| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316030
Identifier: 158316030
GI number: 158316030
Start: 5061441
End: 5062445
Strand: Reverse
Name: 158316030
Synonym: Franean1_4248
Alternate gene names: NA
Gene position: 5062445-5061441 (Counterclockwise)
Preceding gene: 158316031
Following gene: 158316029
Centisome position: 56.36
GC content: 69.65
Gene sequence:
>1005_bases GTGTCCGCCCAAAGCCCGCGAGACAGCCGATCGCAGGGAGCGGACGTCGAACTGGTCCGGCTTGGGCCGGCGGCAACACG GGTGCGGCTGCCAGCCCTGGCACCTGGTGCGAGCTGGACGTGTGACGTACGCATCCACGCGCTGCAACGTGGCGTGCACC GGCTGAGCCCCGCGACGCTGCGCCGGGGCGACCGGTTCGGTCTACTGCTCCGATCCGAGCCCACGGGTGGTGGAGAGGCC GTCGTCCGGGTCTATCCGGAGATCCTTGACCTGCAGACGCCGACCTCCGACCTCGGGATGATCGAGAACGGGGTGGCGCG GCTACTCGATCATGGGACGGAGTTCCACGGGCTTCGCGCCTATGTACAGGGCGACGACCTCCGCCAGGTCCATGCCGCCT CCAGCGCCCGCACCGGGCGGTTGCTTGTCCGGGAGAACGCTGACGACTCGGTCTCGTCGACCTCCTGGGTCCTGTTCGAC GATCGTCGGAGTTCCTACCCGGCTGATGCTGATGGTGATCAGGCGTATGAGGACGGACTCACCTGCGCCGTGTCCATTGC CGCCAGCGCGGTGCGCGCTGGCTCTGGCGGTGCCCTCGGCACGCTGTCCGGCCGTACGGTGACGCACTACGGGGACCCCG CTGATCACTGCCGGATTCTCGACATGGCGTCGGAAGCGGATCCGGTGGTCACCGGAGACCCCGCGGCCGGCAGCCGGGTC GCGCGGTTCCTCGCCACAGTGCGCGAGAGCGCCACGGTGTGGACCGCGGGGACAGCGGTGGTGGTGACCGGAACGGAGAG CCCGGACGCCCTCGATGTGGCAGCCGGCCTGACTGGTCTGTGTGCGCCGGTCATCGTCGTGCGGGTTGGACGTGGGCCGA CCTCGGTGCGGATGACTCCTGAACCAGGCCTGCTCATTCTCTCCGTCGGCGACACCGAAGAAGTCGTCCGGGCATGGCCG CGGCTGTTGGGCGCGCTGACCGGGCAGGCGCGGTGGGTTGGGTGA
Upstream 100 bases:
>100_bases TCTCGCTGCGGCTCACGCGGTTCGCGGACGCCCTACCGCGGAGCTGTCGCTGACACCGACACCGCCGACGGCCACCCGCG GCGAATGGGTCACGATCACC
Downstream 100 bases:
>100_bases GCGTGACCTGGAGGGTAGCGGCCCTACGACGACTGGAGCGGCTCCGGACTCTGCGGATCGTCTCACGGGGGCGTCCACCG CGGGCACCGGAGTCCAACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MSAQSPRDSRSQGADVELVRLGPAATRVRLPALAPGASWTCDVRIHALQRGVHRLSPATLRRGDRFGLLLRSEPTGGGEA VVRVYPEILDLQTPTSDLGMIENGVARLLDHGTEFHGLRAYVQGDDLRQVHAASSARTGRLLVRENADDSVSSTSWVLFD DRRSSYPADADGDQAYEDGLTCAVSIAASAVRAGSGGALGTLSGRTVTHYGDPADHCRILDMASEADPVVTGDPAAGSRV ARFLATVRESATVWTAGTAVVVTGTESPDALDVAAGLTGLCAPVIVVRVGRGPTSVRMTPEPGLLILSVGDTEEVVRAWP RLLGALTGQARWVG
Sequences:
>Translated_334_residues MSAQSPRDSRSQGADVELVRLGPAATRVRLPALAPGASWTCDVRIHALQRGVHRLSPATLRRGDRFGLLLRSEPTGGGEA VVRVYPEILDLQTPTSDLGMIENGVARLLDHGTEFHGLRAYVQGDDLRQVHAASSARTGRLLVRENADDSVSSTSWVLFD DRRSSYPADADGDQAYEDGLTCAVSIAASAVRAGSGGALGTLSGRTVTHYGDPADHCRILDMASEADPVVTGDPAAGSRV ARFLATVRESATVWTAGTAVVVTGTESPDALDVAAGLTGLCAPVIVVRVGRGPTSVRMTPEPGLLILSVGDTEEVVRAWP RLLGALTGQARWVG >Mature_333_residues SAQSPRDSRSQGADVELVRLGPAATRVRLPALAPGASWTCDVRIHALQRGVHRLSPATLRRGDRFGLLLRSEPTGGGEAV VRVYPEILDLQTPTSDLGMIENGVARLLDHGTEFHGLRAYVQGDDLRQVHAASSARTGRLLVRENADDSVSSTSWVLFDD RRSSYPADADGDQAYEDGLTCAVSIAASAVRAGSGGALGTLSGRTVTHYGDPADHCRILDMASEADPVVTGDPAAGSRVA RFLATVRESATVWTAGTAVVVTGTESPDALDVAAGLTGLCAPVIVVRVGRGPTSVRMTPEPGLLILSVGDTEEVVRAWPR LLGALTGQARWVG
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35032; Mature: 34901
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQSPRDSRSQGADVELVRLGPAATRVRLPALAPGASWTCDVRIHALQRGVHRLSPATL CCCCCCCCCCCCCCCEEEEEECCCHHEEECCCCCCCCCEEEEEEHHHHHHHHHHCCHHHH RRGDRFGLLLRSEPTGGGEAVVRVYPEILDLQTPTSDLGMIENGVARLLDHGTEFHGLRA CCCCCEEEEEECCCCCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE YVQGDDLRQVHAASSARTGRLLVRENADDSVSSTSWVLFDDRRSSYPADADGDQAYEDGL EECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHCCC TCAVSIAASAVRAGSGGALGTLSGRTVTHYGDPADHCRILDMASEADPVVTGDPAAGSRV EEEEHHHHHHHHCCCCCCEEECCCCEEEECCCCHHHEEEEECCCCCCCEEECCCCCHHHH ARFLATVRESATVWTAGTAVVVTGTESPDALDVAAGLTGLCAPVIVVRVGRGPTSVRMTP HHHHHHHHHCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCCCEEEECC EPGLLILSVGDTEEVVRAWPRLLGALTGQARWVG CCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECC >Mature Secondary Structure SAQSPRDSRSQGADVELVRLGPAATRVRLPALAPGASWTCDVRIHALQRGVHRLSPATL CCCCCCCCCCCCCCEEEEEECCCHHEEECCCCCCCCCEEEEEEHHHHHHHHHHCCHHHH RRGDRFGLLLRSEPTGGGEAVVRVYPEILDLQTPTSDLGMIENGVARLLDHGTEFHGLRA CCCCCEEEEEECCCCCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE YVQGDDLRQVHAASSARTGRLLVRENADDSVSSTSWVLFDDRRSSYPADADGDQAYEDGL EECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHCCC TCAVSIAASAVRAGSGGALGTLSGRTVTHYGDPADHCRILDMASEADPVVTGDPAAGSRV EEEEHHHHHHHHCCCCCCEEECCCCEEEECCCCHHHEEEEECCCCCCCEEECCCCCHHHH ARFLATVRESATVWTAGTAVVVTGTESPDALDVAAGLTGLCAPVIVVRVGRGPTSVRMTP HHHHHHHHHCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHEEEEEECCCCCEEEECC EPGLLILSVGDTEEVVRAWPRLLGALTGQARWVG CCCEEEEEECCHHHHHHHHHHHHHHHCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA