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The map label for this gene is ycdC [C]

Identifier: 158315698

GI number: 158315698

Start: 4676131

End: 4676859

Strand: Reverse

Name: ycdC [C]

Synonym: Franean1_3910

Alternate gene names: 158315698

Gene position: 4676859-4676131 (Counterclockwise)

Preceding gene: 158315699

Following gene: 158315697

Centisome position: 52.07

GC content: 71.47

Gene sequence:

>729_bases
GTGACCAGGACCGGCGCTGGCGCCGGTCCTGGAGCCGGTGCCCGTGGCGGAGCCGGCGCCGGTGCCGCCACCAACAGCCG
TCCCGACGGTGGTGGCGGCCCCCGCTCGCGCCGCGGAGCCGAGACCAGGGCGCGCCTTGTCGAGGCCGCCAAGGCGGTCT
TCGAAGAGAAGGGCTACCACGACACGCGGGTGGCGGACATCGCCGAGCGCGCCAGCGTGTCGCACGGGTCCTTCTACCAC
TACTTCGACTCGAAGGACCAGATCTTCCGGGAGGTCGCGGCGGTCATCGACGCCGCCCTCAGCGCCGGGATGGCGATCAT
CCTCGCCCGCAACTCGAGCATGTCGCCGCACGAGCGGCTGACCGAAGCGATCCGGGTCCACTTCGAGGCGTACCGTGCCG
AGGCGCGGATCATGAGTGTGATCGAGCAGGTCTCCCGGCACGACGAGCAGGTCTACACCCTCTGGACCCAGCTGTTCGGC
CGTCACTCGGACGACGTCACCCACTCCATCGAGCAGCTCCAGCGCCACCGGCTCGCCGACCCCGTCCTCGACCCGGCCGT
CGCCGCCGCCGCTTTGGGCGCCATGACGTGGCGTTTCGCCGAGCAGTGGCTGGTGCAGGGCCAGCCCGAGTGCGGCTTCG
ACGTCGGCGTCGAGCAGATCACCCGGCTGTTCGTCAACGCGCTCCAGCTGCGCGACCCCGCGGAGCCGCCCCCGAGCGGG
AACGCATGA

Upstream 100 bases:

>100_bases
GAGCTGCGTGAGCTGCCCGTCCCCGAGTTCGCCCGCCGCGCCTACGAGACGACCGCCGGGTTCTGGCGATGACCTCGCGC
CGCCCACCCGGGACTCGCGC

Downstream 100 bases:

>100_bases
GCACGCCGATGACCGGCCTGCTGGACCTGACCGGCCGGGTGGCCATCGTCACCGGCGGCGGGACGGGCATCGGGGCGGCC
ACCGCGCGGCTGCTCGCCGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Regulatory Protein TetR; Transcriptional Regulator TetR Family; Regulatory Protein

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTRTGAGAGPGAGARGGAGAGAATNSRPDGGGGPRSRRGAETRARLVEAAKAVFEEKGYHDTRVADIAERASVSHGSFYH
YFDSKDQIFREVAAVIDAALSAGMAIILARNSSMSPHERLTEAIRVHFEAYRAEARIMSVIEQVSRHDEQVYTLWTQLFG
RHSDDVTHSIEQLQRHRLADPVLDPAVAAAALGAMTWRFAEQWLVQGQPECGFDVGVEQITRLFVNALQLRDPAEPPPSG
NA

Sequences:

>Translated_242_residues
MTRTGAGAGPGAGARGGAGAGAATNSRPDGGGGPRSRRGAETRARLVEAAKAVFEEKGYHDTRVADIAERASVSHGSFYH
YFDSKDQIFREVAAVIDAALSAGMAIILARNSSMSPHERLTEAIRVHFEAYRAEARIMSVIEQVSRHDEQVYTLWTQLFG
RHSDDVTHSIEQLQRHRLADPVLDPAVAAAALGAMTWRFAEQWLVQGQPECGFDVGVEQITRLFVNALQLRDPAEPPPSG
NA
>Mature_241_residues
TRTGAGAGPGAGARGGAGAGAATNSRPDGGGGPRSRRGAETRARLVEAAKAVFEEKGYHDTRVADIAERASVSHGSFYHY
FDSKDQIFREVAAVIDAALSAGMAIILARNSSMSPHERLTEAIRVHFEAYRAEARIMSVIEQVSRHDEQVYTLWTQLFGR
HSDDVTHSIEQLQRHRLADPVLDPAVAAAALGAMTWRFAEQWLVQGQPECGFDVGVEQITRLFVNALQLRDPAEPPPSGN
A

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26145; Mature: 26014

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTGAGAGPGAGARGGAGAGAATNSRPDGGGGPRSRRGAETRARLVEAAKAVFEEKGYH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
DTRVADIAERASVSHGSFYHYFDSKDQIFREVAAVIDAALSAGMAIILARNSSMSPHERL
HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
TEAIRVHFEAYRAEARIMSVIEQVSRHDEQVYTLWTQLFGRHSDDVTHSIEQLQRHRLAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PVLDPAVAAAALGAMTWRFAEQWLVQGQPECGFDVGVEQITRLFVNALQLRDPAEPPPSG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NA
CC
>Mature Secondary Structure 
TRTGAGAGPGAGARGGAGAGAATNSRPDGGGGPRSRRGAETRARLVEAAKAVFEEKGYH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
DTRVADIAERASVSHGSFYHYFDSKDQIFREVAAVIDAALSAGMAIILARNSSMSPHERL
HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
TEAIRVHFEAYRAEARIMSVIEQVSRHDEQVYTLWTQLFGRHSDDVTHSIEQLQRHRLAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PVLDPAVAAAALGAMTWRFAEQWLVQGQPECGFDVGVEQITRLFVNALQLRDPAEPPPSG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA