGCGGCCCAGCAC
GCTGATGGATTTCGTGCGCATCGAGACCGACAGCGAGCTGCGGCGGGTCCTCGACGGCAGCTTCGCCGAGTGGCGCGTCT
TCCTGCACCCCGAGCAGCGCCGGTACGCCTACGTGCGGACCAGCGGGGCGTACCGGCTCTCCGGCGGGGCCGGCACCGGC
AAGACCGTCGTCGCGCTGCACCGGGCGCGCCGCCTCGCGACCGCGCCGGCCGCGCCGCGGGTCGTGCTCACCACGTTCAC
CCGGAACCTGGCCGACAACCTCGCCCAGGACCTGCGGACCCTGGACGCCTCGGTGTGGCAGGGCCGCCTCGGCCAGGCCG
GGGTGACCGTCCGCGGGATCGACCAGCTCGCCCTCGACGTGCTCGGTACCGTGCCCGCCGACATCCGGGCCGCCACCGGG
GGTGATCTGCTCTCCGCCGGTACCGTCCCGAGGCCGCTGTCCGACACCGACGAGCGCACCATGTGGACGGATGCGGCCCG
CGCCGCCGGACTCACCGGTGATCTCGCCCGGCCCGCGTTCCTGCGCGGCGAGTACCGCATGGTCGTCCTCGCGAACGACC
TGACCACCCGCGCGCAGTACCTGCGGGTGCCCCGGCCCGGGCGCGGCACCCGCCTCTCCCGCGCGCAGCGGATGGCGATC
TGGGACGCGGTGGAGGCGTACCGCCGCCAGCTCGCACTGGGCCAGACGGCGAGCTATGCCGAGATCGCCGTCCTCGCCGC
CCGCTGCGCCGACGCCTTCGCCGCCGCGGGCGGCCCACGGCCCGCCGACCACGTCGTCGTCGACGAGGCACAGGACCTGC
ACCCCGGCCACTGGCGGCTGCTGCGCGCCCTCGTCGCCGAAGGCCCCGACGACCTGTTCCTCGCCGAGGACTCCCACCAG
CGCATCTACGGCGAGAAGGTCGTCCTCTCCCGCTACGGCATCCAGGTGCGGGGTCGCAGCCGGCGGCTGACCCTCAACTA
CCGGACCACCGCGCAGAACCTGCGGTTCGCGGTCGGCATTCTCGCCGGCGACACGGACGTCACCGATCTGGAAGGCGACG
CCGAGGCCACCAGCGGCTACCGCTCCGCGATGAGCGGGCCGGCCCCCGTGCTGCGCCCCTGCTCCGGGCTCACCGAGGAA
CTCGACGTCACCGCCGAAACGCTGCGCGGCTGGTTCGGCCCGCCGTCCGGCCCGAACGGCAACGGATCGAGTTCGGCGGC
TGGCGCTGGGGCTGGGACCAGGGCTGGGGCTGGGGCTGGGTTGGACGACGCGCAGGGCAGGGTGGAGGCCGGCAGCGTCG
GCGTCCTCACCCGCAGCGCCCGGGAACGCGACATCGTGGCGCAGGGGCTGCGCGACCGCGGGATCGCGGCCCAGGTGATC
GCCGGCCACGCCCTGCCCGGCCATGCGGGCGGCCGGGACACCCACCGGTCGGACGCGCCCCGGCTCATGACCATGCACCG
CGCCAAGGGACTCGAGTTCAGCCGGGTGGTGCTGTTCGGCATCGACCGCAAAAGCGTCCCGTCCGAACGGGTGCTCGCCA
CCGAACCCGACGACGAGCGGGACGACACCCTCGCCCGCGAGCGCTTCCTGCTCTACGTCGCCGCGTCCCGCGCCCGCGAC
GCGCTCGTCGTCGTCTGGGCCGGTGACGCCTCGCCGTTCCTCCCCGTCCAACCGTCAGGGGGCTGA

Upstream 100 bases:

>100_bases
TCGCCGACCCCGACCCGGCGCGGGTCGCCGGCCTGCTGGCGACGGCCGGCGGGGGCGGCACAGACGGCGGCGGCACGGAC
ATCCCGGTGGAGGGAACCCG

Downstream 100 bases:

>100_bases
GCGTGCCAGGACAGCGGACGGTCATCGCGGGGCGATACGAGCTGACCGCGCCCATCAGCCGAGGCGGGATGGGGCAGGTC
TGGCACGGATACGACACCGT

Product: UvrD/REP helicase

Products: NA

Alternate protein names: DNA Helicase; Helicase; UvrD/Rep Helicase; UvrD/REP Helicase Domain Protein; Superfamily I DNA/RNA Helicase; Superfamily Protein I DNA/RNA Helicase; UvrD/REP Type DNA Helicase; UvrD/REP Family ATP-Dependent DNA Helicase; NA Helicase.; DNA Helicase II-Like Protein; NERD Domain-Containing Protein; DNA/RNA Helicase Superfamily I; Superfamily I DNA/RNA Helicase-Like Protein; Uvrd/Rep Helicase; NERD Domain Protein; DNA Helicase II

Number of amino acids: Translated: 821; Mature: 820

Protein sequence:

>821_residues
MSNITMSRQFRRRLDIDGSLKQRAWDFLTKLMADPASPGLHIEPIRNSADPRVRTGRVNDNFRAVMFLVAETPEPHFVLA
AVAPHDEANALAQRLVLTTNPVSGVLEVIENAAPVVAPGRRPVQGNGTAGWVPQGPLAGFTPRELEDLGLSATLARRAVT
CPDEDALVAAAGDERVPPWQADALLALATGTPIHEIHEQLGLSDPETEQAPARPDRAYQADQADQADQADQADQADRTRI
GVDADADVPTRPASDADVAAALRRPSTLMDFVRIETDSELRRVLDGSFAEWRVFLHPEQRRYAYVRTSGAYRLSGGAGTG
KTVVALHRARRLATAPAAPRVVLTTFTRNLADNLAQDLRTLDASVWQGRLGQAGVTVRGIDQLALDVLGTVPADIRAATG
GDLLSAGTVPRPLSDTDERTMWTDAARAAGLTGDLARPAFLRGEYRMVVLANDLTTRAQYLRVPRPGRGTRLSRAQRMAI
WDAVEAYRRQLALGQTASYAEIAVLAARCADAFAAAGGPRPADHVVVDEAQDLHPGHWRLLRALVAEGPDDLFLAEDSHQ
RIYGEKVVLSRYGIQVRGRSRRLTLNYRTTAQNLRFAVGILAGDTDVTDLEGDAEATSGYRSAMSGPAPVLRPCSGLTEE
LDVTAETLRGWFGPPSGPNGNGSSSAAGAGAGTRAGAGAGLDDAQGRVEAGSVGVLTRSARERDIVAQGLRDRGIAAQVI
AGHALPGHAGGRDTHRSDAPRLMTMHRAKGLEFSRVVLFGIDRKSVPSERVLATEPDDERDDTLARERFLLYVAASRARD
ALVVVWAGDASPFLPVQPSGG

Sequences:

>Translated_821_residues
MSNITMSRQFRRRLDIDGSLKQRAWDFLTKLMADPASPGLHIEPIRNSADPRVRTGRVNDNFRAVMFLVAETPEPHFVLA
AVAPHDEANALAQRLVLTTNPVSGVLEVIENAAPVVAPGRRPVQGNGTAGWVPQGPLAGFTPRELEDLGLSATLARRAVT
CPDEDALVAAAGDERVPPWQADALLALATGTPIHEIHEQLGLSDPETEQAPARPDRAYQADQADQADQADQADQADRTRI
GVDADADVPTRPASDADVAAALRRPSTLMDFVRIETDSELRRVLDGSFAEWRVFLHPEQRRYAYVRTSGAYRLSGGAGTG
KTVVALHRARRLATAPAAPRVVLTTFTRNLADNLAQDLRTLDASVWQGRLGQAGVTVRGIDQLALDVLGTVPADIRAATG
GDLLSAGTVPRPLSDTDERTMWTDAARAAGLTGDLARPAFLRGEYRMVVLANDLTTRAQYLRVPRPGRGTRLSRAQRMAI
WDAVEAYRRQLALGQTASYAEIAVLAARCADAFAAAGGPRPADHVVVDEAQDLHPGHWRLLRALVAEGPDDLFLAEDSHQ
RIYGEKVVLSRYGIQVRGRSRRLTLNYRTTAQNLRFAVGILAGDTDVTDLEGDAEATSGYRSAMSGPAPVLRPCSGLTEE
LDVTAETLRGWFGPPSGPNGNGSSSAAGAGAGTRAGAGAGLDDAQGRVEAGSVGVLTRSARERDIVAQGLRDRGIAAQVI
AGHALPGHAGGRDTHRSDAPRLMTMHRAKGLEFSRVVLFGIDRKSVPSERVLATEPDDERDDTLARERFLLYVAASRARD
ALVVVWAGDASPFLPVQPSGG
>Mature_820_residues
SNITMSRQFRRRLDIDGSLKQRAWDFLTKLMADPASPGLHIEPIRNSADPRVRTGRVNDNFRAVMFLVAETPEPHFVLAA
VAPHDEANALAQRLVLTTNPVSGVLEVIENAAPVVAPGRRPVQGNGTAGWVPQGPLAGFTPRELEDLGLSATLARRAVTC
PDEDALVAAAGDERVPPWQADALLALATGTPIHEIHEQLGLSDPETEQAPARPDRAYQADQADQADQADQADQADRTRIG
VDADADVPTRPASDADVAAALRRPSTLMDFVRIETDSELRRVLDGSFAEWRVFLHPEQRRYAYVRTSGAYRLSGGAGTGK
TVVALHRARRLATAPAAPRVVLTTFTRNLADNLAQDLRTLDASVWQGRLGQAGVTVRGIDQLALDVLGTVPADIRAATGG
DLLSAGTVPRPLSDTDERTMWTDAARAAGLTGDLARPAFLRGEYRMVVLANDLTTRAQYLRVPRPGRGTRLSRAQRMAIW
DAVEAYRRQLALGQTASYAEIAVLAARCADAFAAAGGPRPADHVVVDEAQDLHPGHWRLLRALVAEGPDDLFLAEDSHQR
IYGEKVVLSRYGIQVRGRSRRLTLNYRTTAQNLRFAVGILAGDTDVTDLEGDAEATSGYRSAMSGPAPVLRPCSGLTEEL
DVTAETLRGWFGPPSGPNGNGSSSAAGAGAGTRAGAGAGLDDAQGRVEAGSVGVLTRSARERDIVAQGLRDRGIAAQVIA
GHALPGHAGGRDTHRSDAPRLMTMHRAKGLEFSRVVLFGIDRKSVPSERVLATEPDDERDDTLARERFLLYVAASRARDA
LVVVWAGDASPFLPVQPSGG

Specific function: Has Both Atpase And Helicase Activities. Unwinds DNA Duplexes With 3' To 5' Polarity With Respect To The Bound Strand And Initiates Unwinding Most Effectively When A Single-Stranded Region Is Present. Involved In The Post-Incision Events Of Nucleotide Exc

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.6.1.- [C]

Molecular weight: Translated: 87953; Mature: 87821

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNITMSRQFRRRLDIDGSLKQRAWDFLTKLMADPASPGLHIEPIRNSADPRVRTGRVND
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCCCC
NFRAVMFLVAETPEPHFVLAAVAPHDEANALAQRLVLTTNPVSGVLEVIENAAPVVAPGR
CCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHEEECCCHHHHHHHHHCCCCEECCCC
RPVQGNGTAGWVPQGPLAGFTPRELEDLGLSATLARRAVTCPDEDALVAAAGDERVPPWQ
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCC
ADALLALATGTPIHEIHEQLGLSDPETEQAPARPDRAYQADQADQADQADQADQADRTRI
CCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEE
GVDADADVPTRPASDADVAAALRRPSTLMDFVRIETDSELRRVLDGSFAEWRVFLHPEQR
CCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCC
RYAYVRTSGAYRLSGGAGTGKTVVALHRARRLATAPAAPRVVLTTFTRNLADNLAQDLRT
EEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHH
LDASVWQGRLGQAGVTVRGIDQLALDVLGTVPADIRAATGGDLLSAGTVPRPLSDTDERT
HHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCCEECCCCCEEECCCCCCCCCCCCCHH
MWTDAARAAGLTGDLARPAFLRGEYRMVVLANDLTTRAQYLRVPRPGRGTRLSRAQRMAI
HHHHHHHHCCCCCCCCCCCEECCCEEEEEEECCHHHHHHHEECCCCCCCCHHHHHHHHHH
WDAVEAYRRQLALGQTASYAEIAVLAARCADAFAAAGGPRPADHVVVDEAQDLHPGHWRL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHH
LRALVAEGPDDLFLAEDSHQRIYGEKVVLSRYGIQVRGRSRRLTLNYRTTAQNLRFAVGI
HHHHHHCCCCCEEEECCCCCHHHCCEEEEECCCEEEECCCEEEEEEEECCCCCCEEEEEE
LAGDTDVTDLEGDAEATSGYRSAMSGPAPVLRPCSGLTEELDVTAETLRGWFGPPSGPNG
EECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
NGSSSAAGAGAGTRAGAGAGLDDAQGRVEAGSVGVLTRSARERDIVAQGLRDRGIAAQVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHH
AGHALPGHAGGRDTHRSDAPRLMTMHRAKGLEFSRVVLFGIDRKSVPSERVLATEPDDER
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCCCCH
DDTLARERFLLYVAASRARDALVVVWAGDASPFLPVQPSGG
HHHHHHHHEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SNITMSRQFRRRLDIDGSLKQRAWDFLTKLMADPASPGLHIEPIRNSADPRVRTGRVND
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEECCCCC
NFRAVMFLVAETPEPHFVLAAVAPHDEANALAQRLVLTTNPVSGVLEVIENAAPVVAPGR
CCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHEEECCCHHHHHHHHHCCCCEECCCC
RPVQGNGTAGWVPQGPLAGFTPRELEDLGLSATLARRAVTCPDEDALVAAAGDERVPPWQ
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCC
ADALLALATGTPIHEIHEQLGLSDPETEQAPARPDRAYQADQADQADQADQADQADRTRI
CCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEE
GVDADADVPTRPASDADVAAALRRPSTLMDFVRIETDSELRRVLDGSFAEWRVFLHPEQR
CCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCC
RYAYVRTSGAYRLSGGAGTGKTVVALHRARRLATAPAAPRVVLTTFTRNLADNLAQDLRT
EEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHH
LDASVWQGRLGQAGVTVRGIDQLALDVLGTVPADIRAATGGDLLSAGTVPRPLSDTDERT
HHHHHHCCCCCCCCCEEECHHHHHHHHHHCCCCCCEECCCCCEEECCCCCCCCCCCCCHH
MWTDAARAAGLTGDLARPAFLRGEYRMVVLANDLTTRAQYLRVPRPGRGTRLSRAQRMAI
HHHHHHHHCCCCCCCCCCCEECCCEEEEEEECCHHHHHHHEECCCCCCCCHHHHHHHHHH
WDAVEAYRRQLALGQTASYAEIAVLAARCADAFAAAGGPRPADHVVVDEAQDLHPGHWRL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHH
LRALVAEGPDDLFLAEDSHQRIYGEKVVLSRYGIQVRGRSRRLTLNYRTTAQNLRFAVGI
HHHHHHCCCCCEEEECCCCCHHHCCEEEEECCCEEEECCCEEEEEEEECCCCCCEEEEEE
LAGDTDVTDLEGDAEATSGYRSAMSGPAPVLRPCSGLTEELDVTAETLRGWFGPPSGPNG
EECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
NGSSSAAGAGAGTRAGAGAGLDDAQGRVEAGSVGVLTRSARERDIVAQGLRDRGIAAQVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHH
AGHALPGHAGGRDTHRSDAPRLMTMHRAKGLEFSRVVLFGIDRKSVPSERVLATEPDDER
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCCCCH
DDTLARERFLLYVAASRARDALVVVWAGDASPFLPVQPSGG
HHHHHHHHEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: Hydrolase; In phosphorus-containing anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA