| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158315934
Identifier: 158315934
GI number: 158315934
Start: 4932356
End: 4933591
Strand: Reverse
Name: 158315934
Synonym: Franean1_4152
Alternate gene names: NA
Gene position: 4933591-4932356 (Counterclockwise)
Preceding gene: 158315935
Following gene: 158315932
Centisome position: 54.93
GC content: 68.69
Gene sequence:
>1236_bases ATGACCCCCCTGCATGCCTTCCCCCTGGAGCCCGCCCCGATCCATGTGTCCGACGACGTCCTCGATGACCTGCGCGCCCG TCTCACCCTGACCCGTCCGCCGCTGGACGAGGGGAATGAGGACTGGTCCTACGGCGTCCCGGGCAGCTATCTGCGTGAGC TGGTCGTCTACTGGCGGGACGGCTACGACTGGCGCAAGGCCGAGGCCGCCATCAACGCCTACGAGCACTACCAGGTGAGC GTCGCCGGTGTCCCGGTGCACTTCATGCGCAGGCCCGGCCGCGGCCCCCGCCCGATTCCGTTGATCCTCACCCACGGCTG GCCGTGGACGTTCTGGCACTGGTCGAAGGTGATCGACCCGCTCGCCGACCCGGCCACGTTCGGCGGTGACCCCACCGACG CGTTCGACGTCCTCGTGCCGTCCCTGCCCGGCTTCGGTTTCCCTGGCCCGCTCACCAGCTTTTCCGACGTCAACTTCTGG AAGGTCTCCGACCTCTGGCACACCCTGATGACCGAGACCCTGGGATACGAGAAGTACGCCGCCGGGGGCTGCGACATCGG CGGGATCGTCTCCAGCCAGCTCGGCCACAAGTACGCCGACGAGCTGTACGGCATCCACATCGGCTCCGGGCTGCCGCTCG ACTTCTTCACCGGTCCCCGCGCCTGGGACTTCGCCCGGAACCGGCCCCTCACCGACGACCAGCCCGCCGACGTCCGCGCC CGGATCATCGAGCTGGACCACCGCTCGGCGTCCCACCTCGCCGTGCACATGCTCGACGGCGCCACCCTGGCCCACGGGCT GAGCGACTCACCCGCCGGACTGCTCGCCTGGCTGCTGGAACGCTGGAACGCCTGGAGCGACAACGGCGGCGACGTCGAGT CCGTCTTCACCAAGGACGACCTGCTCACCCACGCCACGATCTACTGGGTGAACAACTCCATCGCCACGTCGATGCGTTAC TACACCAACGCCAACCGCTACCCCTGGGCTCCTGCCCACGACCGCACCCCGGTCGTGCAGGCCCCGGTCGGCCTCACCTT CGTCACCTACGAGAACCCGCCCGGCATCCACACCGCAGACGAGCGTGTCCAGGCGTTCAAGACCGGCCCGCAGGCCGACT GGTTCAACCACGTCAACGTCAACGCCCACGACCACGGCGGCCACTTCATCCCCTGGGAGAATCCCGACGCCTGGGTGAGC GACCTGCGACGCACCTTCCACGGCCGCAGGCCCTGA
Upstream 100 bases:
>100_bases AACGGCCCGGCGAGCATCTCCAAAGCGATGCCGTGCGCGGTGAGGTGGTCGGCGAGCGCGGTCAGTTCGACAGAGTCGCG TCCGATAGGAGAATCACGCC
Downstream 100 bases:
>100_bases AGGCTCGTCTTCAGACAGGTAGCGGGCGGCGTAGATCGTGCGTCGGAGAGCCCCGTATTCCTTGAGCGCCGCGGCCAGGG CGTTCTGCCGGCCGGAGGCT
Product: epocide hydrolase domain-containing protein
Products: NA
Alternate protein names: Epoxide hydratase [H]
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MTPLHAFPLEPAPIHVSDDVLDDLRARLTLTRPPLDEGNEDWSYGVPGSYLRELVVYWRDGYDWRKAEAAINAYEHYQVS VAGVPVHFMRRPGRGPRPIPLILTHGWPWTFWHWSKVIDPLADPATFGGDPTDAFDVLVPSLPGFGFPGPLTSFSDVNFW KVSDLWHTLMTETLGYEKYAAGGCDIGGIVSSQLGHKYADELYGIHIGSGLPLDFFTGPRAWDFARNRPLTDDQPADVRA RIIELDHRSASHLAVHMLDGATLAHGLSDSPAGLLAWLLERWNAWSDNGGDVESVFTKDDLLTHATIYWVNNSIATSMRY YTNANRYPWAPAHDRTPVVQAPVGLTFVTYENPPGIHTADERVQAFKTGPQADWFNHVNVNAHDHGGHFIPWENPDAWVS DLRRTFHGRRP
Sequences:
>Translated_411_residues MTPLHAFPLEPAPIHVSDDVLDDLRARLTLTRPPLDEGNEDWSYGVPGSYLRELVVYWRDGYDWRKAEAAINAYEHYQVS VAGVPVHFMRRPGRGPRPIPLILTHGWPWTFWHWSKVIDPLADPATFGGDPTDAFDVLVPSLPGFGFPGPLTSFSDVNFW KVSDLWHTLMTETLGYEKYAAGGCDIGGIVSSQLGHKYADELYGIHIGSGLPLDFFTGPRAWDFARNRPLTDDQPADVRA RIIELDHRSASHLAVHMLDGATLAHGLSDSPAGLLAWLLERWNAWSDNGGDVESVFTKDDLLTHATIYWVNNSIATSMRY YTNANRYPWAPAHDRTPVVQAPVGLTFVTYENPPGIHTADERVQAFKTGPQADWFNHVNVNAHDHGGHFIPWENPDAWVS DLRRTFHGRRP >Mature_410_residues TPLHAFPLEPAPIHVSDDVLDDLRARLTLTRPPLDEGNEDWSYGVPGSYLRELVVYWRDGYDWRKAEAAINAYEHYQVSV AGVPVHFMRRPGRGPRPIPLILTHGWPWTFWHWSKVIDPLADPATFGGDPTDAFDVLVPSLPGFGFPGPLTSFSDVNFWK VSDLWHTLMTETLGYEKYAAGGCDIGGIVSSQLGHKYADELYGIHIGSGLPLDFFTGPRAWDFARNRPLTDDQPADVRAR IIELDHRSASHLAVHMLDGATLAHGLSDSPAGLLAWLLERWNAWSDNGGDVESVFTKDDLLTHATIYWVNNSIATSMRYY TNANRYPWAPAHDRTPVVQAPVGLTFVTYENPPGIHTADERVQAFKTGPQADWFNHVNVNAHDHGGHFIPWENPDAWVSD LRRTFHGRRP
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S33 family [H]
Homologues:
Organism=Homo sapiens, GI4503583, Length=414, Percent_Identity=27.7777777777778, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI209862837, Length=414, Percent_Identity=27.7777777777778, Blast_Score=182, Evalue=5e-46, Organism=Caenorhabditis elegans, GI17564944, Length=341, Percent_Identity=29.9120234604106, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI193207462, Length=350, Percent_Identity=22, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24655327, Length=420, Percent_Identity=28.0952380952381, Blast_Score=138, Evalue=6e-33, Organism=Drosophila melanogaster, GI20130139, Length=413, Percent_Identity=26.1501210653753, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI19922580, Length=353, Percent_Identity=26.628895184136, Blast_Score=100, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =3.3.2.10 [H]
Molecular weight: Translated: 46154; Mature: 46023
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLHAFPLEPAPIHVSDDVLDDLRARLTLTRPPLDEGNEDWSYGVPGSYLRELVVYWRD CCCCCCCCCCCCCEECCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC GYDWRKAEAAINAYEHYQVSVAGVPVHFMRRPGRGPRPIPLILTHGWPWTFWHWSKVIDP CCCHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHH LADPATFGGDPTDAFDVLVPSLPGFGFPGPLTSFSDVNFWKVSDLWHTLMTETLGYEKYA HCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHC AGGCDIGGIVSSQLGHKYADELYGIHIGSGLPLDFFTGPRAWDFARNRPLTDDQPADVRA CCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHCCCCCCHHHHCCCCCCCCCCCCCEE RIIELDHRSASHLAVHMLDGATLAHGLSDSPAGLLAWLLERWNAWSDNGGDVESVFTKDD EEEEECCCCCCEEEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH LLTHATIYWVNNSIATSMRYYTNANRYPWAPAHDRTPVVQAPVGLTFVTYENPPGIHTAD HHEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCHH ERVQAFKTGPQADWFNHVNVNAHDHGGHFIPWENPDAWVSDLRRTFHGRRP HHHHHHHCCCCCCCCCEEECCEECCCCCCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure TPLHAFPLEPAPIHVSDDVLDDLRARLTLTRPPLDEGNEDWSYGVPGSYLRELVVYWRD CCCCCCCCCCCCEECCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC GYDWRKAEAAINAYEHYQVSVAGVPVHFMRRPGRGPRPIPLILTHGWPWTFWHWSKVIDP CCCHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHH LADPATFGGDPTDAFDVLVPSLPGFGFPGPLTSFSDVNFWKVSDLWHTLMTETLGYEKYA HCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHC AGGCDIGGIVSSQLGHKYADELYGIHIGSGLPLDFFTGPRAWDFARNRPLTDDQPADVRA CCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCHHCCCCCCHHHHCCCCCCCCCCCCCEE RIIELDHRSASHLAVHMLDGATLAHGLSDSPAGLLAWLLERWNAWSDNGGDVESVFTKDD EEEEECCCCCCEEEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH LLTHATIYWVNNSIATSMRYYTNANRYPWAPAHDRTPVVQAPVGLTFVTYENPPGIHTAD HHEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCHH ERVQAFKTGPQADWFNHVNVNAHDHGGHFIPWENPDAWVSDLRRTFHGRRP HHHHHHHCCCCCCCCCEEECCEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226695 [H]