| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gsiB [H]
Identifier: 158315996
GI number: 158315996
Start: 5019629
End: 5021074
Strand: Reverse
Name: gsiB [H]
Synonym: Franean1_4214
Alternate gene names: 158315996
Gene position: 5021074-5019629 (Counterclockwise)
Preceding gene: 158315997
Following gene: 158315994
Centisome position: 55.9
GC content: 67.63
Gene sequence:
>1446_bases GTGGCGGGCGGCCACGGGCGAATCCTGACACTGAGCGATCTCCGCAGCCTGGACCCGGGGACGATCGGCAACGCCTATGC GAGCACAGGTGTCGTGGGTAACGCCCTGTACGGAACGTTGATGACCAACGACGAGGCGGGCGAGATCCGCTACCAGATGG CCGAGTCCTTCACCACGACGGACAACGGCCGCACCTTCACCCTGAAGCTGCGGCCCGGGCTGGTCTTCTCCGACGGCACT CCGCTCAATGCCGAAGCGGTGAAGTTCAACTGGGATCGGGTCAAGGATCCGGCCACCGGCTCTCCCCACCGCTCGGAGGC GTCGATGATCGCCTCGTCCGAGGTGGTGGACGACGTCACGCTGACCGCCACGATGGTCACCCAGGTGCCCAAGTATGCCC AGTCCGTCGTCACCTCGTCACTGAACTGGATCGCCTCGCCCGCGGCGCTGCGGAAGGGCACCGCGGCCTTCGACGCCGCC CCGATCGGCGCCGGCCCGTTCACGCTGAAGAGCTGGACCCGCCAGGCCGCCATGGAGCTGGTCAAGAACCCCCGCTACTG GGACGCCCCCAAGCCGTACCTGGACACCCTCACCTTCCAGGCCGCGCTCGACTCCAACCAGCGTTACAACACCCTGCAGA CCGGGGGCGCGGACGTCGCCGTCGAGTCGAATCCCGTCAACTTCGACAAGGCCGACAAGGCCGGCCTGCCGAACACCGTG CTGGAGCTCAGCGGCGGCCTCTTCATGGCGATGAACACCCGCAGGGCGCCGTTCGACGACGTCCGCGCACGGCAGGCCGT CGCCGGGGCACTTGACCTGGACGCGCTGAACCTCGCCGCCTACAACGGAACCGGCACACCCGTCGACACGCTGTTCAGCA AGGCCTCGCCCTTCTACTCGGACACGCCGCTGCGCAAGGCGGACAAGGCCACCGCCCAGCGACTGTTCGACGAGCTGGCC GCGGAAGGCAAGCCGGTGTCCTTCGCCGTCTCCACCGCCCCCACCTCGGAGAGTAGGACGACGGCGGAGAACATCCAGGC CCAGCTCGGCACGTTCAAAAACGTCAAGGTCCAGGTCAAGATTATCGAGGTTGCCGACGTCGTCTCGCTGCGCACGACGC ATGACTTCGACGCGACCACGTCGTCAGCGTTCTTCCAGGACCCCGAACCACGGCTGTGGACGGCCTTCAGCGGCGACTCG CCGGCGAACCTGTCCGGGATCGCCGACAAGGCGCTCAACGACGCCCTGCTGGCGGGGCGGACAGGTACATCGGAACAGGA CCGCGAGAAGGCCTACGACACGGTCCAGCAGCGCCTCACCGAGCTGGCCCCGGTGGTCTTCTTCACGCGAGCGGAGCCGG GCGCCATCGCCGGCAAGGACGTCGGCGGCCTCGTGCAGTACGGCCTCGGCTCGCTCCTGCCCGAGGAACTCTGGATCCAG AAGTAG
Upstream 100 bases:
>100_bases ACTGGCCACGGCTGTTACATGTTGCGCCGCCCTTCTTTTAGGGGCCTGTGGCGGAGGTGGCGATTCCGCCAGCCCGTCCG CGGGTGCCTCCGGCAAGCCA
Downstream 100 bases:
>100_bases CCGCCCGCCCCGGACGTCGACCTGACGACTCAGTCCGGGTGCTGAGATCTCGAGATCCTGGGGAAAGATCGAACGGAGAG ATTTTCGACGGGAAACAGGT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MAGGHGRILTLSDLRSLDPGTIGNAYASTGVVGNALYGTLMTNDEAGEIRYQMAESFTTTDNGRTFTLKLRPGLVFSDGT PLNAEAVKFNWDRVKDPATGSPHRSEASMIASSEVVDDVTLTATMVTQVPKYAQSVVTSSLNWIASPAALRKGTAAFDAA PIGAGPFTLKSWTRQAAMELVKNPRYWDAPKPYLDTLTFQAALDSNQRYNTLQTGGADVAVESNPVNFDKADKAGLPNTV LELSGGLFMAMNTRRAPFDDVRARQAVAGALDLDALNLAAYNGTGTPVDTLFSKASPFYSDTPLRKADKATAQRLFDELA AEGKPVSFAVSTAPTSESRTTAENIQAQLGTFKNVKVQVKIIEVADVVSLRTTHDFDATTSSAFFQDPEPRLWTAFSGDS PANLSGIADKALNDALLAGRTGTSEQDREKAYDTVQQRLTELAPVVFFTRAEPGAIAGKDVGGLVQYGLGSLLPEELWIQ K
Sequences:
>Translated_481_residues MAGGHGRILTLSDLRSLDPGTIGNAYASTGVVGNALYGTLMTNDEAGEIRYQMAESFTTTDNGRTFTLKLRPGLVFSDGT PLNAEAVKFNWDRVKDPATGSPHRSEASMIASSEVVDDVTLTATMVTQVPKYAQSVVTSSLNWIASPAALRKGTAAFDAA PIGAGPFTLKSWTRQAAMELVKNPRYWDAPKPYLDTLTFQAALDSNQRYNTLQTGGADVAVESNPVNFDKADKAGLPNTV LELSGGLFMAMNTRRAPFDDVRARQAVAGALDLDALNLAAYNGTGTPVDTLFSKASPFYSDTPLRKADKATAQRLFDELA AEGKPVSFAVSTAPTSESRTTAENIQAQLGTFKNVKVQVKIIEVADVVSLRTTHDFDATTSSAFFQDPEPRLWTAFSGDS PANLSGIADKALNDALLAGRTGTSEQDREKAYDTVQQRLTELAPVVFFTRAEPGAIAGKDVGGLVQYGLGSLLPEELWIQ K >Mature_480_residues AGGHGRILTLSDLRSLDPGTIGNAYASTGVVGNALYGTLMTNDEAGEIRYQMAESFTTTDNGRTFTLKLRPGLVFSDGTP LNAEAVKFNWDRVKDPATGSPHRSEASMIASSEVVDDVTLTATMVTQVPKYAQSVVTSSLNWIASPAALRKGTAAFDAAP IGAGPFTLKSWTRQAAMELVKNPRYWDAPKPYLDTLTFQAALDSNQRYNTLQTGGADVAVESNPVNFDKADKAGLPNTVL ELSGGLFMAMNTRRAPFDDVRARQAVAGALDLDALNLAAYNGTGTPVDTLFSKASPFYSDTPLRKADKATAQRLFDELAA EGKPVSFAVSTAPTSESRTTAENIQAQLGTFKNVKVQVKIIEVADVVSLRTTHDFDATTSSAFFQDPEPRLWTAFSGDSP ANLSGIADKALNDALLAGRTGTSEQDREKAYDTVQQRLTELAPVVFFTRAEPGAIAGKDVGGLVQYGLGSLLPEELWIQK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=363, Percent_Identity=28.9256198347107, Blast_Score=135, Evalue=6e-33, Organism=Escherichia coli, GI1789966, Length=466, Percent_Identity=26.1802575107296, Blast_Score=106, Evalue=4e-24, Organism=Escherichia coli, GI1787495, Length=489, Percent_Identity=24.5398773006135, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1789397, Length=467, Percent_Identity=24.1970021413276, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1789887, Length=471, Percent_Identity=23.7791932059448, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI87081878, Length=452, Percent_Identity=25.2212389380531, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787762, Length=439, Percent_Identity=22.5512528473804, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87082063, Length=314, Percent_Identity=23.8853503184713, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 51438; Mature: 51307
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGGHGRILTLSDLRSLDPGTIGNAYASTGVVGNALYGTLMTNDEAGEIRYQMAESFTTT CCCCCCCEEEHHHHCCCCCCCCCCHHHHCCCCCHHHEEEEEECCCCCHHHHHHHHHCEEC DNGRTFTLKLRPGLVFSDGTPLNAEAVKFNWDRVKDPATGSPHRSEASMIASSEVVDDVT CCCEEEEEEECCCEEECCCCCCCCEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH LTATMVTQVPKYAQSVVTSSLNWIASPAALRKGTAAFDAAPIGAGPFTLKSWTRQAAMEL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH VKNPRYWDAPKPYLDTLTFQAALDSNQRYNTLQTGGADVAVESNPVNFDKADKAGLPNTV HCCCCCCCCCCCHHHHEEEEEHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCHHH LELSGGLFMAMNTRRAPFDDVRARQAVAGALDLDALNLAAYNGTGTPVDTLFSKASPFYS HHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCCCC DTPLRKADKATAQRLFDELAAEGKPVSFAVSTAPTSESRTTAENIQAQLGTFKNVKVQVK CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE IIEVADVVSLRTTHDFDATTSSAFFQDPEPRLWTAFSGDSPANLSGIADKALNDALLAGR EEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC TGTSEQDREKAYDTVQQRLTELAPVVFFTRAEPGAIAGKDVGGLVQYGLGSLLPEELWIQ CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHCC K C >Mature Secondary Structure AGGHGRILTLSDLRSLDPGTIGNAYASTGVVGNALYGTLMTNDEAGEIRYQMAESFTTT CCCCCCEEEHHHHCCCCCCCCCCHHHHCCCCCHHHEEEEEECCCCCHHHHHHHHHCEEC DNGRTFTLKLRPGLVFSDGTPLNAEAVKFNWDRVKDPATGSPHRSEASMIASSEVVDDVT CCCEEEEEEECCCEEECCCCCCCCEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH LTATMVTQVPKYAQSVVTSSLNWIASPAALRKGTAAFDAAPIGAGPFTLKSWTRQAAMEL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH VKNPRYWDAPKPYLDTLTFQAALDSNQRYNTLQTGGADVAVESNPVNFDKADKAGLPNTV HCCCCCCCCCCCHHHHEEEEEHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCHHH LELSGGLFMAMNTRRAPFDDVRARQAVAGALDLDALNLAAYNGTGTPVDTLFSKASPFYS HHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCCCC DTPLRKADKATAQRLFDELAAEGKPVSFAVSTAPTSESRTTAENIQAQLGTFKNVKVQVK CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE IIEVADVVSLRTTHDFDATTSSAFFQDPEPRLWTAFSGDSPANLSGIADKALNDALLAGR EEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC TGTSEQDREKAYDTVQQRLTELAPVVFFTRAEPGAIAGKDVGGLVQYGLGSLLPEELWIQ CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA