| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315592
Identifier: 158315592
GI number: 158315592
Start: 4509500
End: 4510954
Strand: Reverse
Name: 158315592
Synonym: Franean1_3801
Alternate gene names: NA
Gene position: 4510954-4509500 (Counterclockwise)
Preceding gene: 158315597
Following gene: 158315591
Centisome position: 50.22
GC content: 72.37
Gene sequence:
>1455_bases ATGGATCCGGTTCTCGTCCTGCGGGACACGCGGTTGCAGGTCCGTCCCGGGGACACCGCCCGGACCAGCGCGACCGTGCG CAACGCCGGTGATCTCGTCGAGCAGTACGCCCTCGACGTGCTCGGACCGGCCGCCGCCTGGGCGGAGGTCATCCCTCCCA CCATCTCGGTGGTCCGCCGCGGGGAGAGCACCGTCCAGATCCTGTTCCGGCCGCCGGTGGGGCCGACGACCCCGGCGGGC ACCGTGCCGTTCGCGCTGCGCTGCGTCTCCCGGGAGAACCCGGACAGCGTCGCGATCGCCGAGGGGGACCTCGCCGTCGG GGCGATCCACGAGATCGTCGCGTCGGTCACCCCGGCGGTGTCCCGCGGCCGGTGGTCCGGCCGGTGGACCGCGCGCTTCG AGAACCGCGGCACAGCACCGGCCCGGCTGCGGCTGTCCGCCTCCGACGAACGCCGGACGCTCGGTTTCGCGCTCGCCCCG GTGGAGCTGGAGATCCCCCCGGGCGAATCCGGTTACGCCTTCCTGAAGGCGCGAGCCGCCAAGCCGGCGCTGCTCGGTGC GCTGACCCGGCAGCAGGTGCGGCTGACCTACACCCGGGAGACCGCGCCCGACGAGCCGGTCGCCGAGGGTTTCGTGGATG TCTCCTTCGAACACGTCCCGGTGCTGTCCCGGGCGATGACGACGATCGCCGGCCTCGCCCTCGTGGGCGGAGCCGCCGCC GTAGTCCTGCTGAGCCAGTCGAGCCCGAAGGACGACACGGCGGCGCCGGGGGCCGCACCACCGGCACCGACCACCTTCTC CGCGGAGACCGGTGACGGCGGTGTCGTCCGCCTGAGCTGGTCGACGGTCCCCGGGGCGAAGGAGTACGGAATCCAGAAGC TGGTCGGGGACGAGGACGTCGCGCTCGACACCAAGAGGGTCGACGGGCAGCTGAACGCCTACGACTTCACGGGGCTCAAG GGCGGCGAGCGGACCTGCTTCCGACTGGTGGCGTTCAACGACTCCGGGGCTTCGCAGCCGTCCCCGCACGCCTGCGCCAC CGCCGGGATCACCCCGGAGCCGAGTCCCGGGCCCACGCCGACCGGACCCACCCCGACCGGACCAACGCCCACGTCCCCCA CACCCACGCCCGAGACGCCGAACCCGCAGCCCGGTCCCGGCACGCGGGAGCCGCGGGACGCCTACGTCGTCCTCAGTGTG TTCGCCAAGGACGACCAGGTCGCGAACGACGCGCAGAAACCTGCACAACGTGCCGGCGAGATCGGCTCGGCGCTCGGCGT CGACGTCGTCCTCGCCGACGCCGACAAGTCGACCCGGCTCTCCGCCCAGTACCCGGGCTTCCTCGTGATCTACGCGGACC GCTTCGTCACGCCCGAGGACGCCGGGAAGTTCTGCACCGACATGAGCGACAAGCTCAGCACCGTGAAGGCCATCTGCGTG GCGCAGAACAACTGA
Upstream 100 bases:
>100_bases TCACGCCGGCCGCATCGGCGGTCGTAGGTTCACCGCACACGGGCGTCCGGAGCATGGGGCCGCCCCGTACGGAGCGAAGC AGGGCCAGGGAGCGGAGGCG
Downstream 100 bases:
>100_bases GCGGGGGGGACATCCATGGCCTACGCGCTCGGCATCGACGTCGGCACGACGTTCACCGCCGGTGCCATCTGGCGGGATGG CCGGGCCGAGGCGTTCGGGC
Product: fibronectin type III domain-containing protein
Products: NA
Alternate protein names: Hydrolase; Fibronectin Type III Domain-Containing Protein
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MDPVLVLRDTRLQVRPGDTARTSATVRNAGDLVEQYALDVLGPAAAWAEVIPPTISVVRRGESTVQILFRPPVGPTTPAG TVPFALRCVSRENPDSVAIAEGDLAVGAIHEIVASVTPAVSRGRWSGRWTARFENRGTAPARLRLSASDERRTLGFALAP VELEIPPGESGYAFLKARAAKPALLGALTRQQVRLTYTRETAPDEPVAEGFVDVSFEHVPVLSRAMTTIAGLALVGGAAA VVLLSQSSPKDDTAAPGAAPPAPTTFSAETGDGGVVRLSWSTVPGAKEYGIQKLVGDEDVALDTKRVDGQLNAYDFTGLK GGERTCFRLVAFNDSGASQPSPHACATAGITPEPSPGPTPTGPTPTGPTPTSPTPTPETPNPQPGPGTREPRDAYVVLSV FAKDDQVANDAQKPAQRAGEIGSALGVDVVLADADKSTRLSAQYPGFLVIYADRFVTPEDAGKFCTDMSDKLSTVKAICV AQNN
Sequences:
>Translated_484_residues MDPVLVLRDTRLQVRPGDTARTSATVRNAGDLVEQYALDVLGPAAAWAEVIPPTISVVRRGESTVQILFRPPVGPTTPAG TVPFALRCVSRENPDSVAIAEGDLAVGAIHEIVASVTPAVSRGRWSGRWTARFENRGTAPARLRLSASDERRTLGFALAP VELEIPPGESGYAFLKARAAKPALLGALTRQQVRLTYTRETAPDEPVAEGFVDVSFEHVPVLSRAMTTIAGLALVGGAAA VVLLSQSSPKDDTAAPGAAPPAPTTFSAETGDGGVVRLSWSTVPGAKEYGIQKLVGDEDVALDTKRVDGQLNAYDFTGLK GGERTCFRLVAFNDSGASQPSPHACATAGITPEPSPGPTPTGPTPTGPTPTSPTPTPETPNPQPGPGTREPRDAYVVLSV FAKDDQVANDAQKPAQRAGEIGSALGVDVVLADADKSTRLSAQYPGFLVIYADRFVTPEDAGKFCTDMSDKLSTVKAICV AQNN >Mature_484_residues MDPVLVLRDTRLQVRPGDTARTSATVRNAGDLVEQYALDVLGPAAAWAEVIPPTISVVRRGESTVQILFRPPVGPTTPAG TVPFALRCVSRENPDSVAIAEGDLAVGAIHEIVASVTPAVSRGRWSGRWTARFENRGTAPARLRLSASDERRTLGFALAP VELEIPPGESGYAFLKARAAKPALLGALTRQQVRLTYTRETAPDEPVAEGFVDVSFEHVPVLSRAMTTIAGLALVGGAAA VVLLSQSSPKDDTAAPGAAPPAPTTFSAETGDGGVVRLSWSTVPGAKEYGIQKLVGDEDVALDTKRVDGQLNAYDFTGLK GGERTCFRLVAFNDSGASQPSPHACATAGITPEPSPGPTPTGPTPTGPTPTSPTPTPETPNPQPGPGTREPRDAYVVLSV FAKDDQVANDAQKPAQRAGEIGSALGVDVVLADADKSTRLSAQYPGFLVIYADRFVTPEDAGKFCTDMSDKLSTVKAICV AQNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50589; Mature: 50589
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPVLVLRDTRLQVRPGDTARTSATVRNAGDLVEQYALDVLGPAAAWAEVIPPTISVVRR CCCEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHC GESTVQILFRPPVGPTTPAGTVPFALRCVSRENPDSVAIAEGDLAVGAIHEIVASVTPAV CCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCHH SRGRWSGRWTARFENRGTAPARLRLSASDERRTLGFALAPVELEIPPGESGYAFLKARAA HCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCEEEEECCC KPALLGALTRQQVRLTYTRETAPDEPVAEGFVDVSFEHVPVLSRAMTTIAGLALVGGAAA CHHHHHHHHHCEEEEEEECCCCCCCHHHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEE VVLLSQSSPKDDTAAPGAAPPAPTTFSAETGDGGVVRLSWSTVPGAKEYGIQKLVGDEDV EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHCHHHHCCCCCC ALDTKRVDGQLNAYDFTGLKGGERTCFRLVAFNDSGASQPSPHACATAGITPEPSPGPTP EEEHHHCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC TGPTPTGPTPTSPTPTPETPNPQPGPGTREPRDAYVVLSVFAKDDQVANDAQKPAQRAGE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH IGSALGVDVVLADADKSTRLSAQYPGFLVIYADRFVTPEDAGKFCTDMSDKLSTVKAICV HCCCCCEEEEEECCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHEEEEEE AQNN ECCC >Mature Secondary Structure MDPVLVLRDTRLQVRPGDTARTSATVRNAGDLVEQYALDVLGPAAAWAEVIPPTISVVRR CCCEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHC GESTVQILFRPPVGPTTPAGTVPFALRCVSRENPDSVAIAEGDLAVGAIHEIVASVTPAV CCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCHH SRGRWSGRWTARFENRGTAPARLRLSASDERRTLGFALAPVELEIPPGESGYAFLKARAA HCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCEEEEECCC KPALLGALTRQQVRLTYTRETAPDEPVAEGFVDVSFEHVPVLSRAMTTIAGLALVGGAAA CHHHHHHHHHCEEEEEEECCCCCCCHHHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEE VVLLSQSSPKDDTAAPGAAPPAPTTFSAETGDGGVVRLSWSTVPGAKEYGIQKLVGDEDV EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHCHHHHCCCCCC ALDTKRVDGQLNAYDFTGLKGGERTCFRLVAFNDSGASQPSPHACATAGITPEPSPGPTP EEEHHHCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC TGPTPTGPTPTSPTPTPETPNPQPGPGTREPRDAYVVLSVFAKDDQVANDAQKPAQRAGE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH IGSALGVDVVLADADKSTRLSAQYPGFLVIYADRFVTPEDAGKFCTDMSDKLSTVKAICV HCCCCCEEEEEECCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHEEEEEE AQNN ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA