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The map label for this gene is yxjL [H]

Identifier: 158316449

GI number: 158316449

Start: 5595050

End: 5595721

Strand: Reverse

Name: yxjL [H]

Synonym: Franean1_4684

Alternate gene names: 158316449

Gene position: 5595721-5595050 (Counterclockwise)

Preceding gene: 158316450

Following gene: 158316448

Centisome position: 62.3

GC content: 69.2

Gene sequence:

>672_bases
GTGATCCGTGTCCTTTTGGCCGACGACCAGGCGCTCATCCGCGCCGGTTTCCGTGTCCTCGTCGAGGCCGCCGCCGACAT
CACCGTGGTCGCCGAAGCGGCCGACGGCGCCGAAGCGGTCCGCCTGGCACGTGAGACCCGTCCCGACGTCATCCTGATGG
ACATCAGGATGCCGGGCACCGACGGCCTGTCCGCCACCCGCGAACTGACCGGCGACCCGACGCTCAACGAGGTGAAGGTG
CTTGTCCTGACCACCTTCGAGCTCGACGAGCACGTCTTCGAGGCTCTGCGGGTCGGGGCCAGCGGCTTCCTCGGCAAAGG
GGTGGAACCCGACGAGCTGGTCGCCGCGATCCGGGTCGTCGCCCGCGGCGACGCGCTCCTGTCCCCGCAGGCGACCCGTC
ACCTCATCGAGCAGTACCTGCGGCAGCCGGCCACACCGGCACCCGCGGTCACCGCGGGGCTGGATCTGCTCACCAAGCGG
GAGAACGAGATCGTCAGGCTCATCGCCTACGGGCTGACGAACGACGAGATCGCCGAACAGCTGTACCTGTCGCCGCTGAC
CGTCAAGACACACGCGAACCGCGCGATGACCAAGGTAGCGGCCCGCGACCGCGCCCAGCTCGTCGTGATCGCCTACCAGA
CCGGGCTCGCCGAGGCCCCCAGCAGGAATTGA

Upstream 100 bases:

>100_bases
CGCCCCCGGCCGCCTCCACATTCAATGGCAGACGGGGGAGTGCCACGCTGCAGACGGCTACCGCCACCCCCCGCACCGCA
CTTGTGAAGGTGACACCCCA

Downstream 100 bases:

>100_bases
CCCGTGCCGGTTCGGGGCCGGTGAGCTCGGGTGGCCGTCTGTTCCCGTGAACGGATGGCGGGCATCCTTGACCATCAGGA
TGTTAGCGCTAACATTCGAC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MIRVLLADDQALIRAGFRVLVEAAADITVVAEAADGAEAVRLARETRPDVILMDIRMPGTDGLSATRELTGDPTLNEVKV
LVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAIRVVARGDALLSPQATRHLIEQYLRQPATPAPAVTAGLDLLTKR
ENEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGLAEAPSRN

Sequences:

>Translated_223_residues
MIRVLLADDQALIRAGFRVLVEAAADITVVAEAADGAEAVRLARETRPDVILMDIRMPGTDGLSATRELTGDPTLNEVKV
LVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAIRVVARGDALLSPQATRHLIEQYLRQPATPAPAVTAGLDLLTKR
ENEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGLAEAPSRN
>Mature_223_residues
MIRVLLADDQALIRAGFRVLVEAAADITVVAEAADGAEAVRLARETRPDVILMDIRMPGTDGLSATRELTGDPTLNEVKV
LVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAIRVVARGDALLSPQATRHLIEQYLRQPATPAPAVTAGLDLLTKR
ENEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGLAEAPSRN

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=219, Percent_Identity=35.6164383561644, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788521, Length=212, Percent_Identity=34.4339622641509, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787473, Length=210, Percent_Identity=35.7142857142857, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790102, Length=207, Percent_Identity=34.2995169082126, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786747, Length=206, Percent_Identity=29.126213592233, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788712, Length=217, Percent_Identity=24.4239631336406, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082052, Length=111, Percent_Identity=34.2342342342342, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786599, Length=135, Percent_Identity=32.5925925925926, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24069; Mature: 24069

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVLLADDQALIRAGFRVLVEAAADITVVAEAADGAEAVRLARETRPDVILMDIRMPGT
CEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCC
DGLSATRELTGDPTLNEVKVLVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAIRVV
CCCCHHHHCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
ARGDALLSPQATRHLIEQYLRQPATPAPAVTAGLDLLTKRENEIVRLIAYGLTNDEIAEQ
HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHEEEEEEECCCCHHHHHH
LYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGLAEAPSRN
HHCCCEEEEHHCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MIRVLLADDQALIRAGFRVLVEAAADITVVAEAADGAEAVRLARETRPDVILMDIRMPGT
CEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCC
DGLSATRELTGDPTLNEVKVLVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAAIRVV
CCCCHHHHCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
ARGDALLSPQATRHLIEQYLRQPATPAPAVTAGLDLLTKRENEIVRLIAYGLTNDEIAEQ
HCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHEEEEEEECCCCHHHHHH
LYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGLAEAPSRN
HHCCCEEEEHHCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]