Click here to switch to the map view.

The map label for this gene is nisX1 [H]

Identifier: 158316242

GI number: 158316242

Start: 5332670

End: 5332984

Strand: Reverse

Name: nisX1 [H]

Synonym: Franean1_4466

Alternate gene names: 158316242

Gene position: 5332984-5332670 (Counterclockwise)

Preceding gene: 158316243

Following gene: 158316241

Centisome position: 59.37

GC content: 59.37

Gene sequence:

>315_bases
GTGTTGCGAGGACCGGTTGAGTTCGGTAACTATACGTCTACCCAGTTCGCTGCTACGTTGAAGAACCTCGGGATCCGCCA
GTCCGTCGGCCGGACCGGAATTTGCTATGACAATGCGATGGCCGAGTCCTTCTTCGCAGCTCTCAAGAACGAACGCGTCC
ACCGCACCGCCTATCCCACCCGAGAACACGCCCGACGCGACATTGCCCGATACATCGAACTTCGCTACAATACGACACGC
CGCCACTCGGGACTCGACTACCGAACCCCGCAGCAGGTCCACGACGAGTACCTGAAAAGGCAGACCGCCGCATAG

Upstream 100 bases:

>100_bases
ACCATCGCCGCGACCCTCAACGACCGGCCCCGCAAGACCCTCGACTGGAAGACCCCCACCGAAGCGATGAACAACCAGCT
ACTCTCACTTCAACAACCCG

Downstream 100 bases:

>100_bases
CCCAGACCTATAACGACTGTCCGGAATTAACGGGGCACATCATGGTGTGGTCGCTGCTCTACGCCCTGACACGCAACACT
CTCGGACTGATGCTGCTCCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MLRGPVEFGNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTR
RHSGLDYRTPQQVHDEYLKRQTAA

Sequences:

>Translated_104_residues
MLRGPVEFGNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTR
RHSGLDYRTPQQVHDEYLKRQTAA
>Mature_104_residues
MLRGPVEFGNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTR
RHSGLDYRTPQQVHDEYLKRQTAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1788405, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787263, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1786753, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1786570, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1786490, Length=90, Percent_Identity=41.1111111111111, Blast_Score=72, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 12097; Mature: 12097

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRGPVEFGNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPT
CCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
REHARRDIARYIELRYNTTRRHSGLDYRTPQQVHDEYLKRQTAA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRGPVEFGNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPT
CCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
REHARRDIARYIELRYNTTRRHSGLDYRTPQQVHDEYLKRQTAA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]