| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317167
Identifier: 158317167
GI number: 158317167
Start: 6531464
End: 6532777
Strand: Reverse
Name: 158317167
Synonym: Franean1_5414
Alternate gene names: NA
Gene position: 6532777-6531464 (Counterclockwise)
Preceding gene: 158317168
Following gene: 158317165
Centisome position: 72.73
GC content: 63.09
Gene sequence:
>1314_bases ATGTCATTGAGAAGGCGTTGGCTGGCGCTTTCCGTGGTCGTACTCGCATTTGCTCTGATCGGCTGTTCGAGCTCGCCGAT CCCAGAGCCGGACGATGGGGGAGGGGAGGGTGTGGCGGCGACGGCGAGAACTTCCCATGATCCACCCCTTCGCTTCGACT CGCTGTCAGCGATCACCCTGCCCCCCGAGGCCAGCGACTCGAGGATCAACCTTGGCGGGGAACTGCGGTACCCGTTGCCA GTGGTGCTTCACGGCATGACCGCCTTCGTCGGGGCGCCAGAAAGGATGCTCGCTGTCGACACCGAACGTGGAGGAGACGT ACTTGCCGTCTTCGCGCCAGACGGAGAGCCGTTGCAGCGTTCTGGTTCAAGCGGCTGGGTGGGGAGCAACTCTGCCGGTG CGCCGGTGGTCGGCGAAGTAGACGGACGGCCGGTCGTCCTCGCCGCCTTCACCACCCGACACCCCGGTGTGGGAACCCAG CGTAGCCGCCGCTACGCCGAGGTCGTCGAGGTCGATGCGGGGACCCTTGGGCGGCGCTGGATCACCCGGATCGAGATCTC GGATGAGATGTCCCTTTACGGCGGGCCTGTTGTCGCCGTCGTTGTCGGCATCCTGCCGGGGCGTGCCGTGGTGGAGGTGA GCCAGGACGACCGACACGATCTCCATCTGATCGACCTGGAAAATGGGAAAACCATCTGGTCGAAGCCGAACCACGGACCC TCCGTCGTCGCCGGGAATGTGATCGTCACAGTCGTCGACAAGAATCCAGATCTTCGTGGATCCTCCCTCGTCGGGCTCGC GAGCGAGGATGGCCGCGAGCTCTGGTCGGACAACTCCTATGGTCAGGACATCAAGGTCGGTCCGAACGGTGGAGGCATCG TTGTGGTCTCTGGAGCGGCGGACAACCTGTATCTTCGGATGGTCGACCCGACCGATGGTGCGATTAAGTCGGTCATCGAT CAGGAAGGCTCTCTCGGTCGCACCCAATTGGGCGTGGACTGTCTCTTCGATCAGAAGACCTCAATGGTGTGCAGCATGGA CGATCGATGGCTCTCCGTGTTTGATACTTCCTCGCAAAAATGGCTGTGGCGGCTCCCGGACGACAGTGCGGGCCGTGTGG CGCCGAGGGTGAACTTCGCCTGGCACGGCGCCGTCTATGGCGAGACTCGCGATGGACCAGTCGTGATCGACGCGATGACA GGCAAGGACCGAGAGGTCAATCCAGGCATCACGGCCTATCATGTGAACCAATACGTCGGCATCGGTCCAGACCCGCAGGG CTCCGGCGTGGCTGCCTTCCGCTCGGTCGGATAA
Upstream 100 bases:
>100_bases TCTCGCTCCGTCTCGCGCCAAAGTATGACATCATATAGTCACGAAATTCTAGGATTGCAGAATAGAAAGATGACCCAGAC CCTGTCGGAGCGTGTTTCTG
Downstream 100 bases:
>100_bases AAGTCCAGGTAAATGGCCTATGTCGCTTCGCAGCCCAGTACATCCGCGGACGTCCACCGTTGTCGTGGACGTCCGCGCTC ATCGCTACGCATGAGGGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MSLRRRWLALSVVVLAFALIGCSSSPIPEPDDGGGEGVAATARTSHDPPLRFDSLSAITLPPEASDSRINLGGELRYPLP VVLHGMTAFVGAPERMLAVDTERGGDVLAVFAPDGEPLQRSGSSGWVGSNSAGAPVVGEVDGRPVVLAAFTTRHPGVGTQ RSRRYAEVVEVDAGTLGRRWITRIEISDEMSLYGGPVVAVVVGILPGRAVVEVSQDDRHDLHLIDLENGKTIWSKPNHGP SVVAGNVIVTVVDKNPDLRGSSLVGLASEDGRELWSDNSYGQDIKVGPNGGGIVVVSGAADNLYLRMVDPTDGAIKSVID QEGSLGRTQLGVDCLFDQKTSMVCSMDDRWLSVFDTSSQKWLWRLPDDSAGRVAPRVNFAWHGAVYGETRDGPVVIDAMT GKDREVNPGITAYHVNQYVGIGPDPQGSGVAAFRSVG
Sequences:
>Translated_437_residues MSLRRRWLALSVVVLAFALIGCSSSPIPEPDDGGGEGVAATARTSHDPPLRFDSLSAITLPPEASDSRINLGGELRYPLP VVLHGMTAFVGAPERMLAVDTERGGDVLAVFAPDGEPLQRSGSSGWVGSNSAGAPVVGEVDGRPVVLAAFTTRHPGVGTQ RSRRYAEVVEVDAGTLGRRWITRIEISDEMSLYGGPVVAVVVGILPGRAVVEVSQDDRHDLHLIDLENGKTIWSKPNHGP SVVAGNVIVTVVDKNPDLRGSSLVGLASEDGRELWSDNSYGQDIKVGPNGGGIVVVSGAADNLYLRMVDPTDGAIKSVID QEGSLGRTQLGVDCLFDQKTSMVCSMDDRWLSVFDTSSQKWLWRLPDDSAGRVAPRVNFAWHGAVYGETRDGPVVIDAMT GKDREVNPGITAYHVNQYVGIGPDPQGSGVAAFRSVG >Mature_436_residues SLRRRWLALSVVVLAFALIGCSSSPIPEPDDGGGEGVAATARTSHDPPLRFDSLSAITLPPEASDSRINLGGELRYPLPV VLHGMTAFVGAPERMLAVDTERGGDVLAVFAPDGEPLQRSGSSGWVGSNSAGAPVVGEVDGRPVVLAAFTTRHPGVGTQR SRRYAEVVEVDAGTLGRRWITRIEISDEMSLYGGPVVAVVVGILPGRAVVEVSQDDRHDLHLIDLENGKTIWSKPNHGPS VVAGNVIVTVVDKNPDLRGSSLVGLASEDGRELWSDNSYGQDIKVGPNGGGIVVVSGAADNLYLRMVDPTDGAIKSVIDQ EGSLGRTQLGVDCLFDQKTSMVCSMDDRWLSVFDTSSQKWLWRLPDDSAGRVAPRVNFAWHGAVYGETRDGPVVIDAMTG KDREVNPGITAYHVNQYVGIGPDPQGSGVAAFRSVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46320; Mature: 46188
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRRRWLALSVVVLAFALIGCSSSPIPEPDDGGGEGVAATARTSHDPPLRFDSLSAITL CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEE PPEASDSRINLGGELRYPLPVVLHGMTAFVGAPERMLAVDTERGGDVLAVFAPDGEPLQR CCCCCCCEEECCCEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHH SGSSGWVGSNSAGAPVVGEVDGRPVVLAAFTTRHPGVGTQRSRRYAEVVEVDAGTLGRRW CCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCHHHHCEEEEEEECCCCCCCEE ITRIEISDEMSLYGGPVVAVVVGILPGRAVVEVSQDDRHDLHLIDLENGKTIWSKPNHGP EEEEEECCCCEECCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCEEECCCCCCC SVVAGNVIVTVVDKNPDLRGSSLVGLASEDGRELWSDNSYGQDIKVGPNGGGIVVVSGAA CEEECCEEEEEECCCCCCCCCEEEEECCCCCHHHHCCCCCCCEEEECCCCCCEEEEECCC DNLYLRMVDPTDGAIKSVIDQEGSLGRTQLGVDCLFDQKTSMVCSMDDRWLSVFDTSSQK CCEEEEEECCCCHHHHHHHHCCCCCCCEEECEEEEECCCCCEEEECCCCEEEEEECCCCC WLWRLPDDSAGRVAPRVNFAWHGAVYGETRDGPVVIDAMTGKDREVNPGITAYHVNQYVG EEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECEEEE IGPDPQGSGVAAFRSVG CCCCCCCCCEEEEECCC >Mature Secondary Structure SLRRRWLALSVVVLAFALIGCSSSPIPEPDDGGGEGVAATARTSHDPPLRFDSLSAITL CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEE PPEASDSRINLGGELRYPLPVVLHGMTAFVGAPERMLAVDTERGGDVLAVFAPDGEPLQR CCCCCCCEEECCCEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHH SGSSGWVGSNSAGAPVVGEVDGRPVVLAAFTTRHPGVGTQRSRRYAEVVEVDAGTLGRRW CCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCHHHHCEEEEEEECCCCCCCEE ITRIEISDEMSLYGGPVVAVVVGILPGRAVVEVSQDDRHDLHLIDLENGKTIWSKPNHGP EEEEEECCCCEECCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCEEECCCCCCC SVVAGNVIVTVVDKNPDLRGSSLVGLASEDGRELWSDNSYGQDIKVGPNGGGIVVVSGAA CEEECCEEEEEECCCCCCCCCEEEEECCCCCHHHHCCCCCCCEEEECCCCCCEEEEECCC DNLYLRMVDPTDGAIKSVIDQEGSLGRTQLGVDCLFDQKTSMVCSMDDRWLSVFDTSSQK CCEEEEEECCCCHHHHHHHHCCCCCCCEEECEEEEECCCCCEEEECCCCEEEEEECCCCC WLWRLPDDSAGRVAPRVNFAWHGAVYGETRDGPVVIDAMTGKDREVNPGITAYHVNQYVG EEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEECEEEE IGPDPQGSGVAAFRSVG CCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA