| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is linX [H]
Identifier: 158315379
GI number: 158315379
Start: 4241734
End: 4242540
Strand: Reverse
Name: linX [H]
Synonym: Franean1_3581
Alternate gene names: 158315379
Gene position: 4242540-4241734 (Counterclockwise)
Preceding gene: 158315401
Following gene: 158315378
Centisome position: 47.23
GC content: 72.37
Gene sequence:
>807_bases GTGGTAGCCGGGGCGGCTGGACGAGAAGGGGTCGCTCCGAAACTCGCAGGTCGACGCGCCCTGATCACGGGGGCCGGTAG CGGGATCGGACGGGCGACGGCCCTCCGGCTGGCCGCCGACGGAGCCGGCATCGCGGCGGTGGATGTCGACCTCGATGCGG CTGCCAAGGTCGCCGACGAGGCCACCGCCCTTGGGGTCGGCGCGTTGGCGCTGTCGGCTGACGTGGGCGACGAGGCGGCC GTGCGCGACGCCGTCTCGGCCGCAGTCGGCCACCTCGGCGGGCTCGACACGGTCGTCGCTGCCGCCGGGATCACCCGTGC CGGCCGGACCGACGAGACCACTCTGGACGCGTGGAACCTGATCATCAGGATCAATCTGACGGGCGTGTTCCTCACCCTGA AACACGCGCTGCCCCATCTCTGCGCCGCGGATGGCGGCGCCATCGTGACAATCGGTTCGGTGGCGTCGCTGGTAGCGGCC GGGCGGAGCTCCAGCTACGACGCGTCGAAGGGCGGCGTACTCCAGCTCACCCGGGCAGTCGCGGTGGAATACGCCGACCG GGGCGTACGCGCGAACTGCGTGTGTCCTGGGGTGGTCGCCACGAACCTGGCGGCCAACAGCCAGACGATCGCCGGCCCGC TGGACGCCGCCCGCGGCGACAACCCGCAACTGCGGGTGAGCGTGCCGATGGCGCGCCACGCCGACCCCGCAGAGATCGCC GGGGCCGTGGCGTTCCTGTGTTCCGACGACGCCTCCTTCATCACCGGTGCGGCGATCGCGGCCGACGGCGGCTTCACCGC CGTTTGA
Upstream 100 bases:
>100_bases ACGAACGGCGTGGTCGCGGCGGGGGCAGGCCACGGCCTACTGCGCTCGCCAACTAGTGAGAGGTAAGGACCATGAACATC GAGCCCGACGGGTTCCCGGC
Downstream 100 bases:
>100_bases CGATGGGCTGGACGGATGACGCGCTGAACCGCCCCGGGAAGGTTGGAGGCTCTAGTGCGGCGTAAACAAATGCTCGTTCC AGTGACACTGTTAGGCTAGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MVAGAAGREGVAPKLAGRRALITGAGSGIGRATALRLAADGAGIAAVDVDLDAAAKVADEATALGVGALALSADVGDEAA VRDAVSAAVGHLGGLDTVVAAAGITRAGRTDETTLDAWNLIIRINLTGVFLTLKHALPHLCAADGGAIVTIGSVASLVAA GRSSSYDASKGGVLQLTRAVAVEYADRGVRANCVCPGVVATNLAANSQTIAGPLDAARGDNPQLRVSVPMARHADPAEIA GAVAFLCSDDASFITGAAIAADGGFTAV
Sequences:
>Translated_268_residues MVAGAAGREGVAPKLAGRRALITGAGSGIGRATALRLAADGAGIAAVDVDLDAAAKVADEATALGVGALALSADVGDEAA VRDAVSAAVGHLGGLDTVVAAAGITRAGRTDETTLDAWNLIIRINLTGVFLTLKHALPHLCAADGGAIVTIGSVASLVAA GRSSSYDASKGGVLQLTRAVAVEYADRGVRANCVCPGVVATNLAANSQTIAGPLDAARGDNPQLRVSVPMARHADPAEIA GAVAFLCSDDASFITGAAIAADGGFTAV >Mature_268_residues MVAGAAGREGVAPKLAGRRALITGAGSGIGRATALRLAADGAGIAAVDVDLDAAAKVADEATALGVGALALSADVGDEAA VRDAVSAAVGHLGGLDTVVAAAGITRAGRTDETTLDAWNLIIRINLTGVFLTLKHALPHLCAADGGAIVTIGSVASLVAA GRSSSYDASKGGVLQLTRAVAVEYADRGVRANCVCPGVVATNLAANSQTIAGPLDAARGDNPQLRVSVPMARHADPAEIA GAVAFLCSDDASFITGAAIAADGGFTAV
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=32.7935222672065, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=35, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=29.8804780876494, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI5031737, Length=267, Percent_Identity=34.0823970037453, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI19923817, Length=274, Percent_Identity=28.8321167883212, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=31.1740890688259, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=28.6274509803922, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI7705925, Length=258, Percent_Identity=31.7829457364341, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI59889578, Length=199, Percent_Identity=31.6582914572864, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI33667109, Length=203, Percent_Identity=34.4827586206897, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI126723750, Length=262, Percent_Identity=28.6259541984733, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=30.5343511450382, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI210032110, Length=203, Percent_Identity=27.0935960591133, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI4504505, Length=221, Percent_Identity=29.8642533936652, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI7706318, Length=205, Percent_Identity=27.3170731707317, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=29.8449612403101, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI142976729, Length=202, Percent_Identity=26.2376237623762, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=180, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI83715985, Length=264, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=28.1767955801105, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI40807363, Length=200, Percent_Identity=28, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=37.007874015748, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=34.2412451361868, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=31.9066147859922, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=37.0517928286853, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=33.59375, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=31.2, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=31.8367346938775, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=32.1285140562249, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=30.2788844621514, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=33.59375, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=26.2745098039216, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=29.9610894941634, Blast_Score=80, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=31.3492063492063, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=30.7392996108949, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI25147288, Length=257, Percent_Identity=31.5175097276265, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=29.8449612403101, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=29.277566539924, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17555706, Length=263, Percent_Identity=31.5589353612167, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=29.7794117647059, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=29.7794117647059, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.0751879699248, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=30, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=29.1044776119403, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=30.6513409961686, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=29.7794117647059, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=29.2134831460674, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=27.9850746268657, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=30.0751879699248, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=29.6153846153846, Blast_Score=91, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=28.0442804428044, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=27.906976744186, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=28.3018867924528, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71982365, Length=194, Percent_Identity=31.4432989690722, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.125, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17564282, Length=197, Percent_Identity=28.9340101522843, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=28.6458333333333, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538486, Length=268, Percent_Identity=28.3582089552239, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=29.1497975708502, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=33.984375, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=27.9850746268657, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=29.0196078431373, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=28.957528957529, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=26.0204081632653, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17558628, Length=191, Percent_Identity=31.9371727748691, Blast_Score=67, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=25.4826254826255, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=27.1276595744681, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=37.1541501976285, Blast_Score=138, Evalue=4e-33, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=35.0194552529183, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=33.0739299610895, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=33.7349397590361, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=37.6984126984127, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=31.2741312741313, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24643142, Length=259, Percent_Identity=31.6602316602317, Blast_Score=102, Evalue=4e-22, Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=32.7272727272727, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24644337, Length=266, Percent_Identity=31.9548872180451, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI18859837, Length=258, Percent_Identity=30.6201550387597, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24649181, Length=196, Percent_Identity=31.1224489795918, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=27.8048780487805, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=27.8048780487805, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=27.4336283185841, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24665247, Length=206, Percent_Identity=27.6699029126214, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221331216, Length=206, Percent_Identity=27.6699029126214, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26154; Mature: 26154
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAGAAGREGVAPKLAGRRALITGAGSGIGRATALRLAADGAGIAAVDVDLDAAAKVADE CCCCCCCCCCCCHHHCCCEEEEEECCCCCCHHEEEEEEECCCCEEEEEECCHHHHHHHHH ATALGVGALALSADVGDEAAVRDAVSAAVGHLGGLDTVVAAAGITRAGRTDETTLDAWNL HHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEEE IIRINLTGVFLTLKHALPHLCAADGGAIVTIGSVASLVAAGRSSSYDASKGGVLQLTRAV EEEEEEEEEEEEHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH AVEYADRGVRANCVCPGVVATNLAANSQTIAGPLDAARGDNPQLRVSVPMARHADPAEIA HHHHHCCCCEECEECCCHHHHHCCCCCCCCCCCCHHCCCCCCEEEEECCHHHCCCHHHHH GAVAFLCSDDASFITGAAIAADGGFTAV HHEEEEECCCCCHHCCEEEEECCCCCCC >Mature Secondary Structure MVAGAAGREGVAPKLAGRRALITGAGSGIGRATALRLAADGAGIAAVDVDLDAAAKVADE CCCCCCCCCCCCHHHCCCEEEEEECCCCCCHHEEEEEEECCCCEEEEEECCHHHHHHHHH ATALGVGALALSADVGDEAAVRDAVSAAVGHLGGLDTVVAAAGITRAGRTDETTLDAWNL HHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEEE IIRINLTGVFLTLKHALPHLCAADGGAIVTIGSVASLVAAGRSSSYDASKGGVLQLTRAV EEEEEEEEEEEEHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH AVEYADRGVRANCVCPGVVATNLAANSQTIAGPLDAARGDNPQLRVSVPMARHADPAEIA HHHHHCCCCEECEECCCHHHHHCCCCCCCCCCCCHHCCCCCCEEEEECCHHHCCCHHHHH GAVAFLCSDDASFITGAAIAADGGFTAV HHEEEEECCCCCHHCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]