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The map label for this gene is ydbM [H]

Identifier: 158315549

GI number: 158315549

Start: 4449093

End: 4450349

Strand: Reverse

Name: ydbM [H]

Synonym: Franean1_3756

Alternate gene names: 158315549

Gene position: 4450349-4449093 (Counterclockwise)

Preceding gene: 158315550

Following gene: 158315548

Centisome position: 49.55

GC content: 74.46

Gene sequence:

>1257_bases
ATGACGACGGCGGTGCACACGCCCGAGCTGGTCCGGCGCGATCTGGTCCGGCCCGATCTGTCTCCGGAGGCGCTGGCGGC
CGTCACGGACGAGATCGCCGCGGTCGCGCCCGCGTACGACCGCACGGGCGAGATCCCGGTCAGGGGCCTGGAGGCCGCGC
ACCGCGCCGGGCTGCTGACCGCGACCGTGGGCACGCAGTACGGCGGACCCGGCCTCGGGCTCGTGGACACCGCCCGCATT
CTCGTCGCCCTCGGCGAGGGCGACGCGTCCGTCGCACTGCTCGCCGCCAACAACCTCGGCACCCACCAGGCGCAGGCGGC
CGCCGGCCACTGGCCCGAGGCGTACTACGCCGACTTCCTGCGGCGCAGCGCCGAGGGGCCGACGCTCGCCAACGCCGTCC
GCGCCGAGCCCGAGCTCGGCGCCCCGGCCCGCGGCGGCCTGCCGAAGACGACGGCGACCCGCACCGCCGACGGCTGGGCG
CTCAACGGCCACAAGGCGTACGCCACCGGCGGCACCGCGCTCGCCTACCACGTCGTGTGGGCGGTCGCCGACGAGCCTTC
CGGCGACCGCGCGCATCCCCGCGTCGGCCACGTGATCGTTCCGGCCGAACAGCCCGGCATCACCTGGGTCGACACGTGGG
ACCACCTCGGCCTGCGGGCGTCCAACACCCATGACGTCGTCTACGAGGACGTCCGGCTGCCGTTCGAGGCGTTCGTCGAG
ATCCCGCGCGGTCCCGACGGCGTGTACCGGGACCCCGCCGCGGCGGCGGGCATCGGCAGCTTCGGCCACCCGGCGCTCTA
CGTCGGCGTCGCCCGGGCCGCCCGCAGTGCCTTCGTGCGATTTGCCCGCGAGCGGGTGCCCACCGCCCTCGGCCGCCCGA
TCGCGACGACCGAACGCATCCAGGCCGTCGCGGGCGAGATCGACGCGCAGATCGCCCAGGCCGAGACCCTCCTGTTCGGC
GCGCTCCTGCGCGCCGAGGCCGGCGACACCGGTCACCTGCCGCAGCTGTCGCTGCTGAAGATCCAGATCGCCCGCTCGTC
GATCGCCGCGGTCAACACCGCGGTCGCCGCGCTGGGCAACCCGGCGCTCACCCGGCACCAGCCGTTCGAGCGCCTCCTCC
GTGACGTCCTGTGCGTGCGGGTCCACCCGCCGCAGGAGGACACCGCCCTGCTTGCCGCCGGCCGCCGGCTGCTCGACCAG
GAGTCGGCGATGACGACTGGTCCCATCCCTAGAGAAAGAAAAGAAACGAAACGATGA

Upstream 100 bases:

>100_bases
TGGCGCACCGCGCCGCCACCGGGCAGCGCGGCACTCTGCAGGACGCCCACCCCGGCGCCCTCACCCCCGGTTTCGACCCC
GCCACACTGGCCGGCCTGCG

Downstream 100 bases:

>100_bases
AACGACGCCTTCACTCGCACCGGCCTGGCCTGGCCGCCATGGCCCTTGCCGTCACGGCCGCGCTGGGCCTGGCTGCGTGT
GGCTCCTCCGGCGATGATGA

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTTAVHTPELVRRDLVRPDLSPEALAAVTDEIAAVAPAYDRTGEIPVRGLEAAHRAGLLTATVGTQYGGPGLGLVDTARI
LVALGEGDASVALLAANNLGTHQAQAAAGHWPEAYYADFLRRSAEGPTLANAVRAEPELGAPARGGLPKTTATRTADGWA
LNGHKAYATGGTALAYHVVWAVADEPSGDRAHPRVGHVIVPAEQPGITWVDTWDHLGLRASNTHDVVYEDVRLPFEAFVE
IPRGPDGVYRDPAAAAGIGSFGHPALYVGVARAARSAFVRFARERVPTALGRPIATTERIQAVAGEIDAQIAQAETLLFG
ALLRAEAGDTGHLPQLSLLKIQIARSSIAAVNTAVAALGNPALTRHQPFERLLRDVLCVRVHPPQEDTALLAAGRRLLDQ
ESAMTTGPIPRERKETKR

Sequences:

>Translated_418_residues
MTTAVHTPELVRRDLVRPDLSPEALAAVTDEIAAVAPAYDRTGEIPVRGLEAAHRAGLLTATVGTQYGGPGLGLVDTARI
LVALGEGDASVALLAANNLGTHQAQAAAGHWPEAYYADFLRRSAEGPTLANAVRAEPELGAPARGGLPKTTATRTADGWA
LNGHKAYATGGTALAYHVVWAVADEPSGDRAHPRVGHVIVPAEQPGITWVDTWDHLGLRASNTHDVVYEDVRLPFEAFVE
IPRGPDGVYRDPAAAAGIGSFGHPALYVGVARAARSAFVRFARERVPTALGRPIATTERIQAVAGEIDAQIAQAETLLFG
ALLRAEAGDTGHLPQLSLLKIQIARSSIAAVNTAVAALGNPALTRHQPFERLLRDVLCVRVHPPQEDTALLAAGRRLLDQ
ESAMTTGPIPRERKETKR
>Mature_417_residues
TTAVHTPELVRRDLVRPDLSPEALAAVTDEIAAVAPAYDRTGEIPVRGLEAAHRAGLLTATVGTQYGGPGLGLVDTARIL
VALGEGDASVALLAANNLGTHQAQAAAGHWPEAYYADFLRRSAEGPTLANAVRAEPELGAPARGGLPKTTATRTADGWAL
NGHKAYATGGTALAYHVVWAVADEPSGDRAHPRVGHVIVPAEQPGITWVDTWDHLGLRASNTHDVVYEDVRLPFEAFVEI
PRGPDGVYRDPAAAAGIGSFGHPALYVGVARAARSAFVRFARERVPTALGRPIATTERIQAVAGEIDAQIAQAETLLFGA
LLRAEAGDTGHLPQLSLLKIQIARSSIAAVNTAVAALGNPALTRHQPFERLLRDVLCVRVHPPQEDTALLAAGRRLLDQE
SAMTTGPIPRERKETKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI187960098, Length=394, Percent_Identity=25.6345177664975, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4557231, Length=394, Percent_Identity=25.6345177664975, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4557233, Length=356, Percent_Identity=23.314606741573, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI21361497, Length=381, Percent_Identity=24.4094488188976, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI4501859, Length=350, Percent_Identity=22.8571428571429, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17534899, Length=386, Percent_Identity=26.6839378238342, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=389, Percent_Identity=25.1928020565553, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17570075, Length=377, Percent_Identity=24.9336870026525, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17533517, Length=353, Percent_Identity=23.2294617563739, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=333, Percent_Identity=23.1231231231231, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646207, Length=356, Percent_Identity=25.8426966292135, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24660351, Length=381, Percent_Identity=26.509186351706, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281363737, Length=331, Percent_Identity=23.8670694864048, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356377, Length=273, Percent_Identity=25.2747252747253, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44183; Mature: 44052

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAVHTPELVRRDLVRPDLSPEALAAVTDEIAAVAPAYDRTGEIPVRGLEAAHRAGLLT
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEE
ATVGTQYGGPGLGLVDTARILVALGEGDASVALLAANNLGTHQAQAAAGHWPEAYYADFL
EECCCCCCCCCCCHHHHEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCHHHHHHHH
RRSAEGPTLANAVRAEPELGAPARGGLPKTTATRTADGWALNGHKAYATGGTALAYHVVW
HHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEEEEEEE
AVADEPSGDRAHPRVGHVIVPAEQPGITWVDTWDHLGLRASNTHDVVYEDVRLPFEAFVE
EEECCCCCCCCCCCCCEEEECCCCCCCEEEECHHHCCCCCCCCCCHHHHHHCCCHHHHHC
IPRGPDGVYRDPAAAAGIGSFGHPALYVGVARAARSAFVRFARERVPTALGRPIATTERI
CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAVAGEIDAQIAQAETLLFGALLRAEAGDTGHLPQLSLLKIQIARSSIAAVNTAVAALGN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEEEHHHHHHHHHHHHHHHHCC
PALTRHQPFERLLRDVLCVRVHPPQEDTALLAAGRRLLDQESAMTTGPIPRERKETKR
CCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
TTAVHTPELVRRDLVRPDLSPEALAAVTDEIAAVAPAYDRTGEIPVRGLEAAHRAGLLT
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEE
ATVGTQYGGPGLGLVDTARILVALGEGDASVALLAANNLGTHQAQAAAGHWPEAYYADFL
EECCCCCCCCCCCHHHHEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCHHHHHHHH
RRSAEGPTLANAVRAEPELGAPARGGLPKTTATRTADGWALNGHKAYATGGTALAYHVVW
HHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEEEEEEE
AVADEPSGDRAHPRVGHVIVPAEQPGITWVDTWDHLGLRASNTHDVVYEDVRLPFEAFVE
EEECCCCCCCCCCCCCEEEECCCCCCCEEEECHHHCCCCCCCCCCHHHHHHCCCHHHHHC
IPRGPDGVYRDPAAAAGIGSFGHPALYVGVARAARSAFVRFARERVPTALGRPIATTERI
CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QAVAGEIDAQIAQAETLLFGALLRAEAGDTGHLPQLSLLKIQIARSSIAAVNTAVAALGN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEEEHHHHHHHHHHHHHHHHCC
PALTRHQPFERLLRDVLCVRVHPPQEDTALLAAGRRLLDQESAMTTGPIPRERKETKR
CCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]