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The map label for this gene is alkR [H]

Identifier: 158317132

GI number: 158317132

Start: 6483660

End: 6484709

Strand: Direct

Name: alkR [H]

Synonym: Franean1_5377

Alternate gene names: 158317132

Gene position: 6483660-6484709 (Clockwise)

Preceding gene: 158317127

Following gene: 158317133

Centisome position: 72.18

GC content: 65.9

Gene sequence:

>1050_bases
ATGCCCGTGCAGGTAGCGGACCAGGAAAACGATCTGCTGGGTGAGCTTCTACGTCCGATTCGTCTGACCGGAGTGTTCCA
GAGCCATTGGCTACTGAATTCTCCCTGGTCGATCGAGGGTGATTCTGAATCGGACTGCGTCGTACTCCACTACGTCATCG
AGGGCTCGTGCTGGATCGGCACCGAGGGGGCCCGGCCGGTCCTACTGCGAGAGGGGGACCTGGCGGTATTCCCCACCGGG
CGGTCGCACCGGGTCTCAGACCGCCCTGATCGGCGAGGCGTGCCGCTGCGGACCCTGCTCGCCGACCGCTCGCCGGGGAC
CTCGAGCCAGCTGGCTCTCGGTGGAGAGGGCGAGCAGACACGGATACTCTGCGCGGGCCTCTACTACGACGCCAACACCG
TGTCCTCCCTGTACCACGCGTTGCCGTGGATCCTCACGCTCGAGCGGGAGGCCGTGGAGGCGGAACTACTGCTGCGGGAC
ATCATCCACCAACTCGTCACGGACCGGGACGGCGGGCCCGGTGCGCGCCTGATCACCCTGCGGATCTTCGAGGTCTTCTT
CATTCTCAGTCTCCACCCACTGCTGCGCGGCATGATGGATCGTCCGGAGGTGCTCACCGCGCTGAAGGACCCGGCCATCA
GCAAAGCTCTGCTGGTCATGTACACGCGATTCGTCGAGCCCTGGACGATCGAGTCCCTGGCCCGGGAGGTCGGCATGTCT
CGATCGGCCTTCGCGGCCAGTTTCCGCGAGATCGTCGGCGAGAGCCCGTCCAGCCATCTCGTCCTCCGCCGGATGCGTGA
GTCCGCGCGCCTTCTCGCGGAAAGCGACATCCCGCTCGGCGCGATACCCCAGAAGGTCGGGTACAAAAGTGCGGTCGGCT
TCCACATCGCTTTCCGCAAGCGTTTCGGAATCACGCCCGGGGAATACCGTCAGCGCTTCCGGCGGGTGACCGGGAAGGCA
CCCACCGAGGACGGCGCGCGAGACGGCACCGTAAGATCCACGACGCTGGGACGGGAAGGCTCCGCACCGAGGGTTTCGAC
CGGGCTCTGA

Upstream 100 bases:

>100_bases
GGCTCGGATACTGATGTACCGCGGATGACCCGGTCGAACGCCCGGTGTTCCGCAGGTACCGTCCAATGGAGCGAGCCGCC
AGTACCGAGGGAGCGGGGAC

Downstream 100 bases:

>100_bases
GCGGTGCCCGTCATGCCGCGGGCGCGCGGGCCTCGTCCGTGAACCACGCCCGGCGGCGCCTGCTGGGAGGGCGCGGCGCC
GGCGTTGTCGCCATGGCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MPVQVADQENDLLGELLRPIRLTGVFQSHWLLNSPWSIEGDSESDCVVLHYVIEGSCWIGTEGARPVLLREGDLAVFPTG
RSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQTRILCAGLYYDANTVSSLYHALPWILTLEREAVEAELLLRD
IIHQLVTDRDGGPGARLITLRIFEVFFILSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMS
RSAFAASFREIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRKRFGITPGEYRQRFRRVTGKA
PTEDGARDGTVRSTTLGREGSAPRVSTGL

Sequences:

>Translated_349_residues
MPVQVADQENDLLGELLRPIRLTGVFQSHWLLNSPWSIEGDSESDCVVLHYVIEGSCWIGTEGARPVLLREGDLAVFPTG
RSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQTRILCAGLYYDANTVSSLYHALPWILTLEREAVEAELLLRD
IIHQLVTDRDGGPGARLITLRIFEVFFILSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMS
RSAFAASFREIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRKRFGITPGEYRQRFRRVTGKA
PTEDGARDGTVRSTTLGREGSAPRVSTGL
>Mature_348_residues
PVQVADQENDLLGELLRPIRLTGVFQSHWLLNSPWSIEGDSESDCVVLHYVIEGSCWIGTEGARPVLLREGDLAVFPTGR
SHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQTRILCAGLYYDANTVSSLYHALPWILTLEREAVEAELLLRDI
IHQLVTDRDGGPGARLITLRIFEVFFILSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMSR
SAFAASFREIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRKRFGITPGEYRQRFRRVTGKAP
TEDGARDGTVRSTTLGREGSAPRVSTGL

Specific function: This protein activates the expression of the alkane 1- monooxygenase AlkM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=309, Percent_Identity=26.2135922330097, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI87082197, Length=107, Percent_Identity=32.7102803738318, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38665; Mature: 38534

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVQVADQENDLLGELLRPIRLTGVFQSHWLLNSPWSIEGDSESDCVVLHYVIEGSCWIG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEECCCEEEC
TEGARPVLLREGDLAVFPTGRSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQT
CCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCE
RILCAGLYYDANTVSSLYHALPWILTLEREAVEAELLLRDIIHQLVTDRDGGPGARLITL
EEEEEEEEECHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH
RIFEVFFILSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
RSAFAASFREIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHEEEEEHH
RFGITPGEYRQRFRRVTGKAPTEDGARDGTVRSTTLGREGSAPRVSTGL
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PVQVADQENDLLGELLRPIRLTGVFQSHWLLNSPWSIEGDSESDCVVLHYVIEGSCWIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEECCCEEEC
TEGARPVLLREGDLAVFPTGRSHRVSDRPDRRGVPLRTLLADRSPGTSSQLALGGEGEQT
CCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCE
RILCAGLYYDANTVSSLYHALPWILTLEREAVEAELLLRDIIHQLVTDRDGGPGARLITL
EEEEEEEEECHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH
RIFEVFFILSLHPLLRGMMDRPEVLTALKDPAISKALLVMYTRFVEPWTIESLAREVGMS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
RSAFAASFREIVGESPSSHLVLRRMRESARLLAESDIPLGAIPQKVGYKSAVGFHIAFRK
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHEEEEEHH
RFGITPGEYRQRFRRVTGKAPTEDGARDGTVRSTTLGREGSAPRVSTGL
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]