| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316973
Identifier: 158316973
GI number: 158316973
Start: 6262963
End: 6264132
Strand: Reverse
Name: 158316973
Synonym: Franean1_5217
Alternate gene names: NA
Gene position: 6264132-6262963 (Counterclockwise)
Preceding gene: 158316974
Following gene: 158316970
Centisome position: 69.74
GC content: 59.15
Gene sequence:
>1170_bases ATGTCGCTTTCCGTGAACACCAAGAAGTGCTTTGTCGTCATGCCGTTCGGTGAGAAGGCGGGGCCAGACGGTTCGTTAAT CGATTTCGACAACGTCTACCGGGACGTCATCAGGGAGCCGGTCGAGTCGCTGGGCTTCAAGGTGGTGAGGGCCGACGAGA TCGAGCGGCCCGGCTCGATCCACAGCGACATGTTCCGGCACATCGCGATGGACGATCTGGCGATCGTGGACATCACGACG GGAAACCCCAACGTCCTCTACGAGCTTGGCGTTCGACATGCCCTGAGGCCGTCATTGACGATCATAATCAAGCGGCGTGG CACAAAAATTCCCTTCAATTTTGCGGGAGAGCGTGTCATCGACTATCCGAGCGTAAGGGGCAGCTACGCGGACAGTCGAG AGGAGATTCGAAGGTACATTGAGAACGGGCTGAAGAAAAGTGAGACAGACAGTCCGATCTTCAATTTTCTGCAGGATGCC AGGAAGGATTGGAAGCGGGAGCGGATTACTTCGCGAGATGAATACCGCTATCGGACCGTGAGCTCGCCGAAGAAGAAGAT CAGTGTGATCACCGGTGACATTCGTGACTGGCGTGGTATCGATGTCTGGGTGAACTCGGAGAACACCAACATGCAGATGG CGCGGTTCTTCGACCGTTCGCTGTCTGCGATGATCCGATATGAGGGCGCGGTCAAGGACGCGAGCGATGAAGTTGTCGAG GACACGATCGCCGGCGAGCTGACCGCGCTCCTCGGAGGTCGGGAGACGGTGACCGCGGGTGCGGTGTACGTCACCGGCTC GGGTGCTCTCGCCGCAACCCGTGGCGTGAAGAAAATCTTCCACGCGGCGAGCACCCAGGGCGTTCCGGGGAGCGGATACC AGATGATTCAGAATGTCGAGAGATGTGTGACCGCATCGATGCGGCGTATCGACGAGCAGTTCGCTGACGCAGGACTGAGG AGCATCGTCTTCCCGATGATGGGAACAGGGGAGGGTGGCGGCGACGTCTACGCCACCGCACCGCGTCTGATACAGACGGC CGTTGCCTATCTGGCCTTCAACCCAGACAGTGTTGTCGAGAAGGTCTACTTCTCGGCTTGGAACCGCCGTGACCTCGAGG CCTGCCTGAACGCCCTGACGGATGCGGTCGAGGTGGAGCCCATCGGCTGA
Upstream 100 bases:
>100_bases ACGTACCGATGCTGCTTGCTGGTGGTGACGTTCTCGATGCAAAGACAATCATAGGTCTGTCGTGGCTCGCGGGCTCGCCT GCTGTTGGAAGGAACGGCTA
Downstream 100 bases:
>100_bases ACTAGTAGTCGCCGGCCTTGATCCTCTCCCAGGCGTCGAGGGCCGCGCCGCGGTAGTCCAGCGTGGGAATCCCCGCCCTC GCGCACCACTCGTGCACGGC
Product: appr-1-p processing domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MSLSVNTKKCFVVMPFGEKAGPDGSLIDFDNVYRDVIREPVESLGFKVVRADEIERPGSIHSDMFRHIAMDDLAIVDITT GNPNVLYELGVRHALRPSLTIIIKRRGTKIPFNFAGERVIDYPSVRGSYADSREEIRRYIENGLKKSETDSPIFNFLQDA RKDWKRERITSRDEYRYRTVSSPKKKISVITGDIRDWRGIDVWVNSENTNMQMARFFDRSLSAMIRYEGAVKDASDEVVE DTIAGELTALLGGRETVTAGAVYVTGSGALAATRGVKKIFHAASTQGVPGSGYQMIQNVERCVTASMRRIDEQFADAGLR SIVFPMMGTGEGGGDVYATAPRLIQTAVAYLAFNPDSVVEKVYFSAWNRRDLEACLNALTDAVEVEPIG
Sequences:
>Translated_389_residues MSLSVNTKKCFVVMPFGEKAGPDGSLIDFDNVYRDVIREPVESLGFKVVRADEIERPGSIHSDMFRHIAMDDLAIVDITT GNPNVLYELGVRHALRPSLTIIIKRRGTKIPFNFAGERVIDYPSVRGSYADSREEIRRYIENGLKKSETDSPIFNFLQDA RKDWKRERITSRDEYRYRTVSSPKKKISVITGDIRDWRGIDVWVNSENTNMQMARFFDRSLSAMIRYEGAVKDASDEVVE DTIAGELTALLGGRETVTAGAVYVTGSGALAATRGVKKIFHAASTQGVPGSGYQMIQNVERCVTASMRRIDEQFADAGLR SIVFPMMGTGEGGGDVYATAPRLIQTAVAYLAFNPDSVVEKVYFSAWNRRDLEACLNALTDAVEVEPIG >Mature_388_residues SLSVNTKKCFVVMPFGEKAGPDGSLIDFDNVYRDVIREPVESLGFKVVRADEIERPGSIHSDMFRHIAMDDLAIVDITTG NPNVLYELGVRHALRPSLTIIIKRRGTKIPFNFAGERVIDYPSVRGSYADSREEIRRYIENGLKKSETDSPIFNFLQDAR KDWKRERITSRDEYRYRTVSSPKKKISVITGDIRDWRGIDVWVNSENTNMQMARFFDRSLSAMIRYEGAVKDASDEVVED TIAGELTALLGGRETVTAGAVYVTGSGALAATRGVKKIFHAASTQGVPGSGYQMIQNVERCVTASMRRIDEQFADAGLRS IVFPMMGTGEGGGDVYATAPRLIQTAVAYLAFNPDSVVEKVYFSAWNRRDLEACLNALTDAVEVEPIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43265; Mature: 43133
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS51154 MACRO
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSVNTKKCFVVMPFGEKAGPDGSLIDFDNVYRDVIREPVESLGFKVVRADEIERPGSI CCCCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCH HSDMFRHIAMDDLAIVDITTGNPNVLYELGVRHALRPSLTIIIKRRGTKIPFNFAGERVI HHHHHHHHHHCCEEEEEEECCCCCEEEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEE DYPSVRGSYADSREEIRRYIENGLKKSETDSPIFNFLQDARKDWKRERITSRDEYRYRTV CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEECC SSPKKKISVITGDIRDWRGIDVWVNSENTNMQMARFFDRSLSAMIRYEGAVKDASDEVVE CCCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH DTIAGELTALLGGRETVTAGAVYVTGSGALAATRGVKKIFHAASTQGVPGSGYQMIQNVE HHHHHHHHHHHCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH RCVTASMRRIDEQFADAGLRSIVFPMMGTGEGGGDVYATAPRLIQTAVAYLAFNPDSVVE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHCCCHHHHHH KVYFSAWNRRDLEACLNALTDAVEVEPIG HHHHHHCCCCCHHHHHHHHHHCCEECCCC >Mature Secondary Structure SLSVNTKKCFVVMPFGEKAGPDGSLIDFDNVYRDVIREPVESLGFKVVRADEIERPGSI CCCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCH HSDMFRHIAMDDLAIVDITTGNPNVLYELGVRHALRPSLTIIIKRRGTKIPFNFAGERVI HHHHHHHHHHCCEEEEEEECCCCCEEEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEE DYPSVRGSYADSREEIRRYIENGLKKSETDSPIFNFLQDARKDWKRERITSRDEYRYRTV CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEECC SSPKKKISVITGDIRDWRGIDVWVNSENTNMQMARFFDRSLSAMIRYEGAVKDASDEVVE CCCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH DTIAGELTALLGGRETVTAGAVYVTGSGALAATRGVKKIFHAASTQGVPGSGYQMIQNVE HHHHHHHHHHHCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH RCVTASMRRIDEQFADAGLRSIVFPMMGTGEGGGDVYATAPRLIQTAVAYLAFNPDSVVE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHCCCHHHHHH KVYFSAWNRRDLEACLNALTDAVEVEPIG HHHHHHCCCCCHHHHHHHHHHCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA