| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315703
Identifier: 158315703
GI number: 158315703
Start: 4681202
End: 4682377
Strand: Reverse
Name: 158315703
Synonym: Franean1_3915
Alternate gene names: NA
Gene position: 4682377-4681202 (Counterclockwise)
Preceding gene: 158315706
Following gene: 158315702
Centisome position: 52.13
GC content: 66.41
Gene sequence:
>1176_bases ATGTCGATACCTTTAAAAGAGAGCGGCCTGTTCATCGTCGATGCGGACTCGCACTGGTCAGAGCCCCCGGATCTGTTCAC CAGGCGCGCACCGGCTGCATACCGTGACCGGGTGCCCCGCGTGGAGGATGTCGACGGCACCCCGATGTGGGTCTTTGACG GTAAGCCTGTCGGGCGTTTCAGCGCAGCCGGTGTCATCGGCCGCGACGGCCGCAAGGAGAGCGCGGACACCGCGCTGCAC CACTGGACGATCGACCAGGTCCACGTCGGCGCCTACGACCCGGCCGTCCGCCTGGGCGTGCTCGACGAGTGCGGCATCGA CGCGCAGATCATCTTTCCGAGCACGATCGGCCTCGGCGGCCAGGACCTGGGCGCGGCCAGTGACCCCGCGCTGACCCGGC TCTCGGTCGAGATCTACAACGACGCCATGGCCGAGATCCAGAGCGACTCGGGGAACCGGTTGTTACCCCTGCCGCTCATG CCGGCCTGGGACGTCGACCTGTGCGTCGCAGAGGCCCGCCGGGTCCACGCCCTCGGCGCACGCGGGGTCAACATGACCTC GGACCCGCAGGACCTGGGCGCCCCCGACCTCGCCAACCCGGCCTGGGACCCGTTCTGGGAGGTGTGCACAGAGCTGCAGC TGCCGGTCCACTTCCACATCGGGGCCAGCGTGACCACGATGACGTTCTACGGTAAGTACCCGTGGCCGTCACACGACAAC AACACCAAGCTCGCCATCGGCGGCACACTGCTGTTCATCGGGAACGCACGGGTGGTGACGAATCTGATCCTCTCCGGGAT CTTCGACCGGCACCCCGACCTGAAGACGGTGTCGGTGGAGAGCGGTGTCGGCTGGATCCCGTTCATCCTCGAGGCGTTGG ACTACGAGATGTCCGAGAATGCGCCCGAGGAGCTCGGCCGGATGCGCAAGCCGCCGTCCGAGTACTTCCGGAGCAACATC TACGCCACGTTCTGGTTCGAGAAGAACAGGAACAAGCTCCCGGCACTGATCGACGCGGTCGGCGAGGACAACATCCTCTT CGAGACGGACTTCCCCCACCCAACCTGCCTCTACCCTGACCCGCTGGGCACCGTCGAGCCGAAGCTGGCCACGTTGTCTC CGCAGGCCCGGGCGAAGATCCTGGGAGAGAACGCCCGCAGGCTGTACCGCCTCTGA
Upstream 100 bases:
>100_bases GATCGCCCAGGGCTGGCCCGTCTCACCGATCAGCTCGTAGGCGACCGACAGTCCGTTAACTGTTGCTCGTGTCATGGATC ACATATTAACATCGACATCT
Downstream 100 bases:
>100_bases ACCAGTCAGCCGGGGCAGCCGGGGGTCCTGCCCCGGTCGCCCCGGTGCTTCATGTCCAGACACAATCGGGCATCCGTACA GGATGCGAGTCAGGAGTAGG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidase; Amidohydrolase/Decarboxylase; Metal-Dependent Hydrolase; 5-Carboxyvanillate Decarboxylase; 2-Amino-3-Carboxymuconate-6- Semialdehyde Decarboxylase; Tryptophan 2 3-Dioxygenase; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Family Protein; Amidohydrolase 2 Protein; 2-Amino-3-Carboxymuconate-6-Semialdehyde Decarboxylase; Hydrolase; 2 3-Dihydroxybenzoic Acid Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.; 2-Amino-3-Carboxymuconate 6-Semialdehyde Decarboxylase
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MSIPLKESGLFIVDADSHWSEPPDLFTRRAPAAYRDRVPRVEDVDGTPMWVFDGKPVGRFSAAGVIGRDGRKESADTALH HWTIDQVHVGAYDPAVRLGVLDECGIDAQIIFPSTIGLGGQDLGAASDPALTRLSVEIYNDAMAEIQSDSGNRLLPLPLM PAWDVDLCVAEARRVHALGARGVNMTSDPQDLGAPDLANPAWDPFWEVCTELQLPVHFHIGASVTTMTFYGKYPWPSHDN NTKLAIGGTLLFIGNARVVTNLILSGIFDRHPDLKTVSVESGVGWIPFILEALDYEMSENAPEELGRMRKPPSEYFRSNI YATFWFEKNRNKLPALIDAVGEDNILFETDFPHPTCLYPDPLGTVEPKLATLSPQARAKILGENARRLYRL
Sequences:
>Translated_391_residues MSIPLKESGLFIVDADSHWSEPPDLFTRRAPAAYRDRVPRVEDVDGTPMWVFDGKPVGRFSAAGVIGRDGRKESADTALH HWTIDQVHVGAYDPAVRLGVLDECGIDAQIIFPSTIGLGGQDLGAASDPALTRLSVEIYNDAMAEIQSDSGNRLLPLPLM PAWDVDLCVAEARRVHALGARGVNMTSDPQDLGAPDLANPAWDPFWEVCTELQLPVHFHIGASVTTMTFYGKYPWPSHDN NTKLAIGGTLLFIGNARVVTNLILSGIFDRHPDLKTVSVESGVGWIPFILEALDYEMSENAPEELGRMRKPPSEYFRSNI YATFWFEKNRNKLPALIDAVGEDNILFETDFPHPTCLYPDPLGTVEPKLATLSPQARAKILGENARRLYRL >Mature_390_residues SIPLKESGLFIVDADSHWSEPPDLFTRRAPAAYRDRVPRVEDVDGTPMWVFDGKPVGRFSAAGVIGRDGRKESADTALHH WTIDQVHVGAYDPAVRLGVLDECGIDAQIIFPSTIGLGGQDLGAASDPALTRLSVEIYNDAMAEIQSDSGNRLLPLPLMP AWDVDLCVAEARRVHALGARGVNMTSDPQDLGAPDLANPAWDPFWEVCTELQLPVHFHIGASVTTMTFYGKYPWPSHDNN TKLAIGGTLLFIGNARVVTNLILSGIFDRHPDLKTVSVESGVGWIPFILEALDYEMSENAPEELGRMRKPPSEYFRSNIY ATFWFEKNRNKLPALIDAVGEDNILFETDFPHPTCLYPDPLGTVEPKLATLSPQARAKILGENARRLYRL
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43171; Mature: 43040
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPLKESGLFIVDADSHWSEPPDLFTRRAPAAYRDRVPRVEDVDGTPMWVFDGKPVGRF CCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCE SAAGVIGRDGRKESADTALHHWTIDQVHVGAYDPAVRLGVLDECGIDAQIIFPSTIGLGG ECCCEECCCCCCCCHHHHHHEEEECEEEECCCCCCEEEECHHHCCCCEEEEECCCCCCCC QDLGAASDPALTRLSVEIYNDAMAEIQSDSGNRLLPLPLMPAWDVDLCVAEARRVHALGA CCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC RGVNMTSDPQDLGAPDLANPAWDPFWEVCTELQLPVHFHIGASVTTMTFYGKYPWPSHDN CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEEEEECCCCCCCCC NTKLAIGGTLLFIGNARVVTNLILSGIFDRHPDLKTVSVESGVGWIPFILEALDYEMSEN CCEEEECEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCHHCCC APEELGRMRKPPSEYFRSNIYATFWFEKNRNKLPALIDAVGEDNILFETDFPHPTCLYPD CHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCEEEEECCCCCEEECCC PLGTVEPKLATLSPQARAKILGENARRLYRL CCCCCCCCCEECCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SIPLKESGLFIVDADSHWSEPPDLFTRRAPAAYRDRVPRVEDVDGTPMWVFDGKPVGRF CCCCCCCCEEEEECCCCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCE SAAGVIGRDGRKESADTALHHWTIDQVHVGAYDPAVRLGVLDECGIDAQIIFPSTIGLGG ECCCEECCCCCCCCHHHHHHEEEECEEEECCCCCCEEEECHHHCCCCEEEEECCCCCCCC QDLGAASDPALTRLSVEIYNDAMAEIQSDSGNRLLPLPLMPAWDVDLCVAEARRVHALGA CCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC RGVNMTSDPQDLGAPDLANPAWDPFWEVCTELQLPVHFHIGASVTTMTFYGKYPWPSHDN CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEEEEECCCCCCCCC NTKLAIGGTLLFIGNARVVTNLILSGIFDRHPDLKTVSVESGVGWIPFILEALDYEMSEN CCEEEECEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCHHCCC APEELGRMRKPPSEYFRSNIYATFWFEKNRNKLPALIDAVGEDNILFETDFPHPTCLYPD CHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCEEEEECCCCCEEECCC PLGTVEPKLATLSPQARAKILGENARRLYRL CCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA