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The map label for this gene is yggS [C]

Identifier: 158316849

GI number: 158316849

Start: 6094379

End: 6095338

Strand: Reverse

Name: yggS [C]

Synonym: Franean1_5092

Alternate gene names: 158316849

Gene position: 6095338-6094379 (Counterclockwise)

Preceding gene: 158316850

Following gene: 158316848

Centisome position: 67.86

GC content: 70.94

Gene sequence:

>960_bases
ATGAGCGGCCTCGAGCGCGAGGTGGACCCGCGCCGGCTGGCCGAGTTGCGCGAGCGGCTGACAGTCGTCCGTGACCGGAT
CACCGTGGCGGCCCGGGACGCCGGCCGCGACCCGGCGGAGCTGACCCTGATCGCCGTCAGCAAGACCCGACCCGCCGAGG
ACGTCCTCGCGCTGGTCGCGCTGGGTGTCCGCCACTTCGCCGAGAACCGCGAGCAGGAGGCCGGGCCGAAGACCGAGGCC
GTCCGGCTGGCGCTGGCCGCCGCCGCGGCGGGCGGCTCGGATGAGCACACGATGTGGTCCGATGATGACCGTTTCCGGGA
ATCGAGTCCGTTGGCCGACACGTCGGGGGCATGGCGTCCATCACGTGTGGATCAGGGTCCGACCCTCGGGCCGGCCGCCG
GGCCCGATGTGCCGGTCTGGCATTTCGTCGGCCAGCTCCAGCGCAACAAGGCCCGGGCCGTGGCGGGCTGGGTGCACTGC
GTGCAGTCGGTGGACCGAGCGCGACTGGTCGAAGCCCTTTCCCGGGCAGCAACGGCACGTGGTCGTCAGATTTCAGTGTG
CATACAGGTCAATCTGGACATTGCGGAGCCAGTCGGTGCACCGGGTGCGCCCGCGGCGCGAAATGCCCTGTCTACCAGGG
AAAACGAGCCCACCGCCGGGGCTGCGGACGGCGCTCGCGGCGGGGCCCTGCCCGCGGACGTACCGGCGCTCGCCGAGCTC
GTCGCGGGCTCCGAAGGGCTTGTTCTGACGGGTGTGATGGCTGTCGCGCCACGCGGAGCACCCGCCAGGCCGGCCTTCGC
TCGACTCCGTGAGGTAGCCGACCGACTTCTTTCCGAACATCCCGCGGCGACGCTAGTCAGTGCAGGGATGTCCGGCGATC
TCGAGGACGCGGTCGCGGAGGGCGCGACACACCTTCGGATCGGCACCGCTTTGTTCGGTGAACGGCACGGTGTCCCTTAG

Upstream 100 bases:

>100_bases
GTGTTGTGGTATCCGATCGTTGCAGCGCCGAGTCGGGGGATCTCTACTCGTACCGCCGCGACGGGCGGACCGGGCGGTTC
GCCGGCCTCGCCTGGCTGTC

Downstream 100 bases:

>100_bases
AGTCGCGCCCATGGGGCTCGGTCGCAGGGCGATGGTCTACCTCGGGCTCGCCGAGGAGGACGAGGACTATCTCGACGACG
ACTATGACGACGGCGGTCAC

Product: PLP-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSGLEREVDPRRLAELRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVALGVRHFAENREQEAGPKTEA
VRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRPSRVDQGPTLGPAAGPDVPVWHFVGQLQRNKARAVAGWVHC
VQSVDRARLVEALSRAATARGRQISVCIQVNLDIAEPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAEL
VAGSEGLVLTGVMAVAPRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAEGATHLRIGTALFGERHGVP

Sequences:

>Translated_319_residues
MSGLEREVDPRRLAELRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVALGVRHFAENREQEAGPKTEA
VRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRPSRVDQGPTLGPAAGPDVPVWHFVGQLQRNKARAVAGWVHC
VQSVDRARLVEALSRAATARGRQISVCIQVNLDIAEPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAEL
VAGSEGLVLTGVMAVAPRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAEGATHLRIGTALFGERHGVP
>Mature_318_residues
SGLEREVDPRRLAELRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVALGVRHFAENREQEAGPKTEAV
RLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRPSRVDQGPTLGPAAGPDVPVWHFVGQLQRNKARAVAGWVHCV
QSVDRARLVEALSRAATARGRQISVCIQVNLDIAEPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAELV
AGSEGLVLTGVMAVAPRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAEGATHLRIGTALFGERHGVP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Escherichia coli, GI1789321, Length=307, Percent_Identity=28.6644951140065, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 33354; Mature: 33223

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLEREVDPRRLAELRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCHHHHHHHHH
LGVRHFAENREQEAGPKTEAVRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
SRVDQGPTLGPAAGPDVPVWHFVGQLQRNKARAVAGWVHCVQSVDRARLVEALSRAATAR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRQISVCIQVNLDIAEPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAEL
CCEEEEEEEEECCHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
VAGSEGLVLTGVMAVAPRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAE
HCCCCCCEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHC
GATHLRIGTALFGERHGVP
CCHHEEEHHHHHHHCCCCC
>Mature Secondary Structure 
SGLEREVDPRRLAELRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCHHHHHHHHH
LGVRHFAENREQEAGPKTEAVRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
SRVDQGPTLGPAAGPDVPVWHFVGQLQRNKARAVAGWVHCVQSVDRARLVEALSRAATAR
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRQISVCIQVNLDIAEPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAEL
CCEEEEEEEEECCHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
VAGSEGLVLTGVMAVAPRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAE
HCCCCCCEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHC
GATHLRIGTALFGERHGVP
CCHHEEEHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]