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The map label for this gene is ycjO [C]

Identifier: 158316385

GI number: 158316385

Start: 5501666

End: 5502661

Strand: Reverse

Name: ycjO [C]

Synonym: Franean1_4616

Alternate gene names: 158316385

Gene position: 5502661-5501666 (Counterclockwise)

Preceding gene: 158316386

Following gene: 158316384

Centisome position: 61.26

GC content: 69.88

Gene sequence:

>996_bases
GTGACCGCGAACGGAGCGGAGCCTGGCGCGCGGCGCCTGTCCGAGCGGCGCGGACAGGCGCGCGGCGACGTGCGCAGTCC
GAGCGGGCCGGGGACGCGGCGGACGCGGCGGACGGCTCCGCTTTCGGCGCGGGCACGAGCCGAACGCCGGCTCGGCTGGG
CGCTGTGCGCGCCGGCGGTCATCGTCATCCTGGCAGTGACCGGCTATCCCGTCGGGTACGCGGTCTATCTGTCCCTGCAC
CGCTATGACCTGCGGTTCCCCGCCGACTCCGAGTTCGTCGGGCTGACGAACTACGCGACCGTGCTGACCTCGCCGCTGTG
GTGGCAGGCACTCGCGGTGACCGTGATCATCGCGGTCATCTCGGTGACGATTCAGTTCGTGCTCGGGCTGGCGCTCGCGC
TGGCGATGCACCGGGCACTGATCGGCCGCGGGCTGATCCGGACGGTGATCCTCATTCCGTACGGGATCGTGACCGTGGTC
GCCGCGTTCGGTTGGCGGTACGCGTGGACACCGGACACCGGCTACCTGTCCGGCCTGTTCGGTGACGCCGCCCCACTGAC
CTCGCAGGTCCAGGGCATCGCCGTGATCGTTCTGGCCGAGGTGTGGAAGACGACGCCGTTCATGGTGCTGCTGCTGCTCG
CCGGGCTGGCGCTGGTTCCGGAGGACCTGCTGCGGGCGGCGAAGGTCGACGGGGCCACCGCCTGGCAGCGGCTGACCCGG
GTGATCCTGCCGTTGATGAAACCGGCGATCCTGGTCGCGCTGCTGTTCCGGGTGCTGGACGCGTTCCGCATCTTCGACAG
CATCTACGTGCTGACCGCCGGGGCGTACGACACCCGGTCGGTGTCGATCCTGGGTTACGACAACCTGTTCACGGCGCTGA
ACCTGGGTGTCGGCTCCTCGTTGTCGGTTCTCATCTTCCTCGTCGTGGCGCTCGTGGCGTTCGTTTTCGTCAAGGGGTTC
GGCGCCGCCGCGCCCGGTGGGGAGGGCCACCGCTGA

Upstream 100 bases:

>100_bases
TCGCGCACACCCTCTCACCGCCGTCCTCGGCGAGTCTCGGCAGGCTCGGGCAGCTGCGCGGGGCGATCGCCGACGCCATC
GAGTCGAAGGGACTGGTGCC

Downstream 100 bases:

>100_bases
TGACCACCGTCACCTCTGCTCCCGCAGCCGGCCCCGCCACGGCGCCTGCCCGGCGCCCGACGCGGGACCGCACCGCGCTG
CTCGGCTGGTCAGCCGCGAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTANGAEPGARRLSERRGQARGDVRSPSGPGTRRTRRTAPLSARARAERRLGWALCAPAVIVILAVTGYPVGYAVYLSLH
RYDLRFPADSEFVGLTNYATVLTSPLWWQALAVTVIIAVISVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVV
AAFGWRYAWTPDTGYLSGLFGDAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLRAAKVDGATAWQRLTR
VILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILGYDNLFTALNLGVGSSLSVLIFLVVALVAFVFVKGF
GAAAPGGEGHR

Sequences:

>Translated_331_residues
MTANGAEPGARRLSERRGQARGDVRSPSGPGTRRTRRTAPLSARARAERRLGWALCAPAVIVILAVTGYPVGYAVYLSLH
RYDLRFPADSEFVGLTNYATVLTSPLWWQALAVTVIIAVISVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVV
AAFGWRYAWTPDTGYLSGLFGDAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLRAAKVDGATAWQRLTR
VILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILGYDNLFTALNLGVGSSLSVLIFLVVALVAFVFVKGF
GAAAPGGEGHR
>Mature_330_residues
TANGAEPGARRLSERRGQARGDVRSPSGPGTRRTRRTAPLSARARAERRLGWALCAPAVIVILAVTGYPVGYAVYLSLHR
YDLRFPADSEFVGLTNYATVLTSPLWWQALAVTVIIAVISVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVVA
AFGWRYAWTPDTGYLSGLFGDAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLRAAKVDGATAWQRLTRV
ILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILGYDNLFTALNLGVGSSLSVLIFLVVALVAFVFVKGFG
AAAPGGEGHR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=253, Percent_Identity=28.8537549407115, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=28.0701754385965, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790465, Length=228, Percent_Identity=25.4385964912281, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35531; Mature: 35400

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANGAEPGARRLSERRGQARGDVRSPSGPGTRRTRRTAPLSARARAERRLGWALCAPAV
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IVILAVTGYPVGYAVYLSLHRYDLRFPADSEFVGLTNYATVLTSPLWWQALAVTVIIAVI
HHHHHHCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
SVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVVAAFGWRYAWTPDTGYLSGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHC
GDAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLRAAKVDGATAWQRLTR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH
VILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILGYDNLFTALNLGVGSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHCCCCCH
LSVLIFLVVALVAFVFVKGFGAAAPGGEGHR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TANGAEPGARRLSERRGQARGDVRSPSGPGTRRTRRTAPLSARARAERRLGWALCAPAV
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IVILAVTGYPVGYAVYLSLHRYDLRFPADSEFVGLTNYATVLTSPLWWQALAVTVIIAVI
HHHHHHCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
SVTIQFVLGLALALAMHRALIGRGLIRTVILIPYGIVTVVAAFGWRYAWTPDTGYLSGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHC
GDAAPLTSQVQGIAVIVLAEVWKTTPFMVLLLLAGLALVPEDLLRAAKVDGATAWQRLTR
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH
VILPLMKPAILVALLFRVLDAFRIFDSIYVLTAGAYDTRSVSILGYDNLFTALNLGVGSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHCCCCCH
LSVLIFLVVALVAFVFVKGFGAAAPGGEGHR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]