Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

Click here to switch to the map view.

The map label for this gene is 158316621

Identifier: 158316621

GI number: 158316621

Start: 5826402

End: 5827088

Strand: Reverse

Name: 158316621

Synonym: Franean1_4858

Alternate gene names: NA

Gene position: 5827088-5826402 (Counterclockwise)

Preceding gene: 158316623

Following gene: 158316620

Centisome position: 64.87

GC content: 75.55

Gene sequence:

>687_bases
ATGGACCGGACGCACATGGCAGACTGGGGGAACCGCACGGATCGGCGGGCCGGCGGCGGCCGCCGCGGCGCGCGAGCGGG
TCACGAGGGACGAACCAGCGGGGGGCCGCGATCGCTGCCTGCCCGATCTCTGCTGCTTCTCGCGCTGGCGGTCGTGACCG
GGCTCGGGCTCACCGCCTGCCGGGCCGGTTCCGCCTCGACTGCGGGCTCCGTGCCCGCCCCCGCCACGGCATCCGCCTCC
GCTGCCAGCGCTGGTATCGGCGCCGAGACGGCTGACGCGGCGACCGCGTCGGAGCCGTCGGAGTCGTCGGCGCCGGCGGG
CGGCGCGGGTGTCGGCGGTCCCGGTTCGCTGACCGTCGACATCACCTCGCCGGTCGACGTCGCGGGGCATGTGTCGACGG
CCGTGAGCTGCCAGTCCACCGCGCGGCGCTACGTCGAGTCCTCGACGGCCACCGTCGAGGGCAGGACGGTGGCGCAGGGG
GTGCGGGTCGCCGGCTACGACGGGCCGGGCAGTTACCCGGCCGTCATCACGGTCTCGGTCGTCGCGCCCGACTCCGGCCG
CTACGCGATCGACGCGGTTCCCGCCACCGTCGAGATCACTTCGGCCGGTGGCTCCGTGTCGTTCAGCGCGAGCACGTCCG
GCGGGCGGACGCTCACGGGCTCGATCGTCTGGGCCTGCTCCGCCTGA

Upstream 100 bases:

>100_bases
GTTCACATCCGGCTCACACGGCCGGCTGATGTCGTTCTTCCTGCCGGGCCGGCGCGTCTGCCGGTTCGGCGGACGGCGAC
ATCATCACCGGAGCGACAGG

Downstream 100 bases:

>100_bases
CCTGACGGGTGCCGCGGGGGACCTCACGTCGGCCCGCGGCACCGCCCGTCCACCCGCCGCGGAGGAAGTTCGAGACAGGC
CTCTCGGCGGCGATGAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MDRTHMADWGNRTDRRAGGGRRGARAGHEGRTSGGPRSLPARSLLLLALAVVTGLGLTACRAGSASTAGSVPAPATASAS
AASAGIGAETADAATASEPSESSAPAGGAGVGGPGSLTVDITSPVDVAGHVSTAVSCQSTARRYVESSTATVEGRTVAQG
VRVAGYDGPGSYPAVITVSVVAPDSGRYAIDAVPATVEITSAGGSVSFSASTSGGRTLTGSIVWACSA

Sequences:

>Translated_228_residues
MDRTHMADWGNRTDRRAGGGRRGARAGHEGRTSGGPRSLPARSLLLLALAVVTGLGLTACRAGSASTAGSVPAPATASAS
AASAGIGAETADAATASEPSESSAPAGGAGVGGPGSLTVDITSPVDVAGHVSTAVSCQSTARRYVESSTATVEGRTVAQG
VRVAGYDGPGSYPAVITVSVVAPDSGRYAIDAVPATVEITSAGGSVSFSASTSGGRTLTGSIVWACSA
>Mature_228_residues
MDRTHMADWGNRTDRRAGGGRRGARAGHEGRTSGGPRSLPARSLLLLALAVVTGLGLTACRAGSASTAGSVPAPATASAS
AASAGIGAETADAATASEPSESSAPAGGAGVGGPGSLTVDITSPVDVAGHVSTAVSCQSTARRYVESSTATVEGRTVAQG
VRVAGYDGPGSYPAVITVSVVAPDSGRYAIDAVPATVEITSAGGSVSFSASTSGGRTLTGSIVWACSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22016; Mature: 22016

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTHMADWGNRTDRRAGGGRRGARAGHEGRTSGGPRSLPARSLLLLALAVVTGLGLTAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHC
RAGSASTAGSVPAPATASASAASAGIGAETADAATASEPSESSAPAGGAGVGGPGSLTVD
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
ITSPVDVAGHVSTAVSCQSTARRYVESSTATVEGRTVAQGVRVAGYDGPGSYPAVITVSV
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCHHCCCEEEECCCCCCCCEEEEEEE
VAPDSGRYAIDAVPATVEITSAGGSVSFSASTSGGRTLTGSIVWACSA
ECCCCCCEEEEECCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MDRTHMADWGNRTDRRAGGGRRGARAGHEGRTSGGPRSLPARSLLLLALAVVTGLGLTAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHC
RAGSASTAGSVPAPATASASAASAGIGAETADAATASEPSESSAPAGGAGVGGPGSLTVD
CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
ITSPVDVAGHVSTAVSCQSTARRYVESSTATVEGRTVAQGVRVAGYDGPGSYPAVITVSV
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCHHCCCEEEECCCCCCCCEEEEEEE
VAPDSGRYAIDAVPATVEITSAGGSVSFSASTSGGRTLTGSIVWACSA
ECCCCCCEEEEECCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA