| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317148
Identifier: 158317148
GI number: 158317148
Start: 6506647
End: 6507678
Strand: Reverse
Name: 158317148
Synonym: Franean1_5394
Alternate gene names: NA
Gene position: 6507678-6506647 (Counterclockwise)
Preceding gene: 158317149
Following gene: 158317147
Centisome position: 72.45
GC content: 66.76
Gene sequence:
>1032_bases ATGTCCGGGCCCGTGGACAGCGCCGTGCCCAACAGCGTCACTGCTGCTGAACGTGTCAGTGTTCCTCAACGTGTCATCGG GCCTGAGCGTGCCACCGCAGCTGGATACGCCGCCGTGCGTGAAAGCCCCAGCGGACCTGGGTGCTCCAGTGGACCCGGTG TCGCCACCGCGCTCGATGGTCTGGATGACCTGGTCGACACCGACCGTTATCCTCTCGCGCATCCGGCGAGTGCAGCCTGG CACGACCTGGCGGCCAGAGTCCGTCGAGAGCTGGAGGCAACGGGTTGCAGCGTCCTCACTGAATTCGTTCGCCCCGATGC CCGTGAGACCCTGCGCGCCGAATGCACTGCGCTTGCTCCGTCGGCGTACTACCAGGCCGAGACGGTCAACGCATACAACA TTGACATGGGGACGCCGCTACCCGAAGATCATCCCGGGCGTATCGCCATGCGGCGCGGAAACGCGTTCGTCGCGGCCGAT CTCGTCCCCGGCGGTGTGGGCATACGGCGGTTGTATTCCAACGAGTCTTTTCGACGGTTCGTGGCAGCCTGCTGCGGGCT TGATCGCCTCTATGAGCTGGCGGACCCGCTGGCCCAGCTGTGCCTCAACGTCATCCGGCCCGGAGATGAGCACCCCTGGC ACTTCGACACCAACGAGTTCTCGCTGAGCCTGCTGATCCAGGAGCCGGAGGCAGGCGGGGTCTTCGAGTACTGTCCCGAC ATCCGGTCCACCGAGGCCGAGAACCTCGAGGCCGTGTGTGACGTCCTCACCGGTCGAGATGACCGGCGGACACAGCGCCT CACGCTCCGTCCCGGTGATCTCCAGCTGTTTCGAGGTCGCTTCTCCCTGCACCGGGTCAGCCCGGTGCAGGGGGGCACCG CCCGTCATTCGGCGATCTTCGCCTACTGCGAGCGCCCCGGTGTCATCGGTAGCGTTGCGCGCACGAGGCAGCTGTTCGGC CGGGTGCTGCCCGAACATCTCGAGGCCGCCGGCCAGGCGGCTCGCGTGCGGGGCGACAGCCTGCTCGACTGA
Upstream 100 bases:
>100_bases TACTGCAGCGCGCGGTGCGGCCTGCCCAGCTGGATCGGACAGCCTTCTGACCTGCGGCGATGATGCGGCGGGATCCACGG GCCAGGGCCTTCTGTCAGGT
Downstream 100 bases:
>100_bases GCCGGTGATTGAACCGGCGATCCGATCGCGCAGGCCGACCACGCCCGTGGCCCTCGACCCGCCGGCGCGGTGTCGGCGTG CTGATCGGCTGGTCCGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSGPVDSAVPNSVTAAERVSVPQRVIGPERATAAGYAAVRESPSGPGCSSGPGVATALDGLDDLVDTDRYPLAHPASAAW HDLAARVRRELEATGCSVLTEFVRPDARETLRAECTALAPSAYYQAETVNAYNIDMGTPLPEDHPGRIAMRRGNAFVAAD LVPGGVGIRRLYSNESFRRFVAACCGLDRLYELADPLAQLCLNVIRPGDEHPWHFDTNEFSLSLLIQEPEAGGVFEYCPD IRSTEAENLEAVCDVLTGRDDRRTQRLTLRPGDLQLFRGRFSLHRVSPVQGGTARHSAIFAYCERPGVIGSVARTRQLFG RVLPEHLEAAGQAARVRGDSLLD
Sequences:
>Translated_343_residues MSGPVDSAVPNSVTAAERVSVPQRVIGPERATAAGYAAVRESPSGPGCSSGPGVATALDGLDDLVDTDRYPLAHPASAAW HDLAARVRRELEATGCSVLTEFVRPDARETLRAECTALAPSAYYQAETVNAYNIDMGTPLPEDHPGRIAMRRGNAFVAAD LVPGGVGIRRLYSNESFRRFVAACCGLDRLYELADPLAQLCLNVIRPGDEHPWHFDTNEFSLSLLIQEPEAGGVFEYCPD IRSTEAENLEAVCDVLTGRDDRRTQRLTLRPGDLQLFRGRFSLHRVSPVQGGTARHSAIFAYCERPGVIGSVARTRQLFG RVLPEHLEAAGQAARVRGDSLLD >Mature_342_residues SGPVDSAVPNSVTAAERVSVPQRVIGPERATAAGYAAVRESPSGPGCSSGPGVATALDGLDDLVDTDRYPLAHPASAAWH DLAARVRRELEATGCSVLTEFVRPDARETLRAECTALAPSAYYQAETVNAYNIDMGTPLPEDHPGRIAMRRGNAFVAADL VPGGVGIRRLYSNESFRRFVAACCGLDRLYELADPLAQLCLNVIRPGDEHPWHFDTNEFSLSLLIQEPEAGGVFEYCPDI RSTEAENLEAVCDVLTGRDDRRTQRLTLRPGDLQLFRGRFSLHRVSPVQGGTARHSAIFAYCERPGVIGSVARTRQLFGR VLPEHLEAAGQAARVRGDSLLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37106; Mature: 36975
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGPVDSAVPNSVTAAERVSVPQRVIGPERATAAGYAAVRESPSGPGCSSGPGVATALDG CCCCCCCCCCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LDDLVDTDRYPLAHPASAAWHDLAARVRRELEATGCSVLTEFVRPDARETLRAECTALAP HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC SAYYQAETVNAYNIDMGTPLPEDHPGRIAMRRGNAFVAADLVPGGVGIRRLYSNESFRRF HHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHCCHHHHHH VAACCGLDRLYELADPLAQLCLNVIRPGDEHPWHFDTNEFSLSLLIQEPEAGGVFEYCPD HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHCCC IRSTEAENLEAVCDVLTGRDDRRTQRLTLRPGDLQLFRGRFSLHRVSPVQGGTARHSAIF CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHEECCCCCCCCCHHHHHE AYCERPGVIGSVARTRQLFGRVLPEHLEAAGQAARVRGDSLLD EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCC >Mature Secondary Structure SGPVDSAVPNSVTAAERVSVPQRVIGPERATAAGYAAVRESPSGPGCSSGPGVATALDG CCCCCCCCCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LDDLVDTDRYPLAHPASAAWHDLAARVRRELEATGCSVLTEFVRPDARETLRAECTALAP HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC SAYYQAETVNAYNIDMGTPLPEDHPGRIAMRRGNAFVAADLVPGGVGIRRLYSNESFRRF HHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHCCHHHHHH VAACCGLDRLYELADPLAQLCLNVIRPGDEHPWHFDTNEFSLSLLIQEPEAGGVFEYCPD HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHCCC IRSTEAENLEAVCDVLTGRDDRRTQRLTLRPGDLQLFRGRFSLHRVSPVQGGTARHSAIF CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCHHHEECCCCCCCCCHHHHHE AYCERPGVIGSVARTRQLFGRVLPEHLEAAGQAARVRGDSLLD EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA