| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is tgs1 [H]
Identifier: 158317164
GI number: 158317164
Start: 6527763
End: 6529334
Strand: Direct
Name: tgs1 [H]
Synonym: Franean1_5411
Alternate gene names: 158317164
Gene position: 6527763-6529334 (Clockwise)
Preceding gene: 158317163
Following gene: 158317166
Centisome position: 72.68
GC content: 70.8
Gene sequence:
>1572_bases ATGACCGCTCGGCCGCTTACTCCGATGGACGCGCTCATACTCGGATACCAGCGAGCATTTCCGAAGACGCCGCTCGCGGT CGGTTGCCTGTTGGTCGCCGACGGCCCCGTGCCAGGAGTCCAGGCGTTGCGCGAGCTCGTCGCGGACCGGGCACACGACT TTCCTCCACTGGCCCACCGGATCGCCTCGGCCGGGCGTGGCCGGCCGGTCTGGGTGGCGGACGCCGATTTCGACCCGGCC CGGCACGTTCACGAGTACCGGCTCCCCGCGGAGTCGGGGCTCGCCGGACTGCGCGAGGCGGTGGGGCGGCTGTCAGCGGT CGAGATCTCGTTGGACGCGCCGCCGTGGCAGCTCTGGTTGCTCCACGGCCTCCGCCGCAACGGCTTCACCCTGCTGTACC GCGCCAGCCACGTGTGGACAGACGGGACGGCACTGAACCTGGTGCTGGAAAAGCTGTTCGGCCTGTCCGACCCAGGATCG GAGCGCGCACCTCTGCGGGTGTCGCCGGATCGCCGGCCCGGCCCCCGAACCGTCTGTCGGGCCGCCACTCACTCACTCGG ATGGCTTACCCGGACGTCCACGATCGGTCCGCTCTCGGCGGCACCCACGGGATACCCGCACCACACCTGGCTGGAGGTGG ACCTGTCCAGGCTACGGGCGATCAGCCGCGCCTACGAGGTCACCGTGAACGACATCTTCCTGGCCGCGCTCACCGGCGCT CTGCGTGCCTGGCCGCGCCCCGGCTCCGATCGGCCCGGCCAGCGCCGGGGCCAGATGCACGCCGCGATGCCGGTCAGTAC CCGCCGGGCAGCCCAGCGGGACCACATGAGCAACTACCTGACCACCGTACGGATCGCGCTGCCTTACGGTGAGTCGTTGA TCCACCGGCGTGTGGAGGCGATCCACCGGCAGACCGTCCGACACAAGCGGGGCGGGACTCCGGGCGTCGCGGAACATCTC TTCCTCTGGGCGATTCCCGAACCGTTGCGACCGGCCGTGCTGTCCACCGGGATCATGTCCCACGTCTTCGCGCTGACCGC ATCCAACCCGGGCGGCCTGACCGGCCCGCTGGAAATCCTCGGCCGACCAGTCACCGCCGCCGTGCCCACCCCTCCGCTCC CCGCAGGCCAACGCCTGGCAGTCCTGCTCGGCGGGCTGGACGGGCAGGCGTGCATCGGTTTCACGATGGACGGGTCGGTG CGGGACGGGGCGCGACTGCCGGAACTCGTCGAGGCCGAACTGGACGCGCTCGAGGCAGCGGCCGGCCTCCGCCACGGCCC GGCCCGGAGCCCGGCCGAGACCACGCATTCGGCACGGCCGCATCCGGTCGCCATGACCGGTATCGGCACCAGCGCTATCG AGGCGGCGGGTCTGGTGGGGCGCGGTGCTTATCACCTTCGTCGCTGGCTCACACGGGGCCAGCGGACCGACACGCCTGGC ACGGAACTGGTTCAGGGCACCAGCGACGCGGCAGGTCGAACGCCCTACAGTCAACTCTGCTCCCGACGGCTCCAGCAACC CCGGCCAGCCGGTGCTTCGCCAGCAGAGGAGAGGCGAGTACTACATTCCTAG
Upstream 100 bases:
>100_bases CAGCATGGCGTTCCGGACGTAACCGGTTTTCCAGTCCATCCAGGGAGCCAGTTGTGACAATTGCGCGGCGACTCGTCGAT GTTAACCGGGGCGCCAAGCT
Downstream 100 bases:
>100_bases ATCTTGGCTGGTTGGTTCGGGTTCAGGTGCGTAGAGCGAGGGGGATCGGGTCGCCGCGGCGCCGGTAGTGGCTGAGGAGC GCTCGGGTCTGGTGGGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: TGS1; Probable triacylglycerol synthase tgs1 [H]
Number of amino acids: Translated: 523; Mature: 522
Protein sequence:
>523_residues MTARPLTPMDALILGYQRAFPKTPLAVGCLLVADGPVPGVQALRELVADRAHDFPPLAHRIASAGRGRPVWVADADFDPA RHVHEYRLPAESGLAGLREAVGRLSAVEISLDAPPWQLWLLHGLRRNGFTLLYRASHVWTDGTALNLVLEKLFGLSDPGS ERAPLRVSPDRRPGPRTVCRAATHSLGWLTRTSTIGPLSAAPTGYPHHTWLEVDLSRLRAISRAYEVTVNDIFLAALTGA LRAWPRPGSDRPGQRRGQMHAAMPVSTRRAAQRDHMSNYLTTVRIALPYGESLIHRRVEAIHRQTVRHKRGGTPGVAEHL FLWAIPEPLRPAVLSTGIMSHVFALTASNPGGLTGPLEILGRPVTAAVPTPPLPAGQRLAVLLGGLDGQACIGFTMDGSV RDGARLPELVEAELDALEAAAGLRHGPARSPAETTHSARPHPVAMTGIGTSAIEAAGLVGRGAYHLRRWLTRGQRTDTPG TELVQGTSDAAGRTPYSQLCSRRLQQPRPAGASPAEERRVLHS
Sequences:
>Translated_523_residues MTARPLTPMDALILGYQRAFPKTPLAVGCLLVADGPVPGVQALRELVADRAHDFPPLAHRIASAGRGRPVWVADADFDPA RHVHEYRLPAESGLAGLREAVGRLSAVEISLDAPPWQLWLLHGLRRNGFTLLYRASHVWTDGTALNLVLEKLFGLSDPGS ERAPLRVSPDRRPGPRTVCRAATHSLGWLTRTSTIGPLSAAPTGYPHHTWLEVDLSRLRAISRAYEVTVNDIFLAALTGA LRAWPRPGSDRPGQRRGQMHAAMPVSTRRAAQRDHMSNYLTTVRIALPYGESLIHRRVEAIHRQTVRHKRGGTPGVAEHL FLWAIPEPLRPAVLSTGIMSHVFALTASNPGGLTGPLEILGRPVTAAVPTPPLPAGQRLAVLLGGLDGQACIGFTMDGSV RDGARLPELVEAELDALEAAAGLRHGPARSPAETTHSARPHPVAMTGIGTSAIEAAGLVGRGAYHLRRWLTRGQRTDTPG TELVQGTSDAAGRTPYSQLCSRRLQQPRPAGASPAEERRVLHS >Mature_522_residues TARPLTPMDALILGYQRAFPKTPLAVGCLLVADGPVPGVQALRELVADRAHDFPPLAHRIASAGRGRPVWVADADFDPAR HVHEYRLPAESGLAGLREAVGRLSAVEISLDAPPWQLWLLHGLRRNGFTLLYRASHVWTDGTALNLVLEKLFGLSDPGSE RAPLRVSPDRRPGPRTVCRAATHSLGWLTRTSTIGPLSAAPTGYPHHTWLEVDLSRLRAISRAYEVTVNDIFLAALTGAL RAWPRPGSDRPGQRRGQMHAAMPVSTRRAAQRDHMSNYLTTVRIALPYGESLIHRRVEAIHRQTVRHKRGGTPGVAEHLF LWAIPEPLRPAVLSTGIMSHVFALTASNPGGLTGPLEILGRPVTAAVPTPPLPAGQRLAVLLGGLDGQACIGFTMDGSVR DGARLPELVEAELDALEAAAGLRHGPARSPAETTHSARPHPVAMTGIGTSAIEAAGLVGRGAYHLRRWLTRGQRTDTPGT ELVQGTSDAAGRTPYSQLCSRRLQQPRPAGASPAEERRVLHS
Specific function: Upon expression in E.coli functions as a triacylglycerol synthase, making triacylglycerol (TG) from diolein and long-chain fatty acyl-CoA. Prefers C(26:0)-CoA over C(18:1)-CoA. TG synthesis activity increases in M.tuberculosis upon oxygen depletion and NO
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the long-chain O-acyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014292 - InterPro: IPR004255 [H]
Pfam domain/function: PF03007 UPF0089 [H]
EC number: =2.3.1.20 [H]
Molecular weight: Translated: 56310; Mature: 56179
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARPLTPMDALILGYQRAFPKTPLAVGCLLVADGPVPGVQALRELVADRAHDFPPLAHR CCCCCCCHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHH IASAGRGRPVWVADADFDPARHVHEYRLPAESGLAGLREAVGRLSAVEISLDAPPWQLWL HHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH LHGLRRNGFTLLYRASHVWTDGTALNLVLEKLFGLSDPGSERAPLRVSPDRRPGPRTVCR HHHHCCCCEEEEEEECEEECCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHH AATHSLGWLTRTSTIGPLSAAPTGYPHHTWLEVDLSRLRAISRAYEVTVNDIFLAALTGA HHHHHHHHEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAWPRPGSDRPGQRRGQMHAAMPVSTRRAAQRDHMSNYLTTVRIALPYGESLIHRRVEA HHCCCCCCCCCCCHHHCCEEECCCCHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHH IHRQTVRHKRGGTPGVAEHLFLWAIPEPLRPAVLSTGIMSHVFALTASNPGGLTGPLEIL HHHHHHHHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHH GRPVTAAVPTPPLPAGQRLAVLLGGLDGQACIGFTMDGSVRDGARLPELVEAELDALEAA CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH AGLRHGPARSPAETTHSARPHPVAMTGIGTSAIEAAGLVGRGAYHLRRWLTRGQRTDTPG HHCCCCCCCCCHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC TELVQGTSDAAGRTPYSQLCSRRLQQPRPAGASPAEERRVLHS HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure TARPLTPMDALILGYQRAFPKTPLAVGCLLVADGPVPGVQALRELVADRAHDFPPLAHR CCCCCCHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHH IASAGRGRPVWVADADFDPARHVHEYRLPAESGLAGLREAVGRLSAVEISLDAPPWQLWL HHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH LHGLRRNGFTLLYRASHVWTDGTALNLVLEKLFGLSDPGSERAPLRVSPDRRPGPRTVCR HHHHCCCCEEEEEEECEEECCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHH AATHSLGWLTRTSTIGPLSAAPTGYPHHTWLEVDLSRLRAISRAYEVTVNDIFLAALTGA HHHHHHHHEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAWPRPGSDRPGQRRGQMHAAMPVSTRRAAQRDHMSNYLTTVRIALPYGESLIHRRVEA HHCCCCCCCCCCCHHHCCEEECCCCHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHH IHRQTVRHKRGGTPGVAEHLFLWAIPEPLRPAVLSTGIMSHVFALTASNPGGLTGPLEIL HHHHHHHHHCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHH GRPVTAAVPTPPLPAGQRLAVLLGGLDGQACIGFTMDGSVRDGARLPELVEAELDALEAA CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH AGLRHGPARSPAETTHSARPHPVAMTGIGTSAIEAAGLVGRGAYHLRRWLTRGQRTDTPG HHCCCCCCCCCHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC TELVQGTSDAAGRTPYSQLCSRRLQQPRPAGASPAEERRVLHS HHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]