| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316997
Identifier: 158316997
GI number: 158316997
Start: 6300110
End: 6302635
Strand: Reverse
Name: 158316997
Synonym: Franean1_5241
Alternate gene names: NA
Gene position: 6302635-6300110 (Counterclockwise)
Preceding gene: 158316998
Following gene: 158316996
Centisome position: 70.17
GC content: 72.88
Gene sequence:
>2526_bases ATGGGTTCGGGATCGTTCGGGGGCCGTCCACGGCCACGTTTTGCCTTGTCTCGCCGGTCGCGCGTAGCGGCGGTATTCGC CGGTCTCCTGGTGGTGGCCGGCTTACTGGCGACCGGTATCGCAGGTCCCGCGGCCGCCGCGGCGGGGCGGCCGCCGGCCG GCGCCGGTTCGGCCGCGTCCGTCGGTCCGGCTGCCATGCGTGCCGTGATCCTCGTAGACGAGTCCGGCAGCCTGGACGAC GATGCGGTGCGGCGTGAGAAAGAAGCCGCCCAGCTGCTCGCGTTCAGTTCGCTGACCCCCGATTCGGAAATTGCGGTGGT GGGTTTCGGCAGCTCGAACGGCGAAGCCGGGCAGCATGCGGTCGAGGTTTACTGCCCGCTGACGAAGGCGGAGCCTGCGA AACAGCAGTTCTTCGTCGACTGCATCGACCGCCTGCACCGCCGTGTGCCGTCCGAGGGCGCCGACACCGACCACGCCGCG GCCATGACCCAGGCGCTGAGCATCCTCGGGCGGGCGCAGGAGGGCCGGCCCTCCTTCATCTTCCTGCTCACCGACGGCCG GCTCGACGTGGCGAACAGTCCGCAGTACGGCCAGCCGGGGGCACGCAACACCGAGGCGCAGCGCCGGGTCGACAGCCAGG TTGCGGCCGCCCGGAGCAACGGCGTCCAGATCTGGCCGCTCGGCTTCGGTGACGCCGACCAGGCCGCGCTTGACCGGTTC GCCGCCGGCGGTGCCCAGCAGACCTGCAACAACCTGCCAGACAACCAGCCGAAGGCGCGGGTGGTGACCTCGCCGGACGT CGTGGCGCGCTCGCTGTTCGAGGCGATCGGCAGCGCCAGCTGCGCCCAGACCACCGAGTTCGACACCGGCAAGCTCTCGC CAGGGTCGCCGGTCGAGCTGACCGTCTCCATCCCGGAGATCAGCACCGACGGGGTCATCGCCGTCATCAAGGGCGACCCG CGGGTGGAGGTCAGCTACGTCGACCCCAACGGGAAGGAGGTCGGCGACACCAGGGAGTTCGACGGCTCGATCTTCACCCG GAGCACCGCCAACGGCACGGTCGAGTCGCTGCGGGTGCAGAACCCCAGGCCGGGCACCTGGAAGATCCGGCTCACGGCCC CGGCCGACGTGCCGCCCGGCCAGATCGTCGGCGCCGCCGCGATGTGGCAGGGCGTGCTCCAAGCGGTGGTCGGCCTCAAC CCGCCGGTGCCGCAGCCCGGGCAGCAGGCCGTCGTCAGCGTCCAGTTGCAGACCCGCGACGGCGCGATCGACGACCCCGG CACCCTGGACGGCATCCAGTTCGGCGTGCGGATGTCCGGCGACAGCATCGAACAGCAGACCGTGCGGCTGACCAACGACG GCCGCGAGGGCGACGCCGTGGCTGGCGACGCCGAGTACAGCGGGCACATCACCGTCCCGCCGGACGCCAAGGGCGCGCTG ACCTTCGTCGGCACGATCGACGGGCCGGGTGTCGTCGGCGCGTCCACCGTCTACACGACGGTGGTGGCGGCCCAGGCCAG CCCGATCACCGCGTCGCTGCAGCTCGGCCGCGGCCACGTGGCGCCCGGCGGCAGCCTGACCGGCTCGGTCGTGGTGGACA ACACCGACGGGCAGGCCCGCACCCTCTCGCTCCAGCTGCGCAACCTCAGCAACGGGGCGCGCGCGACGATCGACCCGGCG ACGATCGCCAGCCAGCAGCGCGGCCGCGGCGAGCACCGGCTCACCGTCACCTTCGGCGAGGACACCGCGCTGGGCGCCAC CAGCGGGACGGTGATCCTGGTCGACGCCGCCAACCCGTCCACCGTGCTCGCGTGGTCCCGCCTCAACGCGGACGTCGGCC GTCCCGCGTCGTTGCTGGAGCGGTTCTGGTGGCTGTGGGTGCTGGCCCTGGCGGTGGTGCTCGCGCTGCTGCTGCTCGCC GCCTGGCTGCGCCAGACCGACCGCAGGGTCCGCGACGTCAGTGACGTCACCGTGTACCTGAGCCGCGGCGGTCAGCCGAT GGGGCACCTGCAGGCCCGGTCGGACACCGGCAGCCGATTCCCCTTCGTGGTGCTCGACGCGACCGGCGTCGCCCCGCATC TCGACCATTCGTACGGAGGCGGCGGTGGGTACGCCGTGACCCGCAACCGGCACCGGGTCCTGCAGCTGAGGACCCCGGAC GGGACGACGCGCGACATCTCGGCGGGGATGCCGGTGGAGATCGAGGCCGGCCTCGCGCTGACCATGACCGCCGCCGTGCG GGACAACCAGCCCTTCTCGACCGTCCCGGGCAGCGACGACCTGTACGAGCGGGCCGGTGATCACCGCGGGAGCGCTGACT CGTGGGCCGGCCACGGCGCGGGCCGCGCCTCCGCGCCCGCCGGCTCATATGACCCGGTGTCGGGGGCCGACCAGTCCGAG GTGACGACCTGGATCCCCGGCGGCCCGTCGCAGCGCCCCGCACCGAGCGGCTTCAACCCGCCCGCGAGCCCGGAGCCGCC GCCCGGCGGCGGCCGCTCGCCCCGTAACGACGACCTGTTCGACTGA
Upstream 100 bases:
>100_bases TTGTGCCGCGAAAGGCGTGCGGTCCGCGGCGGCCTGAGGTGTTGCTGCCGTCGCCGGCCGGATGTCAGCCTGAACGTGGC TTGGGGGGAGTCGTGTCAGC
Downstream 100 bases:
>100_bases TCCGGATAGCGAGCCATGAACATTTACCAGCCCATGCTGTTCGTCGGACTGGGCGGAACAGGCTGCCTGGTCGGCGCCGA GCTCGAGCGCCGGCTGCGGC
Product: von Willebrand factor type A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 841; Mature: 840
Protein sequence:
>841_residues MGSGSFGGRPRPRFALSRRSRVAAVFAGLLVVAGLLATGIAGPAAAAAGRPPAGAGSAASVGPAAMRAVILVDESGSLDD DAVRREKEAAQLLAFSSLTPDSEIAVVGFGSSNGEAGQHAVEVYCPLTKAEPAKQQFFVDCIDRLHRRVPSEGADTDHAA AMTQALSILGRAQEGRPSFIFLLTDGRLDVANSPQYGQPGARNTEAQRRVDSQVAAARSNGVQIWPLGFGDADQAALDRF AAGGAQQTCNNLPDNQPKARVVTSPDVVARSLFEAIGSASCAQTTEFDTGKLSPGSPVELTVSIPEISTDGVIAVIKGDP RVEVSYVDPNGKEVGDTREFDGSIFTRSTANGTVESLRVQNPRPGTWKIRLTAPADVPPGQIVGAAAMWQGVLQAVVGLN PPVPQPGQQAVVSVQLQTRDGAIDDPGTLDGIQFGVRMSGDSIEQQTVRLTNDGREGDAVAGDAEYSGHITVPPDAKGAL TFVGTIDGPGVVGASTVYTTVVAAQASPITASLQLGRGHVAPGGSLTGSVVVDNTDGQARTLSLQLRNLSNGARATIDPA TIASQQRGRGEHRLTVTFGEDTALGATSGTVILVDAANPSTVLAWSRLNADVGRPASLLERFWWLWVLALAVVLALLLLA AWLRQTDRRVRDVSDVTVYLSRGGQPMGHLQARSDTGSRFPFVVLDATGVAPHLDHSYGGGGGYAVTRNRHRVLQLRTPD GTTRDISAGMPVEIEAGLALTMTAAVRDNQPFSTVPGSDDLYERAGDHRGSADSWAGHGAGRASAPAGSYDPVSGADQSE VTTWIPGGPSQRPAPSGFNPPASPEPPPGGGRSPRNDDLFD
Sequences:
>Translated_841_residues MGSGSFGGRPRPRFALSRRSRVAAVFAGLLVVAGLLATGIAGPAAAAAGRPPAGAGSAASVGPAAMRAVILVDESGSLDD DAVRREKEAAQLLAFSSLTPDSEIAVVGFGSSNGEAGQHAVEVYCPLTKAEPAKQQFFVDCIDRLHRRVPSEGADTDHAA AMTQALSILGRAQEGRPSFIFLLTDGRLDVANSPQYGQPGARNTEAQRRVDSQVAAARSNGVQIWPLGFGDADQAALDRF AAGGAQQTCNNLPDNQPKARVVTSPDVVARSLFEAIGSASCAQTTEFDTGKLSPGSPVELTVSIPEISTDGVIAVIKGDP RVEVSYVDPNGKEVGDTREFDGSIFTRSTANGTVESLRVQNPRPGTWKIRLTAPADVPPGQIVGAAAMWQGVLQAVVGLN PPVPQPGQQAVVSVQLQTRDGAIDDPGTLDGIQFGVRMSGDSIEQQTVRLTNDGREGDAVAGDAEYSGHITVPPDAKGAL TFVGTIDGPGVVGASTVYTTVVAAQASPITASLQLGRGHVAPGGSLTGSVVVDNTDGQARTLSLQLRNLSNGARATIDPA TIASQQRGRGEHRLTVTFGEDTALGATSGTVILVDAANPSTVLAWSRLNADVGRPASLLERFWWLWVLALAVVLALLLLA AWLRQTDRRVRDVSDVTVYLSRGGQPMGHLQARSDTGSRFPFVVLDATGVAPHLDHSYGGGGGYAVTRNRHRVLQLRTPD GTTRDISAGMPVEIEAGLALTMTAAVRDNQPFSTVPGSDDLYERAGDHRGSADSWAGHGAGRASAPAGSYDPVSGADQSE VTTWIPGGPSQRPAPSGFNPPASPEPPPGGGRSPRNDDLFD >Mature_840_residues GSGSFGGRPRPRFALSRRSRVAAVFAGLLVVAGLLATGIAGPAAAAAGRPPAGAGSAASVGPAAMRAVILVDESGSLDDD AVRREKEAAQLLAFSSLTPDSEIAVVGFGSSNGEAGQHAVEVYCPLTKAEPAKQQFFVDCIDRLHRRVPSEGADTDHAAA MTQALSILGRAQEGRPSFIFLLTDGRLDVANSPQYGQPGARNTEAQRRVDSQVAAARSNGVQIWPLGFGDADQAALDRFA AGGAQQTCNNLPDNQPKARVVTSPDVVARSLFEAIGSASCAQTTEFDTGKLSPGSPVELTVSIPEISTDGVIAVIKGDPR VEVSYVDPNGKEVGDTREFDGSIFTRSTANGTVESLRVQNPRPGTWKIRLTAPADVPPGQIVGAAAMWQGVLQAVVGLNP PVPQPGQQAVVSVQLQTRDGAIDDPGTLDGIQFGVRMSGDSIEQQTVRLTNDGREGDAVAGDAEYSGHITVPPDAKGALT FVGTIDGPGVVGASTVYTTVVAAQASPITASLQLGRGHVAPGGSLTGSVVVDNTDGQARTLSLQLRNLSNGARATIDPAT IASQQRGRGEHRLTVTFGEDTALGATSGTVILVDAANPSTVLAWSRLNADVGRPASLLERFWWLWVLALAVVLALLLLAA WLRQTDRRVRDVSDVTVYLSRGGQPMGHLQARSDTGSRFPFVVLDATGVAPHLDHSYGGGGGYAVTRNRHRVLQLRTPDG TTRDISAGMPVEIEAGLALTMTAAVRDNQPFSTVPGSDDLYERAGDHRGSADSWAGHGAGRASAPAGSYDPVSGADQSEV TTWIPGGPSQRPAPSGFNPPASPEPPPGGGRSPRNDDLFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87248; Mature: 87117
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSGSFGGRPRPRFALSRRSRVAAVFAGLLVVAGLLATGIAGPAAAAAGRPPAGAGSAAS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCC VGPAAMRAVILVDESGSLDDDAVRREKEAAQLLAFSSLTPDSEIAVVGFGSSNGEAGQHA CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEE VEVYCPLTKAEPAKQQFFVDCIDRLHRRVPSEGADTDHAAAMTQALSILGRAQEGRPSFI EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE FLLTDGRLDVANSPQYGQPGARNTEAQRRVDSQVAAARSNGVQIWPLGFGDADQAALDRF EEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH AAGGAQQTCNNLPDNQPKARVVTSPDVVARSLFEAIGSASCAQTTEFDTGKLSPGSPVEL HCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE TVSIPEISTDGVIAVIKGDPRVEVSYVDPNGKEVGDTREFDGSIFTRSTANGTVESLRVQ EEECCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEC NPRPGTWKIRLTAPADVPPGQIVGAAAMWQGVLQAVVGLNPPVPQPGQQAVVSVQLQTRD CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECC GAIDDPGTLDGIQFGVRMSGDSIEQQTVRLTNDGREGDAVAGDAEYSGHITVPPDAKGAL CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCEECCCCCCCEEECCCCCCCCE TFVGTIDGPGVVGASTVYTTVVAAQASPITASLQLGRGHVAPGGSLTGSVVVDNTDGQAR EEEEECCCCCCCCCHHHHHHHHECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEE TLSLQLRNLSNGARATIDPATIASQQRGRGEHRLTVTFGEDTALGATSGTVILVDAANPS EEEEEEECCCCCCCEEECHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCC TVLAWSRLNADVGRPASLLERFWWLWVLALAVVLALLLLAAWLRQTDRRVRDVSDVTVYL EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE SRGGQPMGHLQARSDTGSRFPFVVLDATGVAPHLDHSYGGGGGYAVTRNRHRVLQLRTPD ECCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCC GTTRDISAGMPVEIEAGLALTMTAAVRDNQPFSTVPGSDDLYERAGDHRGSADSWAGHGA CCCCCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC GRASAPAGSYDPVSGADQSEVTTWIPGGPSQRPAPSGFNPPASPEPPPGGGRSPRNDDLF CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC D C >Mature Secondary Structure GSGSFGGRPRPRFALSRRSRVAAVFAGLLVVAGLLATGIAGPAAAAAGRPPAGAGSAAS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCC VGPAAMRAVILVDESGSLDDDAVRREKEAAQLLAFSSLTPDSEIAVVGFGSSNGEAGQHA CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEE VEVYCPLTKAEPAKQQFFVDCIDRLHRRVPSEGADTDHAAAMTQALSILGRAQEGRPSFI EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE FLLTDGRLDVANSPQYGQPGARNTEAQRRVDSQVAAARSNGVQIWPLGFGDADQAALDRF EEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH AAGGAQQTCNNLPDNQPKARVVTSPDVVARSLFEAIGSASCAQTTEFDTGKLSPGSPVEL HCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE TVSIPEISTDGVIAVIKGDPRVEVSYVDPNGKEVGDTREFDGSIFTRSTANGTVESLRVQ EEECCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEC NPRPGTWKIRLTAPADVPPGQIVGAAAMWQGVLQAVVGLNPPVPQPGQQAVVSVQLQTRD CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECC GAIDDPGTLDGIQFGVRMSGDSIEQQTVRLTNDGREGDAVAGDAEYSGHITVPPDAKGAL CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCEECCCCCCCEEECCCCCCCCE TFVGTIDGPGVVGASTVYTTVVAAQASPITASLQLGRGHVAPGGSLTGSVVVDNTDGQAR EEEEECCCCCCCCCHHHHHHHHECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEE TLSLQLRNLSNGARATIDPATIASQQRGRGEHRLTVTFGEDTALGATSGTVILVDAANPS EEEEEEECCCCCCCEEECHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCC TVLAWSRLNADVGRPASLLERFWWLWVLALAVVLALLLLAAWLRQTDRRVRDVSDVTVYL EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE SRGGQPMGHLQARSDTGSRFPFVVLDATGVAPHLDHSYGGGGGYAVTRNRHRVLQLRTPD ECCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCC GTTRDISAGMPVEIEAGLALTMTAAVRDNQPFSTVPGSDDLYERAGDHRGSADSWAGHGA CCCCCCCCCCCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC GRASAPAGSYDPVSGADQSEVTTWIPGGPSQRPAPSGFNPPASPEPPPGGGRSPRNDDLF CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC D C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA