| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316301
Identifier: 158316301
GI number: 158316301
Start: 5401735
End: 5402856
Strand: Reverse
Name: 158316301
Synonym: Franean1_4528
Alternate gene names: NA
Gene position: 5402856-5401735 (Counterclockwise)
Preceding gene: 158316302
Following gene: 158316298
Centisome position: 60.15
GC content: 74.06
Gene sequence:
>1122_bases GTGTCGCGTTCCGCGCTTGTCATCGGTGGCACCGGGCCGACCGGGCCGGGAGTGGTGCGCGGACTGCTCGACCGCGGCTT CGACGTGACGATCCTGCACGGCGGCCAGCACGAGGTCGAGCTGCCCGCCGAGGTCCGCCACATCCACACCGACCCGCACT GGCCGGAAACGCTCGGCGCCGGCCTGGGCCGGGCGGAGTTCGACCTCGTGGTGGCCCAGTACGGGCGGCTCGCGGTCACC GCGCAGGTCCTCGCCGGCCGCACCGACCGGGTGGTTGCCGTCGGGGGTGCCCACGGCTCCCTCGCGCATGCCGCCGATCC GCGCTGGGGAGCGCTGGGTCGGCCCGCCCTGCCCCCCGAAGAGGGCGAGCACCTGGAACAGGACCCCGCACACGGCACGC TCGCGGTCAGGATGGCCGCCGCGGAACGGGCCCTGTTCGACGCCCACGCGGCAGGCGCGTTCGCGGCGACCCTGCTGGCC TATCCCGTGGTCTACGGCCCACGGCAGATCGCGCCGCACGAGTGGTGCATCGTGCGGCGGATCCTCGACGGCAGGCGCCG CATCGTCGTCGCCGACGGGGCCATCCGCATGGAGACCAGGCTCTACACCGAGCATGCGGTGCATGCCGTGCTGCTGGCGG TGGACCACCGCGCGGCCGCGTCCGGGCGCAAGTTCGTGGTCGCCGACGACAACGTGTTCACGATGCGCCAGCGCATCGAG TTCATCGCCGCCCGGCTCGGCGTGGACGTGGAACTGGTCGACATGCCCTACCCGCTGGCGACCCCGTGCCACCCGTACTG GCGCCACGGGCCCGACCACCGGCTGCGCGGCAACGCCCGCATCCGGGCGGAGCTGGGCTACGCCGACACCACCCCCGCGG CGGACGCCCTCGGCGCGACGGTCGGCTGGCTGCTCGAACACCCGCCGGTGCCCGGCGGTCCGGAGGAGAAGCGGCTCGGT GACCGGTTCGACTACGCCCATGAGGACGATCTGATGGAACGCTGGGCCGCGGTGCGCCGCGACTGGTCCGATGACGCGGA CCCGTTCCGGCCGACCCATGCCTACCGCCACCCGCGCCGTCCCGACGAGACGTGGTACCCAGGCGGTACGGCCACGCCGT AG
Upstream 100 bases:
>100_bases GTCGGCGCGCACCGAGGCCGGGTACGGCTGCGGCACGACACCCCTGCCGAAGCAGCGCCTACGAAGCGGCGCCGGCCAGA ACCGAGTGCGAGGAGAGGCT
Downstream 100 bases:
>100_bases TCGTTCCGACGTGGCCGTACCGGCGTACGGCTCAGGACTCGGCGATGGTCGCGACGTCGAGCACGAACCGGTACCGGACG TCGCCGGCACTGAGGCGGTC
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSRSALVIGGTGPTGPGVVRGLLDRGFDVTILHGGQHEVELPAEVRHIHTDPHWPETLGAGLGRAEFDLVVAQYGRLAVT AQVLAGRTDRVVAVGGAHGSLAHAADPRWGALGRPALPPEEGEHLEQDPAHGTLAVRMAAAERALFDAHAAGAFAATLLA YPVVYGPRQIAPHEWCIVRRILDGRRRIVVADGAIRMETRLYTEHAVHAVLLAVDHRAAASGRKFVVADDNVFTMRQRIE FIAARLGVDVELVDMPYPLATPCHPYWRHGPDHRLRGNARIRAELGYADTTPAADALGATVGWLLEHPPVPGGPEEKRLG DRFDYAHEDDLMERWAAVRRDWSDDADPFRPTHAYRHPRRPDETWYPGGTATP
Sequences:
>Translated_373_residues MSRSALVIGGTGPTGPGVVRGLLDRGFDVTILHGGQHEVELPAEVRHIHTDPHWPETLGAGLGRAEFDLVVAQYGRLAVT AQVLAGRTDRVVAVGGAHGSLAHAADPRWGALGRPALPPEEGEHLEQDPAHGTLAVRMAAAERALFDAHAAGAFAATLLA YPVVYGPRQIAPHEWCIVRRILDGRRRIVVADGAIRMETRLYTEHAVHAVLLAVDHRAAASGRKFVVADDNVFTMRQRIE FIAARLGVDVELVDMPYPLATPCHPYWRHGPDHRLRGNARIRAELGYADTTPAADALGATVGWLLEHPPVPGGPEEKRLG DRFDYAHEDDLMERWAAVRRDWSDDADPFRPTHAYRHPRRPDETWYPGGTATP >Mature_372_residues SRSALVIGGTGPTGPGVVRGLLDRGFDVTILHGGQHEVELPAEVRHIHTDPHWPETLGAGLGRAEFDLVVAQYGRLAVTA QVLAGRTDRVVAVGGAHGSLAHAADPRWGALGRPALPPEEGEHLEQDPAHGTLAVRMAAAERALFDAHAAGAFAATLLAY PVVYGPRQIAPHEWCIVRRILDGRRRIVVADGAIRMETRLYTEHAVHAVLLAVDHRAAASGRKFVVADDNVFTMRQRIEF IAARLGVDVELVDMPYPLATPCHPYWRHGPDHRLRGNARIRAELGYADTTPAADALGATVGWLLEHPPVPGGPEEKRLGD RFDYAHEDDLMERWAAVRRDWSDDADPFRPTHAYRHPRRPDETWYPGGTATP
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40792; Mature: 40661
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSALVIGGTGPTGPGVVRGLLDRGFDVTILHGGQHEVELPAEVRHIHTDPHWPETLGA CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCEECCHHHHEECCCCCCHHHHHC GLGRAEFDLVVAQYGRLAVTAQVLAGRTDRVVAVGGAHGSLAHAADPRWGALGRPALPPE CCCCHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC EGEHLEQDPAHGTLAVRMAAAERALFDAHAAGAFAATLLAYPVVYGPRQIAPHEWCIVRR CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH ILDGRRRIVVADGAIRMETRLYTEHAVHAVLLAVDHRAAASGRKFVVADDNVFTMRQRIE HHCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCHHHHHHHHH FIAARLGVDVELVDMPYPLATPCHPYWRHGPDHRLRGNARIRAELGYADTTPAADALGAT HHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH VGWLLEHPPVPGGPEEKRLGDRFDYAHEDDLMERWAAVRRDWSDDADPFRPTHAYRHPRR HHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC PDETWYPGGTATP CCCCCCCCCCCCC >Mature Secondary Structure SRSALVIGGTGPTGPGVVRGLLDRGFDVTILHGGQHEVELPAEVRHIHTDPHWPETLGA CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCEECCHHHHEECCCCCCHHHHHC GLGRAEFDLVVAQYGRLAVTAQVLAGRTDRVVAVGGAHGSLAHAADPRWGALGRPALPPE CCCCHHHHHHHHHCCCCEEEHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC EGEHLEQDPAHGTLAVRMAAAERALFDAHAAGAFAATLLAYPVVYGPRQIAPHEWCIVRR CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH ILDGRRRIVVADGAIRMETRLYTEHAVHAVLLAVDHRAAASGRKFVVADDNVFTMRQRIE HHCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCHHHHHHHHH FIAARLGVDVELVDMPYPLATPCHPYWRHGPDHRLRGNARIRAELGYADTTPAADALGAT HHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH VGWLLEHPPVPGGPEEKRLGDRFDYAHEDDLMERWAAVRRDWSDDADPFRPTHAYRHPRR HHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC PDETWYPGGTATP CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA