| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316891
Identifier: 158316891
GI number: 158316891
Start: 6151638
End: 6153506
Strand: Reverse
Name: 158316891
Synonym: Franean1_5135
Alternate gene names: NA
Gene position: 6153506-6151638 (Counterclockwise)
Preceding gene: 158316893
Following gene: 158316889
Centisome position: 68.51
GC content: 74.85
Gene sequence:
>1869_bases GTGGCGCCGCGGTGCGCGGCGTCGTCGTCCGGCTGGCGCACCACCATAGAGTCTGATGTCGTGAGAGTCGGACCCCTGCC TCAGAGCTCCAGCGGGCAAGGCCCCAGCGGACGAGGCCCCCGCGCGCGCGGCGAGGCCCGGCCCCTGCGGGCATGGCAAC GCGCAGCCCTGGAGACCTACCGGTCGCGCAGCGCGTCCGGCGGCCGCGACTTCCTGGCCGTCGCGACCCCGGGCGCCGGC AAGACGACGTTCGCGCTGGAGATCGCCGCCGACCTGTTGGCCGCGGGCGAGGTGCGTTCGGTGACCGTGGTCGCCCCGAC CGAGCACCTCAAGCGGCAGTGGGCCAACGCCGCCTCCGCGGTCGGGGTCGACCTGGACCCGACCTTCCGCAACTCGGCCG GCGCCACCGCGTCGGACTACACCGGGGTCGCGGTCACCTACGCCCAGGTCGCCGCGCACCCCGCCCTGCACCGCATGCGC ACGGCCGCGCGCCGCACGCTGGTGATCCTCGACGAGATCCACCACGCGGGCGACGCCCTGTCCTGGGGCGAGGCGGTCCG GGAGGCGTTCGAGCCGGCCGCCCGCCGGCTCGCACTCACCGGAACCCCGTTCCGGTCCGACGTCAACCCGATCCCGTTCG TGACCTACCTGCCCGACGCCGAGGGCGTGACGCGCAGCGTCGCGGACTCCTCCTACGGTTACGCCGAGGCGCTGCGTGAC GGTGTGGTCCGTCCCGTGCTCTTCCTCGCCTACTCGGGTGAGATGTCCTGGCGCACCAGCGCCGGCGCGGAGCTCAGCGC CCGGCTCGGTGAGCCGCTGAACAGCGAGCAGACCGCGGCAGCGTGGCGCACGGCCCTCGACCCCCGCGGAGACTGGATGC CCGCGGTCCTGGCCGCCGCCGACACCCGGCTCTCCCAGGTGCGCCGGGGCGGGATGCCGGATGCCGGAGGCCTGGTCATC GCGACCGACCACACCAACGCCCGCGCCTACGCCGGCCTGCTGCGGCGGATCACCGGCGCGTCTCCCGTGATCGTCCTCTC CGACGACCCGACCGCCAGCACGAAGATCGCCACGTTCCGTGAGTCGACGGACCGGTGGATGGTCGCCGTCCGCATGGTCA GTGAGGGCGTGGACGTCCCCCGCCTGGCGGTCGGCGTGTACGCCACCTCGGCCTCGACGCCGCTGTACTTCGCCCAGGCC GTCGGCCGGTTCGTCCGTGGCCGCGGACGCTCGGAGACGGCGTCGGTGTTCCTGCCCAGCGTCCCGTCGCTGCTGGCGCT GGCCGGCGAGATGGAGGTCCAGCGCGACCACGCGCTCGACAAGCCGCAGCGCGAGCCCGACGCGTTCGACGACGACGCGC TGCGCGAGGCCAACCGCCGCCGTGACACCCCCGACAAGCCCGACACCCTGTTCACCGCGCTCGGCTCCTCCGCCCAACTC GACCGGGTGATCTTCGACGGCGGCGAGTTCGGCACGCCGGCCGCCTCCGGCTCCCTCGAGGAGGAGGACTTCCTGGGTCT GCCGGGCCTGCTCGAGCCCGACCAGGTCGCGACCCTGCTGCGCCAGCGCCAGGCGGCGCAGCAGGCCGCCGCGGCGAAGG CGCAGTCCGCGGCCGGCGAACCCGTGGTGCCGGCCGCCCGGCAGGGGGAGGCGGGCACCGACCCGGGCGACCGGCCCGTC CACGAGCAGATCGGTGACCTGCGGCGCGAGCTGAACAAGCTTGTCGCCGCGCACTACCATCGCACCGGAAAGCCGCACGG GATGATCCACGCCGAGCTGCGCCGCTCCTGCGGCGGCCCGCCGAGCGCCCAGGCCAGCACGGCCCAGCTCCAGGCCCGGA TCGACACGATGCGCCGCTGGGCCGGCTGA
Upstream 100 bases:
>100_bases CCTGAGTTAGCAAAGACGGTGATACCCCCTGTGTGGTCCTTCGGTGACAAGAAAGCGACAAATCATGGCACCGGTTGAGC TGCCCACAGGGAGTGGCCGG
Downstream 100 bases:
>100_bases GCCGCCCCGCCGACCCCGGTCAGACCCAGCCCGGCGGACCCCCGTCGGCCTCGTCCAGCGCGCCGGTCCTCGTCCGTCCA GGTTGTCCGCCGCCCCGTCC
Product: type III restriction protein res subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 622; Mature: 621
Protein sequence:
>622_residues MAPRCAASSSGWRTTIESDVVRVGPLPQSSSGQGPSGRGPRARGEARPLRAWQRAALETYRSRSASGGRDFLAVATPGAG KTTFALEIAADLLAAGEVRSVTVVAPTEHLKRQWANAASAVGVDLDPTFRNSAGATASDYTGVAVTYAQVAAHPALHRMR TAARRTLVILDEIHHAGDALSWGEAVREAFEPAARRLALTGTPFRSDVNPIPFVTYLPDAEGVTRSVADSSYGYAEALRD GVVRPVLFLAYSGEMSWRTSAGAELSARLGEPLNSEQTAAAWRTALDPRGDWMPAVLAAADTRLSQVRRGGMPDAGGLVI ATDHTNARAYAGLLRRITGASPVIVLSDDPTASTKIATFRESTDRWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQA VGRFVRGRGRSETASVFLPSVPSLLALAGEMEVQRDHALDKPQREPDAFDDDALREANRRRDTPDKPDTLFTALGSSAQL DRVIFDGGEFGTPAASGSLEEEDFLGLPGLLEPDQVATLLRQRQAAQQAAAAKAQSAAGEPVVPAARQGEAGTDPGDRPV HEQIGDLRRELNKLVAAHYHRTGKPHGMIHAELRRSCGGPPSAQASTAQLQARIDTMRRWAG
Sequences:
>Translated_622_residues MAPRCAASSSGWRTTIESDVVRVGPLPQSSSGQGPSGRGPRARGEARPLRAWQRAALETYRSRSASGGRDFLAVATPGAG KTTFALEIAADLLAAGEVRSVTVVAPTEHLKRQWANAASAVGVDLDPTFRNSAGATASDYTGVAVTYAQVAAHPALHRMR TAARRTLVILDEIHHAGDALSWGEAVREAFEPAARRLALTGTPFRSDVNPIPFVTYLPDAEGVTRSVADSSYGYAEALRD GVVRPVLFLAYSGEMSWRTSAGAELSARLGEPLNSEQTAAAWRTALDPRGDWMPAVLAAADTRLSQVRRGGMPDAGGLVI ATDHTNARAYAGLLRRITGASPVIVLSDDPTASTKIATFRESTDRWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQA VGRFVRGRGRSETASVFLPSVPSLLALAGEMEVQRDHALDKPQREPDAFDDDALREANRRRDTPDKPDTLFTALGSSAQL DRVIFDGGEFGTPAASGSLEEEDFLGLPGLLEPDQVATLLRQRQAAQQAAAAKAQSAAGEPVVPAARQGEAGTDPGDRPV HEQIGDLRRELNKLVAAHYHRTGKPHGMIHAELRRSCGGPPSAQASTAQLQARIDTMRRWAG >Mature_621_residues APRCAASSSGWRTTIESDVVRVGPLPQSSSGQGPSGRGPRARGEARPLRAWQRAALETYRSRSASGGRDFLAVATPGAGK TTFALEIAADLLAAGEVRSVTVVAPTEHLKRQWANAASAVGVDLDPTFRNSAGATASDYTGVAVTYAQVAAHPALHRMRT AARRTLVILDEIHHAGDALSWGEAVREAFEPAARRLALTGTPFRSDVNPIPFVTYLPDAEGVTRSVADSSYGYAEALRDG VVRPVLFLAYSGEMSWRTSAGAELSARLGEPLNSEQTAAAWRTALDPRGDWMPAVLAAADTRLSQVRRGGMPDAGGLVIA TDHTNARAYAGLLRRITGASPVIVLSDDPTASTKIATFRESTDRWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAV GRFVRGRGRSETASVFLPSVPSLLALAGEMEVQRDHALDKPQREPDAFDDDALREANRRRDTPDKPDTLFTALGSSAQLD RVIFDGGEFGTPAASGSLEEEDFLGLPGLLEPDQVATLLRQRQAAQQAAAAKAQSAAGEPVVPAARQGEAGTDPGDRPVH EQIGDLRRELNKLVAAHYHRTGKPHGMIHAELRRSCGGPPSAQASTAQLQARIDTMRRWAG
Specific function: Unknown
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.leprae ML1624 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR014001 - InterPro: IPR014021 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: NA
Molecular weight: Translated: 66150; Mature: 66018
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPRCAASSSGWRTTIESDVVRVGPLPQSSSGQGPSGRGPRARGEARPLRAWQRAALETY CCCCCCCCCCCCCEEHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH RSRSASGGRDFLAVATPGAGKTTFALEIAADLLAAGEVRSVTVVAPTEHLKRQWANAASA HHCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH VGVDLDPTFRNSAGATASDYTGVAVTYAQVAAHPALHRMRTAARRTLVILDEIHHAGDAL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SWGEAVREAFEPAARRLALTGTPFRSDVNPIPFVTYLPDAEGVTRSVADSSYGYAEALRD HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHC GVVRPVLFLAYSGEMSWRTSAGAELSARLGEPLNSEQTAAAWRTALDPRGDWMPAVLAAA CHHHHHHHEEECCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH DTRLSQVRRGGMPDAGGLVIATDHTNARAYAGLLRRITGASPVIVLSDDPTASTKIATFR HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEHHHH ESTDRWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAVGRFVRGRGRSETASVFLPS HCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC VPSLLALAGEMEVQRDHALDKPQREPDAFDDDALREANRRRDTPDKPDTLFTALGSSAQL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC DRVIFDGGEFGTPAASGSLEEEDFLGLPGLLEPDQVATLLRQRQAAQQAAAAKAQSAAGE CCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PVVPAARQGEAGTDPGDRPVHEQIGDLRRELNKLVAAHYHRTGKPHGMIHAELRRSCGGP CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCC PSAQASTAQLQARIDTMRRWAG CCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure APRCAASSSGWRTTIESDVVRVGPLPQSSSGQGPSGRGPRARGEARPLRAWQRAALETY CCCCCCCCCCCCEEHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH RSRSASGGRDFLAVATPGAGKTTFALEIAADLLAAGEVRSVTVVAPTEHLKRQWANAASA HHCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH VGVDLDPTFRNSAGATASDYTGVAVTYAQVAAHPALHRMRTAARRTLVILDEIHHAGDAL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SWGEAVREAFEPAARRLALTGTPFRSDVNPIPFVTYLPDAEGVTRSVADSSYGYAEALRD HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHC GVVRPVLFLAYSGEMSWRTSAGAELSARLGEPLNSEQTAAAWRTALDPRGDWMPAVLAAA CHHHHHHHEEECCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH DTRLSQVRRGGMPDAGGLVIATDHTNARAYAGLLRRITGASPVIVLSDDPTASTKIATFR HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEHHHH ESTDRWMVAVRMVSEGVDVPRLAVGVYATSASTPLYFAQAVGRFVRGRGRSETASVFLPS HCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC VPSLLALAGEMEVQRDHALDKPQREPDAFDDDALREANRRRDTPDKPDTLFTALGSSAQL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC DRVIFDGGEFGTPAASGSLEEEDFLGLPGLLEPDQVATLLRQRQAAQQAAAAKAQSAAGE CCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC PVVPAARQGEAGTDPGDRPVHEQIGDLRRELNKLVAAHYHRTGKPHGMIHAELRRSCGGP CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCC PSAQASTAQLQARIDTMRRWAG CCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]