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The map label for this gene is xylR [H]

Identifier: 158316429

GI number: 158316429

Start: 5566925

End: 5568154

Strand: Reverse

Name: xylR [H]

Synonym: Franean1_4664

Alternate gene names: 158316429

Gene position: 5568154-5566925 (Counterclockwise)

Preceding gene: 158316434

Following gene: 158316424

Centisome position: 61.99

GC content: 76.59

Gene sequence:

>1230_bases
GTGCCCTTGGAGCTGTCCGGACCGCGACCGACGAGCGGGGCCCGGCAGGCGACCCTGCGTGAGAGCAACCTCGCCCTGGT
CGCCCGCACCGTCGCCGCCGCGGCGCCGGCGTACCTTTCGCGGGCGGACGTCGCCGGAGCGACCTCGATGACCCGGGCCA
CCGCGTCGCGCCTCGTCGACGAGCTCGTCGCCGGCGGTGTCGTGGACGAGCTGGGCCCGGACGAGCTGGACCGGCCCGCG
CCCCGCCGCGGCCGGCCAGGGACGCCGCTGGCCCCGGGCTCGCGGATCGCGGCGCTGGGGCTCCAGATCGACGCCGGATT
CCTGGCGGCCAGAGTGATCAACCTGCGCGGCCAGGTGCTCGCCGAGTGGGTCGAGAGCGGGGATCTCACCGCGAGCCCGC
CGGAGGTGGTGCTGCGTCGCCTCGACGCCGCGAGCGGCGACGTCCTGTCCCGGCTGCCCACCGGATCCCGCCTCGTCGGA
GCCCGGCTCGCCCTGCCCGGCATCGTCGCCGTGGGGGAGGGGCTGCTGCTGCGGGCACCGACCCTCGGCTGGTCGGACCT
CCGGTTGGTCGACGTGCTGGGCGTGGGGACGCTCGCCGGCCTGCCGTTGACGATCGGCAACGAAGCTGACCTGGCCGCGC
GGGCGGTCGCCGAGAGCGCGCCGGGACGGTCCGGCCCGCTGCCGGATTTCATCTACCTGTCGGGCGGGATCGGCATCGGC
GGCGCCGTGGTCCGGGGCGGTCAGGTCATCACCGGCCCGCACGGCTGGGCCGGCGAGATCGGGCACGTCTGCGTCGACCC
CAACGGCCCGAGCTGCCCGTGCGGGTCGACCGGCTGCCTGGAGCGTTACGCCGGGCGGCACACGCTGCTCGCCGCCGTCG
GGCTGGGCGCGACCGCGCCGCCCGACCGCCTGTTCGAGCGGGTGGCGGCCGGCGATCAGGACGCGTGCCAGGCCGTCGGT
GTGGCGGCATGGGCCCTCAGCATCGCGATGGCCAGCGTCATCAACATGTTCGACGTTCCCACCGTTGTCCTCGGGGGCTA
TCTGGGCCAGATCGCCGGCCTGCTGCGCCCGGACCTGGACCCGGCGCTGCGGGCCCGCGTGCTGTCGGCCCGCTGGGTCG
CGCCGACGATCGTCGCGGCCGAGCCCGGCTCCGCCCCCGGCGCCACCGGCGCGGCCTTCGCTGAGCTGGCGGCGGTGATC
GCCGATCCGGCGCGCTGGACGGTCCGGTAG

Upstream 100 bases:

>100_bases
GAACTTGTCCTCGGGAGTGGGCTGTCGTGGCATCGCTGCTCCGATCCGCGTCTTTAGTATTTCGATAAAACATAATCCTG
GGTCGCGGTAGCGTCAACGT

Downstream 100 bases:

>100_bases
GCGTCGCGCCACCGCTCGCCGCACTCCGCGAGCGGGCCGGAAGGAGCTGGAGATCCCAGACACCATCCAGGACGAGACGA
TCAGCGTGCGGAACGGCGTG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MPLELSGPRPTSGARQATLRESNLALVARTVAAAAPAYLSRADVAGATSMTRATASRLVDELVAGGVVDELGPDELDRPA
PRRGRPGTPLAPGSRIAALGLQIDAGFLAARVINLRGQVLAEWVESGDLTASPPEVVLRRLDAASGDVLSRLPTGSRLVG
ARLALPGIVAVGEGLLLRAPTLGWSDLRLVDVLGVGTLAGLPLTIGNEADLAARAVAESAPGRSGPLPDFIYLSGGIGIG
GAVVRGGQVITGPHGWAGEIGHVCVDPNGPSCPCGSTGCLERYAGRHTLLAAVGLGATAPPDRLFERVAAGDQDACQAVG
VAAWALSIAMASVINMFDVPTVVLGGYLGQIAGLLRPDLDPALRARVLSARWVAPTIVAAEPGSAPGATGAAFAELAAVI
ADPARWTVR

Sequences:

>Translated_409_residues
MPLELSGPRPTSGARQATLRESNLALVARTVAAAAPAYLSRADVAGATSMTRATASRLVDELVAGGVVDELGPDELDRPA
PRRGRPGTPLAPGSRIAALGLQIDAGFLAARVINLRGQVLAEWVESGDLTASPPEVVLRRLDAASGDVLSRLPTGSRLVG
ARLALPGIVAVGEGLLLRAPTLGWSDLRLVDVLGVGTLAGLPLTIGNEADLAARAVAESAPGRSGPLPDFIYLSGGIGIG
GAVVRGGQVITGPHGWAGEIGHVCVDPNGPSCPCGSTGCLERYAGRHTLLAAVGLGATAPPDRLFERVAAGDQDACQAVG
VAAWALSIAMASVINMFDVPTVVLGGYLGQIAGLLRPDLDPALRARVLSARWVAPTIVAAEPGSAPGATGAAFAELAAVI
ADPARWTVR
>Mature_408_residues
PLELSGPRPTSGARQATLRESNLALVARTVAAAAPAYLSRADVAGATSMTRATASRLVDELVAGGVVDELGPDELDRPAP
RRGRPGTPLAPGSRIAALGLQIDAGFLAARVINLRGQVLAEWVESGDLTASPPEVVLRRLDAASGDVLSRLPTGSRLVGA
RLALPGIVAVGEGLLLRAPTLGWSDLRLVDVLGVGTLAGLPLTIGNEADLAARAVAESAPGRSGPLPDFIYLSGGIGIGG
AVVRGGQVITGPHGWAGEIGHVCVDPNGPSCPCGSTGCLERYAGRHTLLAAVGLGATAPPDRLFERVAAGDQDACQAVGV
AAWALSIAMASVINMFDVPTVVLGGYLGQIAGLLRPDLDPALRARVLSARWVAPTIVAAEPGSAPGATGAAFAELAAVIA
DPARWTVR

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1787878, Length=396, Percent_Identity=25.7575757575758, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786891, Length=380, Percent_Identity=23.6842105263158, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87082230, Length=212, Percent_Identity=35.8490566037736, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41389; Mature: 41258

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLELSGPRPTSGARQATLRESNLALVARTVAAAAPAYLSRADVAGATSMTRATASRLVD
CCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ELVAGGVVDELGPDELDRPAPRRGRPGTPLAPGSRIAALGLQIDAGFLAARVINLRGQVL
HHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHH
AEWVESGDLTASPPEVVLRRLDAASGDVLSRLPTGSRLVGARLALPGIVAVGEGLLLRAP
HHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCEEEECC
TLGWSDLRLVDVLGVGTLAGLPLTIGNEADLAARAVAESAPGRSGPLPDFIYLSGGIGIG
CCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC
GAVVRGGQVITGPHGWAGEIGHVCVDPNGPSCPCGSTGCLERYAGRHTLLAAVGLGATAP
HHEEECCEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCC
PDRLFERVAAGDQDACQAVGVAAWALSIAMASVINMFDVPTVVLGGYLGQIAGLLRPDLD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PALRARVLSARWVAPTIVAAEPGSAPGATGAAFAELAAVIADPARWTVR
HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PLELSGPRPTSGARQATLRESNLALVARTVAAAAPAYLSRADVAGATSMTRATASRLVD
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ELVAGGVVDELGPDELDRPAPRRGRPGTPLAPGSRIAALGLQIDAGFLAARVINLRGQVL
HHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHH
AEWVESGDLTASPPEVVLRRLDAASGDVLSRLPTGSRLVGARLALPGIVAVGEGLLLRAP
HHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCEEEECC
TLGWSDLRLVDVLGVGTLAGLPLTIGNEADLAARAVAESAPGRSGPLPDFIYLSGGIGIG
CCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC
GAVVRGGQVITGPHGWAGEIGHVCVDPNGPSCPCGSTGCLERYAGRHTLLAAVGLGATAP
HHEEECCEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCC
PDRLFERVAAGDQDACQAVGVAAWALSIAMASVINMFDVPTVVLGGYLGQIAGLLRPDLD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PALRARVLSARWVAPTIVAAEPGSAPGATGAAFAELAAVIADPARWTVR
HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]