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The map label for this gene is ycdC [C]

Identifier: 158315828

GI number: 158315828

Start: 4821414

End: 4822100

Strand: Reverse

Name: ycdC [C]

Synonym: Franean1_4043

Alternate gene names: 158315828

Gene position: 4822100-4821414 (Counterclockwise)

Preceding gene: 158315842

Following gene: 158315827

Centisome position: 53.69

GC content: 69.29

Gene sequence:

>687_bases
TTGTCGACGGCCGCGCCGGTTGATCGCGAGAAGCCGAACGGGCCTCGCTCGCGCAAGGGCGCCGCGACGCGCGCACGGCT
GCTCGACGCGGCCAAGGCCGTCTTCGAGAAGGACGGTTTCCTCGAGGCCCGGATCTCGGACATCGCCGAGCAGGCCGGGC
TTTCCCACGGGTCGTTCTACCACTACTTCGACTCCAAGGAGCAGATCTTCCGCGAGGTCGCCATGGAGATGACGGACTTG
CTGAACGCTCCGCTGAGCACGTCGATCTTCCTGCCGTCCTCGACCGCGGTCCCCCGGGAGCGGATCAGGGCGGGCATCCG
CACCTACCTCGAGAGCTACCGCGCGGAGGCGCGGATCATCGGGGTGATCGAGCAGGTGTCCCGCTACGACGCCCATCTCA
CCGACGAGCGGTTCGAGCACCAGCAGCGCGACCGGGAGCGCGTCGTCGGCTCGATCCGGCAGCTACAGCTCCTCGGCCTG
GCGGATCCGGACGTCGACCCCGCGATCGCCGCGCACGCGCTCGGCGCGATGGTCTCCCGGTTCGCCGAGATGTGGTTCGT
TCAGGGGTTGGTCGACTGCGACTTCGACGAGGCCACCGACCAGCTCGCCAGACTTTTCGCGAGCGCGCTGCGGCTGCGCG
ACCGGCCGGACGAGGACGGCCGGCCCTCCCCCGCTTCCGCAAAGTAA

Upstream 100 bases:

>100_bases
ATACGGCACCGCGCCGAAACAGCACCGACACGGTCGGGCCGCCCGAATATCGCTCCGATATACCACACGGGCACGGATAC
CGCACGAATAGGAGAAGGAA

Downstream 100 bases:

>100_bases
GAGCTGCTTTCAGTTTGCGAGGTGCGTTCAGCCTGCGGGTGCGCTCGGGTCGCCAGGGGCTCGCAGCCCGCGAGTGTTCC
TCGGCCGAGGGCCCCCGCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Regulatory Protein TetR; Transcriptional Regulator TetR Family; Regulatory Protein; TetR Family Protein Transcriptional Regulator

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSTAAPVDREKPNGPRSRKGAATRARLLDAAKAVFEKDGFLEARISDIAEQAGLSHGSFYHYFDSKEQIFREVAMEMTDL
LNAPLSTSIFLPSSTAVPRERIRAGIRTYLESYRAEARIIGVIEQVSRYDAHLTDERFEHQQRDRERVVGSIRQLQLLGL
ADPDVDPAIAAHALGAMVSRFAEMWFVQGLVDCDFDEATDQLARLFASALRLRDRPDEDGRPSPASAK

Sequences:

>Translated_228_residues
MSTAAPVDREKPNGPRSRKGAATRARLLDAAKAVFEKDGFLEARISDIAEQAGLSHGSFYHYFDSKEQIFREVAMEMTDL
LNAPLSTSIFLPSSTAVPRERIRAGIRTYLESYRAEARIIGVIEQVSRYDAHLTDERFEHQQRDRERVVGSIRQLQLLGL
ADPDVDPAIAAHALGAMVSRFAEMWFVQGLVDCDFDEATDQLARLFASALRLRDRPDEDGRPSPASAK
>Mature_227_residues
STAAPVDREKPNGPRSRKGAATRARLLDAAKAVFEKDGFLEARISDIAEQAGLSHGSFYHYFDSKEQIFREVAMEMTDLL
NAPLSTSIFLPSSTAVPRERIRAGIRTYLESYRAEARIIGVIEQVSRYDAHLTDERFEHQQRDRERVVGSIRQLQLLGLA
DPDVDPAIAAHALGAMVSRFAEMWFVQGLVDCDFDEATDQLARLFASALRLRDRPDEDGRPSPASAK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25464; Mature: 25333

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAAPVDREKPNGPRSRKGAATRARLLDAAKAVFEKDGFLEARISDIAEQAGLSHGSFY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH
HYFDSKEQIFREVAMEMTDLLNAPLSTSIFLPSSTAVPRERIRAGIRTYLESYRAEARII
HHCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GVIEQVSRYDAHLTDERFEHQQRDRERVVGSIRQLQLLGLADPDVDPAIAAHALGAMVSR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
FAEMWFVQGLVDCDFDEATDQLARLFASALRLRDRPDEDGRPSPASAK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STAAPVDREKPNGPRSRKGAATRARLLDAAKAVFEKDGFLEARISDIAEQAGLSHGSFY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCH
HYFDSKEQIFREVAMEMTDLLNAPLSTSIFLPSSTAVPRERIRAGIRTYLESYRAEARII
HHCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GVIEQVSRYDAHLTDERFEHQQRDRERVVGSIRQLQLLGLADPDVDPAIAAHALGAMVSR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
FAEMWFVQGLVDCDFDEATDQLARLFASALRLRDRPDEDGRPSPASAK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA